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Concatenate the sequences of a multi-FASTA file and make a new FASTA file with the new sequence
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| #!/bin/bash | |
| # Concatenate the sequences of a multi-FASTA file and make a new FASTA file with the new sequence | |
| INPUT_FILE=$1 | |
| OUTPUT_FILE=$2 | |
| (echo ">concantenated"; grep -i '^[ACGTURYKMSWBDHVNX\-]*$' $INPUT_FILE | tr -d '\n' | fold -w 60; echo) > $OUTPUT_FILE |
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Nice!