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(partial) EasyBuild log for failed build of /tmp/vsc44588/eb-_3u7a952/files_pr17261/r/RDKit/RDKit-2022.09.4-foss-2022a.eb (PR(s) #17261)
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RDKit-2022.09.4-foss-2022a_partial.log
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build
[ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
cd /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/SubstructLibrary && /apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include/python3.10 -I/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/include -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/Code -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External/boost-numeric-bindings -isystem /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/include -isystem /apps/gent/RHEL8/haswell-ib/software/Eigen/3.4.0-GCCcore-11.3.0/include -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O3 -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -MF CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o.d -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
make[2]: Entering directory '/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj'
[ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o
cd /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/SubstructLibrary && /apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External/catch/catch/single_include/catch2 -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include/python3.10 -I/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/include -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/Code -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External/boost-numeric-bindings -isystem /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/include -isystem /apps/gent/RHEL8/haswell-ib/software/Eigen/3.4.0-GCCcore-11.3.0/include -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O3 -DNDEBUG -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -c /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/Code/GraphMol/SubstructLibrary/catch_tests.cpp
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj'
cd /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj && /kyukon/home/apps/RHEL8/haswell-ib/software/CMake/3.24.3-GCCcore-11.3.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4 /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/Code/GraphMol/SubstructLibrary/Wrap /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/SubstructLibrary/Wrap /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj'
[ 99%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o
cd /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/SubstructLibrary/Wrap && /apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSubstructLibrary_EXPORTS -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include/python3.10 -I/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/include -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/Code -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External/boost-numeric-bindings -isystem /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/include -isystem /apps/gent/RHEL8/haswell-ib/software/Eigen/3.4.0-GCCcore-11.3.0/include -isystem /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Boost.Python/1.79.0-GCC-11.3.0/include -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O3 -DNDEBUG -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
[ 99%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o
cd /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/SubstructLibrary/Wrap && /apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/bin/g++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSubstructLibrary_EXPORTS -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/include/python3.10 -I/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/include -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/Code -I/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/External/boost-numeric-bindings -isystem /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/include -isystem /apps/gent/RHEL8/haswell-ib/software/Eigen/3.4.0-GCCcore-11.3.0/include -isystem /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Boost.Python/1.79.0-GCC-11.3.0/include -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O3 -DNDEBUG -fPIC -std=gnu++17 -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
[ 99%] Linking CXX executable testScaffoldNetwork
cd /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/ScaffoldNetwork && /kyukon/home/apps/RHEL8/haswell-ib/software/CMake/3.24.3-GCCcore-11.3.0/bin/cmake -E cmake_link_script CMakeFiles/testScaffoldNetwork.dir/link.txt --verbose=1
