Created
January 10, 2022 13:39
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(partial) EasyBuild log for failed build of /tmp/vsc44588/eb-ewy1b63z/files_pr14687/m/MEGAHIT/MEGAHIT-1.2.9-GCCcore-11.2.0.eb (PR(s) #14687)
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== 2022-01-10 14:39:16,007 easyblock.py:303 INFO This is EasyBuild 4.5.2.dev0 (framework: 4.5.2.dev0, easyblocks: 4.5.2.dev0) on host node3274.victini.os. | |
== 2022-01-10 14:39:16,007 easyblock.py:309 INFO This is easyblock CMakeMake from module easybuild.easyblocks.generic.cmakemake (/user/gent/445/vsc44588/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/cmakemake.py) | |
== 2022-01-10 14:39:16,007 easyblock.py:947 INFO Build dir set to /tmp/vsc44588/easybuild/build/MEGAHIT/1.2.9/GCCcore-11.2.0 | |
== 2022-01-10 14:39:16,007 easyblock.py:1004 INFO Software install dir set to /scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/software/MEGAHIT/1.2.9-GCCcore-11.2.0 | |
== 2022-01-10 14:39:16,007 easyblock.py:1009 INFO Module install dir set to /scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/modules/all | |
== 2022-01-10 14:39:16,007 easyblock.py:278 INFO Init completed for application name MEGAHIT version 1.2.9 | |
== 2022-01-10 14:39:16,007 easyblock.py:3985 INFO Obtained application instance of for MEGAHIT (easyblock: CMakeMake) | |
== 2022-01-10 14:39:16,007 easyconfig.py:1686 INFO Generating template values... | |
== 2022-01-10 14:39:16,008 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='megahit', github_account='megahit', module_name='MEGAHIT/1.2.9-GCCcore-11.2.0', name='MEGAHIT', nameletter='M', nameletterlower='m', namelower='megahit', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='GCCcore', toolchain_version='11.2.0', version='1.2.9', version_major='1', version_major_minor='1.2', version_minor='2', versionprefix='', versionsuffix='' | |
== 2022-01-10 14:39:16,008 one.py:175 INFO Skipping reformatting value for parameter 'toolchain' | |
== 2022-01-10 14:39:16,009 filetools.py:1875 INFO Creating directory /tmp/vsc44588/eb-ewy1b63z/reprod_20220110143916_128283 (parents: True, set_gid: False, sticky: False) | |
== 2022-01-10 14:39:16,009 easyblock.py:4239 INFO Dumped easyconfig instance to /tmp/vsc44588/eb-ewy1b63z/reprod_20220110143916_128283/MEGAHIT-1.2.9-GCCcore-11.2.0.eb | |
== 2022-01-10 14:39:16,010 filetools.py:1875 INFO Creating directory /tmp/vsc44588/eb-ewy1b63z/reprod_20220110143916_128283/easyblocks (parents: True, set_gid: False, sticky: False) | |
== 2022-01-10 14:39:16,010 filetools.py:2388 INFO /user/gent/445/vsc44588/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py copied to /tmp/vsc44588/eb-ewy1b63z/reprod_20220110143916_128283/easyblocks/configuremake.py | |
== 2022-01-10 14:39:16,010 easyblock.py:4219 INFO Dumped easyblock configuremake.py required for reproduction to /tmp/vsc44588/eb-ewy1b63z/reprod_20220110143916_128283/easyblocks | |
== 2022-01-10 14:39:16,011 filetools.py:2388 INFO /user/gent/445/vsc44588/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/cmakemake.py copied to /tmp/vsc44588/eb-ewy1b63z/reprod_20220110143916_128283/easyblocks/cmakemake.py | |
== 2022-01-10 14:39:16,011 easyblock.py:4219 INFO Dumped easyblock cmakemake.py required for reproduction to /tmp/vsc44588/eb-ewy1b63z/reprod_20220110143916_128283/easyblocks | |