/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/bin/g++ -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O3 -DNDEBUG -L/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Boost.Python/1.79.0-GCC-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Boost.Python/1.79.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -o testScaffoldNetwork -Wl,-rpath,/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/lib ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitScaffoldNetwork.so.1.2022.09.4 ../../../lib/libRDKitMolStandardize.so.1.2022.09.4 ../../../lib/libRDKitChemReactions.so.1.2022.09.4 ../../../lib/libRDKitDescriptors.so.1.2022.09.4 ../../../lib/libRDKitPartialCharges.so.1.2022.09.4 ../../../lib/libRDKitFilterCatalog.so.1.2022.09.4 ../../../lib/libRDKitCatalogs.so.1.2022.09.4 ../../../lib/libRDKitFingerprints.so.1.2022.09.4 ../../../lib/libRDKitSubgraphs.so.1.2022.09.4 ../../../lib/libRDKitFileParsers.so.1.2022.09.4 ../../../lib/libRDKitDepictor.so.1.2022.09.4 ../../../lib/libRDKitMolAlign.so.1.2022.09.4 ../../../lib/libRDKitMolTransforms.so.1.2022.09.4 ../../../lib/libRDKitEigenSolvers.so.1.2022.09.4 ../../../lib/libRDKitAlignment.so.1.2022.09.4 ../../../lib/libRDKitcoordgen.so.1.2022.09.4 ../../../lib/libRDKitmaeparser.so.1.2022.09.4 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_system-mt-x64.so.1.79.0 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_iostreams-mt-x64.so.1.79.0 /apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib/libz.so ../../../lib/libRDKitChemTransforms.so.1.2022.09.4 ../../../lib/libRDKitSmilesParse.so.1.2022.09.4 ../../../lib/libRDKitSubstructMatch.so.1.2022.09.4 ../../../lib/libRDKitGenericGroups.so.1.2022.09.4 ../../../lib/libRDKitGraphMol.so.1.2022.09.4 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_serialization-mt-x64.so.1.79.0 ../../../lib/libRDKitRDGeometryLib.so.1.2022.09.4 ../../../lib/libRDKitDataStructs.so.1.2022.09.4 ../../../lib/libRDKitRingDecomposerLib.so.1.2022.09.4 ../../../lib/libRDKitRDGeneral.so.1.2022.09.4 -lpthread -ldl
make[2]: Leaving directory '/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj'
[ 99%] Built target testScaffoldNetwork
[ 99%] Linking CXX shared module ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so
cd /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/ScaffoldNetwork/Wrap && /kyukon/home/apps/RHEL8/haswell-ib/software/CMake/3.24.3-GCCcore-11.3.0/bin/cmake -E cmake_link_script CMakeFiles/rdScaffoldNetwork.dir/link.txt --verbose=1
/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/bin/g++ -fPIC -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O3 -DNDEBUG -shared -L/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib64 -L/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib -L/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/Rust/1.60.0-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Rust/1.60.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib64 -L/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib -L/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/libreadline/8.1.2-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/bzip2/1.0.8-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/binutils/2.38-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/Rust/1.60.0-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Rust/1.60.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Boost.Python/1.79.0-GCC-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Boost.Python/1.79.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib -shared -o ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -Wl,-rpath,/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/lib: ../../../../lib/libRDKitScaffoldNetwork.so.1.2022.09.4 ../../../../lib/libRDKitRDBoost.so.1.2022.09.4 ../../../../lib/libRDKitMolStandardize.so.1.2022.09.4 ../../../../lib/libRDKitChemReactions.so.1.2022.09.4 ../../../../lib/libRDKitDescriptors.so.1.2022.09.4 ../../../../lib/libRDKitPartialCharges.so.1.2022.09.4 ../../../../lib/libRDKitFilterCatalog.so.1.2022.09.4 ../../../../lib/libRDKitCatalogs.so.1.2022.09.4 ../../../../lib/libRDKitFingerprints.so.1.2022.09.4 ../../../../lib/libRDKitSubgraphs.so.1.2022.09.4 ../../../../lib/libRDKitFileParsers.so.1.2022.09.4 ../../../../lib/libRDKitDepictor.so.1.2022.09.4 ../../../../lib/libRDKitMolAlign.so.1.2022.09.4 ../../../../lib/libRDKitMolTransforms.so.1.2022.09.4 ../../../../lib/libRDKitEigenSolvers.so.1.2022.09.4 ../../../../lib/libRDKitAlignment.so.1.2022.09.4 ../../../../lib/libRDKitcoordgen.so.1.2022.09.4 ../../../../lib/libRDKitmaeparser.so.1.2022.09.4 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_system-mt-x64.so.1.79.0 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_iostreams-mt-x64.so.1.79.0 /apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2022.09.4 ../../../../lib/libRDKitSmilesParse.so.1.2022.09.4 ../../../../lib/libRDKitSubstructMatch.so.1.2022.09.4 ../../../../lib/libRDKitGenericGroups.so.1.2022.09.4 ../../../../lib/libRDKitGraphMol.so.1.2022.09.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2022.09.4 ../../../../lib/libRDKitDataStructs.so.1.2022.09.4 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_serialization-mt-x64.so.1.79.0 ../../../../lib/libRDKitRingDecomposerLib.so.1.2022.09.4 /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/libpython3.10.so 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make[2]: Leaving directory '/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj'
[ 99%] Built target rdScaffoldNetwork
[ 99%] Linking CXX executable substructLibraryCatchTest
cd /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/SubstructLibrary && /kyukon/home/apps/RHEL8/haswell-ib/software/CMake/3.24.3-GCCcore-11.3.0/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryCatchTest.dir/link.txt --verbose=1
/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/bin/g++ -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O3 -DNDEBUG -L/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Boost.Python/1.79.0-GCC-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Boost.Python/1.79.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -o substructLibraryCatchTest -Wl,-rpath,/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/lib ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitSubstructLibrary.so.1.2022.09.4 ../../../lib/libRDKitTautomerQuery.so.1.2022.09.4 ../../../lib/libRDKitMolStandardize.so.1.2022.09.4 ../../../lib/libRDKitChemReactions.so.1.2022.09.4 ../../../lib/libRDKitFilterCatalog.so.1.2022.09.4 ../../../lib/libRDKitDescriptors.so.1.2022.09.4 ../../../lib/libRDKitFileParsers.so.1.2022.09.4 ../../../lib/libRDKitDepictor.so.1.2022.09.4 ../../../lib/libRDKitMolAlign.so.1.2022.09.4 ../../../lib/libRDKitAlignment.so.1.2022.09.4 ../../../lib/libRDKitcoordgen.so.1.2022.09.4 ../../../lib/libRDKitChemTransforms.so.1.2022.09.4 ../../../lib/libRDKitmaeparser.so.1.2022.09.4 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_system-mt-x64.so.1.79.0 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_iostreams-mt-x64.so.1.79.0 /apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib/libz.so ../../../lib/libRDKitMolTransforms.so.1.2022.09.4 ../../../lib/libRDKitPartialCharges.so.1.2022.09.4 ../../../lib/libRDKitEigenSolvers.so.1.2022.09.4 ../../../lib/libRDKitFingerprints.so.1.2022.09.4 ../../../lib/libRDKitSubgraphs.so.1.2022.09.4 ../../../lib/libRDKitSubstructMatch.so.1.2022.09.4 ../../../lib/libRDKitGenericGroups.so.1.2022.09.4 ../../../lib/libRDKitSmilesParse.so.1.2022.09.4 ../../../lib/libRDKitGraphMol.so.1.2022.09.4 ../../../lib/libRDKitRDGeometryLib.so.1.2022.09.4 ../../../lib/libRDKitRingDecomposerLib.so.1.2022.09.4 ../../../lib/libRDKitCatalogs.so.1.2022.09.4 ../../../lib/libRDKitDataStructs.so.1.2022.09.4 ../../../lib/libRDKitRDGeneral.so.1.2022.09.4 -lpthread -ldl /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_serialization-mt-x64.so.1.79.0
make[2]: Leaving directory '/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj'
[ 99%] Built target substructLibraryCatchTest
[100%] Linking CXX executable substructLibraryTest
cd /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/SubstructLibrary && /kyukon/home/apps/RHEL8/haswell-ib/software/CMake/3.24.3-GCCcore-11.3.0/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1
/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/bin/g++ -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O3 -DNDEBUG -L/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/cairo/1.17.4-GCCcore-11.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Boost.Python/1.79.0-GCC-11.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Boost.Python/1.79.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Pillow/9.1.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/matplotlib/3.5.2-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SciPy-bundle/2022.05-foss-2022a/lib -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/pkgconf/1.8.0-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FFTW/3.3.10-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/apps/gent/RHEL8/haswell-ib/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/lib CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest -Wl,-rpath,/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/lib ../../../lib/libRDKitSubstructLibrary.so.1.2022.09.4 ../../../lib/libRDKitTautomerQuery.so.1.2022.09.4 ../../../lib/libRDKitMolStandardize.so.1.2022.09.4 ../../../lib/libRDKitChemReactions.so.1.2022.09.4 ../../../lib/libRDKitFilterCatalog.so.1.2022.09.4 ../../../lib/libRDKitDescriptors.so.1.2022.09.4 ../../../lib/libRDKitFileParsers.so.1.2022.09.4 ../../../lib/libRDKitChemTransforms.so.1.2022.09.4 ../../../lib/libRDKitDepictor.so.1.2022.09.4 ../../../lib/libRDKitMolAlign.so.1.2022.09.4 ../../../lib/libRDKitAlignment.so.1.2022.09.4 ../../../lib/libRDKitcoordgen.so.1.2022.09.4 ../../../lib/libRDKitmaeparser.so.1.2022.09.4 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_system-mt-x64.so.1.79.0 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_iostreams-mt-x64.so.1.79.0 /apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib/libz.so ../../../lib/libRDKitPartialCharges.so.1.2022.09.4 ../../../lib/libRDKitMolTransforms.so.1.2022.09.4 ../../../lib/libRDKitEigenSolvers.so.1.2022.09.4 ../../../lib/libRDKitFingerprints.so.1.2022.09.4 ../../../lib/libRDKitSmilesParse.so.1.2022.09.4 ../../../lib/libRDKitSubstructMatch.so.1.2022.09.4 ../../../lib/libRDKitGenericGroups.so.1.2022.09.4 ../../../lib/libRDKitSubgraphs.so.1.2022.09.4 ../../../lib/libRDKitGraphMol.so.1.2022.09.4 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_serialization-mt-x64.so.1.79.0 ../../../lib/libRDKitRDGeometryLib.so.1.2022.09.4 ../../../lib/libRDKitRingDecomposerLib.so.1.2022.09.4 ../../../lib/libRDKitCatalogs.so.1.2022.09.4 ../../../lib/libRDKitDataStructs.so.1.2022.09.4 ../../../lib/libRDKitRDGeneral.so.1.2022.09.4 -lpthread -ldl
make[2]: Leaving directory '/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj'
[100%] Built target substructLibraryTest
[100%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so
cd /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/MolStandardize/Wrap && /kyukon/home/apps/RHEL8/haswell-ib/software/CMake/3.24.3-GCCcore-11.3.0/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1