== 2022-01-10 14:39:16,012 easyblock.py:2077 INFO Number of iterations to perform for central part of installation procedure: 1 | |
== 2022-01-10 14:39:16,012 build_log.py:265 INFO building and installing MEGAHIT/1.2.9-GCCcore-11.2.0... | |
== 2022-01-10 14:39:16,012 filetools.py:1968 INFO Lock /scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_CO7_skylake-eth_software_MEGAHIT_1.2.9-GCCcore-11.2.0.lock does not exist | |
== 2022-01-10 14:39:16,012 filetools.py:1909 INFO Creating lock at /scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_CO7_skylake-eth_software_MEGAHIT_1.2.9-GCCcore-11.2.0.lock... | |
== 2022-01-10 14:39:16,013 filetools.py:1875 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_CO7_skylake-eth_software_MEGAHIT_1.2.9-GCCcore-11.2.0.lock (parents: True, set_gid: False, sticky: False) | |
== 2022-01-10 14:39:16,014 filetools.py:1918 INFO Lock created: /scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_CO7_skylake-eth_software_MEGAHIT_1.2.9-GCCcore-11.2.0.lock | |
== 2022-01-10 14:39:16,014 build_log.py:265 INFO fetching files... | |
== 2022-01-10 14:39:16,014 easyblock.py:3711 INFO Starting fetch step | |
== 2022-01-10 14:39:16,014 easyconfig.py:1686 INFO Generating template values... | |
== 2022-01-10 14:39:16,014 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='megahit', builddir='/tmp/vsc44588/easybuild/build/MEGAHIT/1.2.9/GCCcore-11.2.0', github_account='megahit', installdir='/scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/software/MEGAHIT/1.2.9-GCCcore-11.2.0', module_name='MEGAHIT/1.2.9-GCCcore-11.2.0', name='MEGAHIT', nameletter='M', nameletterlower='m', namelower='megahit', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='GCCcore', toolchain_version='11.2.0', version='1.2.9', version_major='1', version_major_minor='1.2', version_minor='2', versionprefix='', versionsuffix='' | |
== 2022-01-10 14:39:16,014 easyblock.py:3719 INFO Running method fetch_step part of step fetch | |
== 2022-01-10 14:39:16,014 easyblock.py:2199 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
== 2022-01-10 14:39:16,014 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/445/vsc44588/easybuild/easybuild-framework/eb | |
== 2022-01-10 14:39:16,015 tools.py:287 INFO Not considering /user/gent/445/vsc44588/easybuild (no easybuild/easyconfigs subdir found) | |
== 2022-01-10 14:39:16,015 tools.py:295 INFO Also considering installation prefix /vscmnt/gent_kyukon_home/_kyukon_home_gent/445/vsc44588/easybuild (via resolved path to 'eb')... | |
== 2022-01-10 14:39:16,035 easyblock.py:771 INFO Found file v1.2.9.tar.gz at /apps/gent/sources/m/MEGAHIT/v1.2.9.tar.gz | |
== 2022-01-10 14:39:16,035 easyblock.py:450 INFO Added sources: [{'name': 'v1.2.9.tar.gz', 'path': '/apps/gent/sources/m/MEGAHIT/v1.2.9.tar.gz', 'cmd': None, 'checksum': '09026eb07cc4e2d24f58b0a13f7a826ae8bb73da735a47cb1cbe6e4693118852', 'finalpath': '/tmp/vsc44588/easybuild/build/MEGAHIT/1.2.9/GCCcore-11.2.0'}] | |
== 2022-01-10 14:39:16,035 easyblock.py:2242 INFO no patches provided | |
== 2022-01-10 14:39:16,038 easyblock.py:2252 INFO md5 checksum for /apps/gent/sources/m/MEGAHIT/v1.2.9.tar.gz: 6ceee7a922a56687599b5aa135a7b155 | |
== 2022-01-10 14:39:16,041 easyblock.py:2252 INFO sha256 checksum for /apps/gent/sources/m/MEGAHIT/v1.2.9.tar.gz: 09026eb07cc4e2d24f58b0a13f7a826ae8bb73da735a47cb1cbe6e4693118852 | |