/apps/gent/RHEL8/haswell-ib/software/GCCcore/11.3.0/bin/g++ -fPIC -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O3 -DNDEBUG -shared -L/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib64 -L/apps/gent/RHEL8/haswell-ib/software/OpenSSL/1.1/lib -L/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/libffi/3.4.2-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/GMP/6.2.1-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/XZ/5.2.5-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib64 -L/apps/gent/RHEL8/haswell-ib/software/SQLite/3.38.3-GCCcore-11.3.0/lib -L/apps/gent/RHEL8/haswell-ib/software/ncurses/6.3-GCCcore-11.3.0/lib64 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make[2]: Leaving directory '/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj'
[100%] Built target rdMolStandardize
[100%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so
cd /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/Code/GraphMol/SubstructLibrary/Wrap && /kyukon/home/apps/RHEL8/haswell-ib/software/CMake/3.24.3-GCCcore-11.3.0/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1
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CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/lib: ../../../../lib/libRDKitSubstructLibrary.so.1.2022.09.4 ../../../../lib/libRDKitRDBoost.so.1.2022.09.4 ../../../../lib/libRDKitTautomerQuery.so.1.2022.09.4 ../../../../lib/libRDKitMolStandardize.so.1.2022.09.4 ../../../../lib/libRDKitChemReactions.so.1.2022.09.4 ../../../../lib/libRDKitFilterCatalog.so.1.2022.09.4 ../../../../lib/libRDKitDescriptors.so.1.2022.09.4 ../../../../lib/libRDKitFileParsers.so.1.2022.09.4 ../../../../lib/libRDKitChemTransforms.so.1.2022.09.4 ../../../../lib/libRDKitDepictor.so.1.2022.09.4 ../../../../lib/libRDKitMolAlign.so.1.2022.09.4 ../../../../lib/libRDKitAlignment.so.1.2022.09.4 ../../../../lib/libRDKitcoordgen.so.1.2022.09.4 ../../../../lib/libRDKitmaeparser.so.1.2022.09.4 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_system-mt-x64.so.1.79.0 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_iostreams-mt-x64.so.1.79.0 /apps/gent/RHEL8/haswell-ib/software/zlib/1.2.12-GCCcore-11.3.0/lib/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2022.09.4 ../../../../lib/libRDKitMolTransforms.so.1.2022.09.4 ../../../../lib/libRDKitEigenSolvers.so.1.2022.09.4 ../../../../lib/libRDKitFingerprints.so.1.2022.09.4 ../../../../lib/libRDKitSubgraphs.so.1.2022.09.4 ../../../../lib/libRDKitSubstructMatch.so.1.2022.09.4 ../../../../lib/libRDKitGenericGroups.so.1.2022.09.4 ../../../../lib/libRDKitSmilesParse.so.1.2022.09.4 ../../../../lib/libRDKitGraphMol.so.1.2022.09.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2022.09.4 ../../../../lib/libRDKitRingDecomposerLib.so.1.2022.09.4 ../../../../lib/libRDKitCatalogs.so.1.2022.09.4 ../../../../lib/libRDKitDataStructs.so.1.2022.09.4 /apps/gent/RHEL8/haswell-ib/software/Boost/1.79.0-GCC-11.3.0/lib/libboost_serialization-mt-x64.so.1.79.0 /apps/gent/RHEL8/haswell-ib/software/Python/3.10.4-GCCcore-11.3.0/lib/libpython3.10.so /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/haswell-ib/software/Boost.Python/1.79.0-GCC-11.3.0/lib/libboost_python310-mt-x64.so.1.79.0 ../../../../lib/libRDKitRDGeneral.so.1.2022.09.4 -lpthread -ldl
make[2]: Leaving directory '/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj'
[100%] Built target rdSubstructLibrary
make[1]: Leaving directory '/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj'
/kyukon/home/apps/RHEL8/haswell-ib/software/CMake/3.24.3-GCCcore-11.3.0/bin/cmake -E cmake_progress_start /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/CMakeFiles 0
Test project /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj
Start 1: testInchi
1/210 Test #1: testInchi .............................. Passed 9.73 sec
Start 2: testCoordGen
2/210 Test #2: testCoordGen ........................... Passed 0.26 sec
Start 3: pyCoordGen
3/210 Test #3: pyCoordGen ............................. Passed 4.27 sec
Start 4: testDict
4/210 Test #4: testDict ............................... Passed 1.05 sec
Start 5: testRDValue
5/210 Test #5: testRDValue ............................ Passed 0.01 sec
Start 6: testConcurrentQueue
6/210 Test #6: testConcurrentQueue .................... Passed 16.44 sec
Start 7: dictTestsCatch
7/210 Test #7: dictTestsCatch ......................... Passed 0.03 sec
Start 8: logTestsCatch
8/210 Test #8: logTestsCatch .......................... Passed 0.02 sec
Start 9: testDataStructs
9/210 Test #9: testDataStructs ........................ Passed 0.04 sec
Start 10: testFPB
10/210 Test #10: testFPB ................................ Passed 0.03 sec
Start 11: testMultiFPB
11/210 Test #11: testMultiFPB ........................... Passed 0.03 sec
Start 12: pyBV
12/210 Test #12: pyBV ................................... Passed 3.15 sec
Start 13: pyDiscreteValueVect
13/210 Test #13: pyDiscreteValueVect .................... Passed 0.45 sec
Start 14: pySparseIntVect
14/210 Test #14: pySparseIntVect ........................ Passed 0.48 sec
Start 15: pyFPB
15/210 Test #15: pyFPB .................................. Passed 0.43 sec
Start 16: testTransforms
16/210 Test #16: testTransforms ......................... Passed 0.03 sec
Start 17: testGrid
17/210 Test #17: testGrid ............................... Passed 0.06 sec
Start 18: geometryTestsCatch
18/210 Test #18: geometryTestsCatch ..................... Passed 0.03 sec
Start 19: testPyGeometry
19/210 Test #19: testPyGeometry ......................... Passed 0.47 sec
Start 20: testMatrices
20/210 Test #20: testMatrices ........................... Passed 0.02 sec
Start 21: testConrec
21/210 Test #21: testConrec ............................. Passed 0.06 sec
Start 22: testAlignment
22/210 Test #22: testAlignment .......................... Passed 0.03 sec
Start 23: pyAlignment
23/210 Test #23: pyAlignment ............................ Passed 0.40 sec
Start 24: testOptimizer
24/210 Test #24: testOptimizer .......................... Passed 0.04 sec
Start 25: testUFFForceField
25/210 Test #25: testUFFForceField ...................... Passed 0.30 sec
Start 26: testMMFFForceField
26/210 Test #26: testMMFFForceField ..................... Passed 9.32 sec
Start 27: pyForceFieldConstraints
27/210 Test #27: pyForceFieldConstraints ................ Passed 1.20 sec
Start 28: testDistGeom
28/210 Test #28: testDistGeom ........................... Passed 0.04 sec
Start 29: pyDistGeom
29/210 Test #29: pyDistGeom ............................. Passed 0.45 sec
Start 30: graphmolTest1
30/210 Test #30: graphmolTest1 .......................... Passed 12.19 sec
Start 31: graphmolcpTest
31/210 Test #31: graphmolcpTest ......................... Passed 0.05 sec
Start 32: graphmolqueryTest
32/210 Test #32: graphmolqueryTest ...................... Passed 0.05 sec
Start 33: graphmolMolOpsTest
33/210 Test #33: graphmolMolOpsTest ..................... Passed 0.68 sec
Start 34: graphmoltestChirality
34/210 Test #34: graphmoltestChirality .................. Passed 0.06 sec
Start 35: graphmoltestPickler
35/210 Test #35: graphmoltestPickler .................... Passed 0.20 sec
Start 36: graphmoltestPicklerGlobalSetting
36/210 Test #36: graphmoltestPicklerGlobalSetting ....... Passed 0.03 sec
Start 37: graphmolIterTest
37/210 Test #37: graphmolIterTest ....................... Passed 0.02 sec
Start 38: hanoiTest
38/210 Test #38: hanoiTest .............................. Passed 1.87 sec
Start 39: graphmolMemTest1
39/210 Test #39: graphmolMemTest1 ....................... Passed 0.02 sec
Start 40: resMolSupplierTest
40/210 Test #40: resMolSupplierTest ..................... Passed 2.30 sec
Start 41: molBundleTest
41/210 Test #41: molBundleTest .......................... Passed 0.03 sec
Start 42: testSGroup
42/210 Test #42: testSGroup ............................. Passed 0.03 sec
Start 43: test-valgrind
43/210 Test #43: test-valgrind .......................... Passed 0.02 sec
Start 44: graphmolTestsCatch
44/210 Test #44: graphmolTestsCatch ..................... Passed 0.04 sec
Start 45: graphmolSGroupCatch
45/210 Test #45: graphmolSGroupCatch .................... Passed 0.03 sec
Start 46: graphmolAdjustQueryCatch
46/210 Test #46: graphmolAdjustQueryCatch ............... Passed 0.04 sec
Start 47: chiralityTestsCatch
47/210 Test #47: chiralityTestsCatch .................... Passed 0.05 sec
Start 48: canonTestsCatch
48/210 Test #48: canonTestsCatch ........................ Passed 0.03 sec
Start 49: moliteratorTestsCatch
49/210 Test #49: moliteratorTestsCatch .................. Passed 0.02 sec
Start 50: testDepictor
50/210 Test #50: testDepictor ........................... Passed 0.21 sec
Start 51: depictorCatch
51/210 Test #51: depictorCatch .......................... Passed 0.03 sec
Start 52: pyDepictor
52/210 Test #52: pyDepictor ............................. Passed 0.53 sec
Start 53: smiTest1
53/210 Test #53: smiTest1 ............................... Passed 0.25 sec
Start 54: smiTest2
54/210 Test #54: smiTest2 ............................... Passed 0.02 sec
Start 55: cxsmilesTest
55/210 Test #55: cxsmilesTest ........................... Passed 0.03 sec
Start 56: smaTest1
56/210 Test #56: smaTest1 ............................... Passed 0.12 sec
Start 57: smiTestCatch
57/210 Test #57: smiTestCatch ........................... Passed 0.10 sec
Start 58: nontetrahedralCatch
58/210 Test #58: nontetrahedralCatch .................... Passed 0.05 sec
Start 59: fileParsersTest1
59/210 Test #59: fileParsersTest1 ....................... Passed 3.50 sec
Start 60: testMolSupplier
60/210 Test #60: testMolSupplier ........................ Passed 0.16 sec
Start 61: testGeneralFileReader
61/210 Test #61: testGeneralFileReader .................. Passed 0.08 sec
Start 62: testMultithreadedMolSupplier
62/210 Test #62: testMultithreadedMolSupplier ........... Passed 7.58 sec
Start 63: testMolWriter
63/210 Test #63: testMolWriter .......................... Passed 0.28 sec
Start 64: testTplParser
64/210 Test #64: testTplParser .......................... Passed 0.03 sec
Start 65: testMol2ToMol
65/210 Test #65: testMol2ToMol .......................... Passed 0.04 sec
Start 66: testSequence
66/210 Test #66: testSequence ........................... Passed 0.04 sec
Start 67: testExtendedStereoParsing
67/210 Test #67: testExtendedStereoParsing .............. Passed 0.03 sec
Start 68: fileParsersCatchTest
68/210 Test #68: fileParsersCatchTest ................... Passed 0.14 sec
Start 69: testPropertyLists
69/210 Test #69: testPropertyLists ...................... Passed 0.06 sec
Start 70: XYZFileParserCatchTest
70/210 Test #70: XYZFileParserCatchTest ................. Passed 0.06 sec
Start 71: cdxmlParserCatchTest
71/210 Test #71: cdxmlParserCatchTest ................... Passed 0.14 sec
Start 72: molfileStereoCatchTest
72/210 Test #72: molfileStereoCatchTest ................. Passed 0.03 sec
Start 73: testSubstructMatch
73/210 Test #73: testSubstructMatch ..................... Passed 0.37 sec
Start 74: substructTestCatch
74/210 Test #74: substructTestCatch ..................... Passed 0.28 sec
Start 75: testGenericGroups
75/210 Test #75: testGenericGroups ...................... Passed 0.05 sec
Start 76: testReaction
76/210 Test #76: testReaction ........................... Passed 0.29 sec
Start 77: testReactionFingerprints
77/210 Test #77: testReactionFingerprints ............... Passed 0.04 sec
Start 78: testEnumeration
78/210 Test #78: testEnumeration ........................ Passed 6.56 sec
Start 79: rxnTestCatch
79/210 Test #79: rxnTestCatch ........................... Passed 0.13 sec
Start 80: pyChemReactions
80/210 Test #80: pyChemReactions ........................ Passed 0.72 sec
Start 81: pyChemReactionEnumerations
81/210 Test #81: pyChemReactionEnumerations ............. Passed 1.62 sec
Start 82: pyChemReactionSanitize
82/210 Test #82: pyChemReactionSanitize ................. Passed 0.55 sec
Start 83: testChemTransforms
83/210 Test #83: testChemTransforms ..................... Passed 0.15 sec
Start 84: chemTransformsTestCatch
84/210 Test #84: chemTransformsTestCatch ................ Passed 0.10 sec
Start 85: tautomerQueryTestCatch
85/210 Test #85: tautomerQueryTestCatch ................. Passed 0.14 sec
Start 86: pyTautomerQuery
86/210 Test #86: pyTautomerQuery ........................ Passed 0.40 sec
Start 87: testSubgraphs1
87/210 Test #87: testSubgraphs1 ......................... Passed 0.26 sec
Start 88: testSubgraphs2
88/210 Test #88: testSubgraphs2 ......................... Passed 0.03 sec
Start 89: filterCatalogTest
89/210 Test #89: filterCatalogTest ...................... Passed 0.12 sec
Start 90: pyFilterCatalog
90/210 Test #90: pyFilterCatalog ........................ Passed 0.89 sec
Start 91: testFragCatalog
91/210 Test #91: testFragCatalog ........................ Passed 0.66 sec
Start 92: pyFragCatalog
92/210 Test #92: pyFragCatalog .......................... Passed 0.41 sec
Start 93: testDescriptors
93/210 Test #93: testDescriptors ........................ Passed 1.78 sec
Start 94: testAUTOCORR2D
94/210 Test #94: testAUTOCORR2D ......................... Passed 0.29 sec
Start 95: testATF
95/210 Test #95: testATF ................................ Passed 0.03 sec
Start 96: testBCUT
96/210 Test #96: testBCUT ............................... Passed 0.32 sec
Start 97: testEEM
97/210 Test #97: testEEM ................................ Passed 0.38 sec
Start 98: testPBF
98/210 Test #98: testPBF ................................ Passed 0.14 sec
Start 99: testRDFcustom
99/210 Test #99: testRDFcustom .......................... Passed 2.09 sec
Start 100: testRDF
100/210 Test #100: testRDF ................................ Passed 0.39 sec
Start 101: testMORSE
101/210 Test #101: testMORSE .............................. Passed 0.53 sec
Start 102: test3D
102/210 Test #102: test3D ................................. Passed 0.30 sec
Start 103: testWHIM
103/210 Test #103: testWHIM ............................... Passed 0.24 sec
Start 104: testGETAWAY
104/210 Test #104: testGETAWAY ............................ Passed 0.86 sec
Start 105: testAUTOCORR3D
105/210 Test #105: testAUTOCORR3D ......................... Passed 0.21 sec
Start 106: testCoulombMat
106/210 Test #106: testCoulombMat ......................... Passed 0.03 sec
Start 107: descriptorsTestCatch
107/210 Test #107: descriptorsTestCatch ................... Passed 0.03 sec
Start 108: pyMolDescriptors
108/210 Test #108: pyMolDescriptors ....................... Passed 0.46 sec
Start 109: pyMolDescriptors3D
109/210 Test #109: pyMolDescriptors3D ..................... Passed 0.64 sec
Start 110: testFingerprints
110/210 Test #110: testFingerprints ....................... Passed 2.50 sec
Start 111: testMHFPFingerprint
111/210 Test #111: testMHFPFingerprint .................... Passed 0.12 sec
Start 112: testFingerprintGenerators
112/210 Test #112: testFingerprintGenerators .............. Passed 0.53 sec
Start 113: fpTestCatch
113/210 Test #113: fpTestCatch ............................ Passed 0.04 sec
Start 114: pyTestGenerator
114/210 Test #114: pyTestGenerator ........................ Passed 0.47 sec
Start 115: pyTestMHFP
115/210 Test #115: pyTestMHFP ............................. Passed 0.48 sec
Start 116: testPartialCharges
116/210 Test #116: testPartialCharges ..................... Passed 0.05 sec
Start 117: pyPartialCharges
117/210 Test #117: pyPartialCharges ....................... Passed 0.50 sec
Start 118: testMolTransforms
118/210 Test #118: testMolTransforms ...................... Passed 0.08 sec
Start 119: pyMolTransforms
119/210 Test #119: pyMolTransforms ........................ Passed 0.52 sec
Start 120: testMMFFForceFieldHelpers
120/210 Test #120: testMMFFForceFieldHelpers .............. Passed 2.45 sec
Start 121: testMMFFForceFieldHelpersMultiThread
121/210 Test #121: testMMFFForceFieldHelpersMultiThread ... Passed 0.28 sec
Start 122: testUFFForceFieldHelpers
122/210 Test #122: testUFFForceFieldHelpers ............... Passed 2.50 sec
Start 123: testCrystalForceField
123/210 Test #123: testCrystalForceField .................. Passed 0.15 sec
Start 124: pyForceFieldHelpers
124/210 Test #124: pyForceFieldHelpers .................... Passed 0.48 sec
Start 125: testDistGeomHelpers
125/210 Test #125: testDistGeomHelpers .................... Passed 62.15 sec
Start 126: distGeomHelpersCatch
126/210 Test #126: distGeomHelpersCatch ................... Passed 1.04 sec
Start 127: pyDistGeomHelpers
127/210 Test #127: pyDistGeomHelpers ...................... Passed 14.56 sec
Start 128: testMolAlign
128/210 Test #128: testMolAlign ........................... Passed 0.21 sec
Start 129: testO3AAlign
129/210 Test #129: testO3AAlign ........................... Passed 18.05 sec
Start 130: molAlignCatchTest
130/210 Test #130: molAlignCatchTest ...................... Passed 0.06 sec
Start 131: pyMolAlign
131/210 Test #131: pyMolAlign ............................. Passed 8.02 sec
Start 132: testFeatures
132/210 Test #132: testFeatures ........................... Passed 0.07 sec
Start 133: pyChemicalFeatures
133/210 Test #133: pyChemicalFeatures ..................... Passed 0.51 sec
Start 134: testShapeHelpers
134/210 Test #134: testShapeHelpers ....................... Passed 0.08 sec
Start 135: pyShapeHelpers
135/210 Test #135: pyShapeHelpers ......................... Passed 0.49 sec
Start 136: testMolCatalog
136/210 Test #136: testMolCatalog ......................... Passed 0.06 sec
Start 137: pyMolCatalog
137/210 Test #137: pyMolCatalog ........................... Passed 0.41 sec
Start 138: moldraw2DTest1
138/210 Test #138: moldraw2DTest1 ......................... Passed 4.48 sec
Start 139: moldraw2DTestCatch
139/210 Test #139: moldraw2DTestCatch ..................... Passed 1.17 sec
Start 140: moldraw2DRxnTest1
140/210 Test #140: moldraw2DRxnTest1 ...................... Passed 0.11 sec
Start 141: pyMolDraw2D
141/210 Test #141: pyMolDraw2D ............................ Passed 0.57 sec
Start 142: testFMCS
142/210 Test #142: testFMCS ............................... Passed 2.02 sec
Start 143: pyFMCS
143/210 Test #143: pyFMCS ................................. Passed 2.62 sec
Start 144: FMCStest
144/210 Test #144: FMCStest ............................... Passed 0.05 sec
Start 145: molHashCatchTest
145/210 Test #145: molHashCatchTest ....................... Passed 0.08 sec
Start 146: pyMolHash
146/210 Test #146: pyMolHash .............................. Passed 0.37 sec
Start 147: testMMPA
147/210 Test #147: testMMPA ............................... Passed 0.19 sec
Start 148: pyMMPA
148/210 Test #148: pyMMPA ................................. Passed 1.24 sec
Start 149: testCIPLabeler
149/210 Test #149: testCIPLabeler ......................... Passed 0.07 sec
Start 150: pyCIPLabelsWrapTest
150/210 Test #150: pyCIPLabelsWrapTest .................... Passed 0.49 sec
Start 151: pyCIPLabelsValidation
151/210 Test #151: pyCIPLabelsValidation .................. Passed 4.02 sec
Start 152: deprotectTest
152/210 Test #152: deprotectTest .......................... Passed 0.14 sec
Start 153: pyDeprotect
153/210 Test #153: pyDeprotect ............................ Passed 0.39 sec
Start 154: testReducedGraphs
154/210 Test #154: testReducedGraphs ...................... Passed 0.08 sec
Start 155: pyReducedGraphs
155/210 Test #155: pyReducedGraphs ........................ Passed 0.42 sec
Start 156: trajectoryTest
156/210 Test #156: trajectoryTest ......................... Passed 0.31 sec
Start 157: substructLibraryTest
157/210 Test #157: substructLibraryTest ................... Passed 5.20 sec
Start 158: substructLibraryCatchTest
158/210 Test #158: substructLibraryCatchTest .............. Passed 0.10 sec
Start 159: pySubstructLibrary
159/210 Test #159: pySubstructLibrary ..................... Passed 5.96 sec
Start 160: testRGroupDecomp
160/210 Test #160: testRGroupDecomp ....................... Passed 7.07 sec
Start 161: testRGroupDecompInternals
161/210 Test #161: testRGroupDecompInternals .............. Passed 0.03 sec
Start 162: rgroupCatchTests
162/210 Test #162: rgroupCatchTests ....................... Passed 0.10 sec
Start 163: pyRGroupDecomposition
163/210 Test #163: pyRGroupDecomposition .................. Passed 1.39 sec
Start 164: molInterchangeTest1
164/210 Test #164: molInterchangeTest1 .................... Passed 0.07 sec
Start 165: molInterchangeCatchTest
165/210 Test #165: molInterchangeCatchTest ................ Passed 0.06 sec
Start 166: pyMolInterchange
166/210 Test #166: pyMolInterchange ....................... Passed 0.43 sec
Start 167: testSLNParse
167/210 Test #167: testSLNParse ........................... Passed 0.07 sec
Start 168: pySLNParse
168/210 Test #168: pySLNParse ............................. Passed 0.44 sec
Start 169: pyGraphMolWrap
169/210 Test #169: pyGraphMolWrap ......................... Passed 7.06 sec
Start 170: pyTestConformerWrap
170/210 Test #170: pyTestConformerWrap .................... Passed 0.52 sec
Start 171: pyTestTrajectory
171/210 Test #171: pyTestTrajectory ....................... Passed 0.67 sec
Start 172: pyTestSGroups
172/210 Test #172: pyTestSGroups .......................... Passed 0.49 sec
Start 173: pyTestThreads
173/210 Test #173: pyTestThreads .......................... Passed 0.82 sec
Start 174: pyTestMultithreadedMolSupplier
174/210 Test #174: pyTestMultithreadedMolSupplier ......... Passed 0.57 sec
Start 175: pyTestPropertyLists
175/210 Test #175: pyTestPropertyLists .................... Passed 0.48 sec
Start 176: pyCDXMLTest
176/210 Test #176: pyCDXMLTest ............................ Passed 0.48 sec
Start 177: molStandardizeTest
177/210 Test #177: molStandardizeTest ..................... Passed 0.76 sec
Start 178: molNormalizeTest
178/210 Test #178: molNormalizeTest ....................... Passed 0.10 sec
Start 179: molValidateTest
179/210 Test #179: molValidateTest ........................ Passed 0.05 sec
Start 180: molChargeTest
180/210 Test #180: molChargeTest .......................... Passed 0.07 sec
Start 181: molTautomerTest
181/210 Test #181: molTautomerTest ........................ Passed 1.65 sec
Start 182: molStandardizeSmallTest
182/210 Test #182: molStandardizeSmallTest ................ Passed 0.04 sec
Start 183: molFragmentTest
183/210 Test #183: molFragmentTest ........................ Passed 0.05 sec
Start 184: molStandardizeCatchTest
184/210 Test #184: molStandardizeCatchTest ................ Passed 0.15 sec
Start 185: pyMolStandardize
185/210 Test #185: pyMolStandardize ....................... Passed 1.85 sec
Start 186: testScaffoldNetwork
186/210 Test #186: testScaffoldNetwork .................... Passed 0.86 sec
Start 187: pyScaffoldNetwork
187/210 Test #187: pyScaffoldNetwork ...................... Passed 0.42 sec
Start 188: pyScaffoldNetworkPickling
188/210 Test #188: pyScaffoldNetworkPickling .............. Passed 0.49 sec
Start 189: testMolEnumerator
189/210 Test #189: testMolEnumerator ...................... Passed 0.12 sec
Start 190: pyMolEnumerator
190/210 Test #190: pyMolEnumerator ........................ Passed 0.42 sec
Start 191: testAbbreviations
191/210 Test #191: testAbbreviations ...................... Passed 0.09 sec
Start 192: pyAbbreviations
192/210 Test #192: pyAbbreviations ........................ Passed 0.42 sec
Start 193: testQuery
193/210 Test #193: testQuery .............................. Passed 0.02 sec
Start 194: testMatCalc
194/210 Test #194: testMatCalc ............................ Passed 0.02 sec
Start 195: pyMatCalc
195/210 Test #195: pyMatCalc .............................. Passed 0.79 sec
Start 196: testSimDivPickers
196/210 Test #196: testSimDivPickers ...................... Passed 0.02 sec
Start 197: pickersTestsCatch
197/210 Test #197: pickersTestsCatch ...................... Passed 0.12 sec
Start 198: pySimDivPickers
198/210 Test #198: pySimDivPickers ........................***Failed 0.52 sec
[12:38:48] the useCache argument is deprecated and ignored
...[12:38:48] the useCache argument is deprecated and ignored
[12:38:48] the useCache argument is deprecated and ignored
.[12:38:48] the useCache argument is deprecated and ignored
......F
======================================================================
FAIL: testNonUniqueCrash (__main__.TestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-Release_2022_09_4/Code/SimDivPickers/Wrap/testPickers.py", line 139, in testNonUniqueCrash
self.assertTrue(tuple(mm2) != tuple(mm1)) or (tuple(mm3) != tuple(mm1))
AssertionError: False is not true
----------------------------------------------------------------------
Ran 11 tests in 0.185s
FAILED (failures=1)
Start 199: pyRanker
199/210 Test #199: pyRanker ............................... Passed 0.45 sec
Start 200: testChemicalFeatures
200/210 Test #200: testChemicalFeatures ................... Passed 0.03 sec
Start 201: pyFeatures
201/210 Test #201: pyFeatures ............................. Passed 0.46 sec
Start 202: pythonTestDbCLI
202/210 Test #202: pythonTestDbCLI ........................ Passed 17.44 sec
Start 203: pythonTestDirRoot
203/210 Test #203: pythonTestDirRoot ...................... Passed 0.63 sec
Start 204: pythonTestDirML
204/210 Test #204: pythonTestDirML ........................ Passed 18.67 sec
Start 205: pythonTestDirDataStructs
205/210 Test #205: pythonTestDirDataStructs ............... Passed 1.97 sec
Start 206: pythonTestDirDbase
206/210 Test #206: pythonTestDirDbase ..................... Passed 0.89 sec
Start 207: pythonTestDirSimDivFilters
207/210 Test #207: pythonTestDirSimDivFilters ............. Passed 0.62 sec
Start 208: pythonTestDirVLib
208/210 Test #208: pythonTestDirVLib ...................... Passed 0.98 sec
Start 209: pythonTestSping
209/210 Test #209: pythonTestSping ........................ Passed 0.88 sec
Start 210: pythonTestDirChem
210/210 Test #210: pythonTestDirChem ...................... Passed 86.76 sec
99% tests passed, 1 tests failed out of 210
Total Test time (real) = 409.32 sec
The following tests FAILED:
198 - pySimDivPickers (Failed)
Errors while running CTest
(at easybuild/easybuild-framework/easybuild/tools/run.py:643 in parse_cmd_output)
== 2023-02-07 12:40:58,962 build_log.py:267 INFO ... (took 18 mins 12 secs)
== 2023-02-07 12:40:58,970 easyblock.py:4208 WARNING build failed (first 300 chars): cmd " make -j 8 && cp -RT /tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/rdkit-*/ ./ && export RDBASE=$PWD && export PYTHONPATH=$PWD:$PYTHONPATH && export LD_LIBRARY_PATH=/tmp/vsc44588/easybuild/build/RDKit/2022.09.4/foss-2022a/easybuild_obj/lib:${LD_LIBRARY_PATH} && ctest --output-on-fai
== 2023-02-07 12:40:58,972 easyblock.py:328 INFO Closing log for application name RDKit version 2022.09.4
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