== 2022-01-10 14:39:16,042 easyblock.py:2287 INFO Checking dirs that need to be created: ['/scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/software/MEGAHIT/1.2.9-GCCcore-11.2.0', '/scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/modules/all/MEGAHIT', '/scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/modules/bio/MEGAHIT'] | |
== 2022-01-10 14:39:16,044 configuremake.py:93 INFO config.guess version: 2018-08-29 (last updated: 2022-01-05T13:28:09.666594, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c) | |
== 2022-01-10 14:39:16,044 configuremake.py:149 INFO Found config.guess at /data/gent/vo/001/gvo00117/easybuild/sources/generic/eb_v4.5.2.dev0/ConfigureMake/config.guess | |
== 2022-01-10 14:39:16,045 build_log.py:265 INFO ... (took < 1 sec) | |
== 2022-01-10 14:39:16,045 build_log.py:265 INFO creating build dir, resetting environment... | |
== 2022-01-10 14:39:16,045 easyblock.py:3711 INFO Starting ready step | |
== 2022-01-10 14:39:16,045 easyconfig.py:1686 INFO Generating template values... | |
== 2022-01-10 14:39:16,045 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='megahit', builddir='/tmp/vsc44588/easybuild/build/MEGAHIT/1.2.9/GCCcore-11.2.0', github_account='megahit', installdir='/scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/software/MEGAHIT/1.2.9-GCCcore-11.2.0', module_name='MEGAHIT/1.2.9-GCCcore-11.2.0', name='MEGAHIT', nameletter='M', nameletterlower='m', namelower='megahit', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='GCCcore', toolchain_version='11.2.0', version='1.2.9', version_major='1', version_major_minor='1.2', version_minor='2', versionprefix='', versionsuffix='' | |
== 2022-01-10 14:39:16,045 easyblock.py:3719 INFO Running method check_readiness_step part of step ready | |
== 2022-01-10 14:39:16,056 run.py:233 INFO running cmd: ulimit -u | |
== 2022-01-10 14:39:16,068 easyblock.py:2096 INFO Setting parallelism: 16 | |
== 2022-01-10 14:39:16,177 easyblock.py:2148 WARNING Loaded modules detected: ['cluster/victini', 'GCCcore/11.2.0', 'zlib/1.2.11-GCCcore-11.2.0', 'binutils/2.37-GCCcore-11.2.0', 'bzip2/1.0.8-GCCcore-11.2.0', 'ncurses/6.2-GCCcore-11.2.0', 'libreadline/8.1-GCCcore-11.2.0', 'Tcl/8.6.11-GCCcore-11.2.0', 'SQLite/3.36-GCCcore-11.2.0', 'XZ/5.2.5-GCCcore-11.2.0', 'GMP/6.2.1-GCCcore-11.2.0', 'libffi/3.4.2-GCCcore-11.2.0', 'OpenSSL/1.1', 'Python/3.9.6-GCCcore-11.2.0', 'gzip/1.10-GCCcore-11.2.0', 'MEGAHIT/1.2.9-GCCcore-11.2.0-Python-3.9.6'] | |
== 2022-01-10 14:39:16,619 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:124 in __init__): Module is already loaded (EBROOTMEGAHIT is set), installation cannot continue. (at easybuild/easybuild-framework/easybuild/framework/easyblock.py:2153 in check_readiness_step) | |
== 2022-01-10 14:39:16,619 build_log.py:265 INFO ... (took < 1 sec) | |
== 2022-01-10 14:39:16,619 filetools.py:1976 INFO Removing lock /scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_CO7_skylake-eth_software_MEGAHIT_1.2.9-GCCcore-11.2.0.lock... | |
== 2022-01-10 14:39:16,620 filetools.py:380 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_CO7_skylake-eth_software_MEGAHIT_1.2.9-GCCcore-11.2.0.lock successfully removed. | |
== 2022-01-10 14:39:16,621 filetools.py:1980 INFO Lock removed: /scratch/gent/vo/001/gvo00117/easybuild/CO7/skylake-eth/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_CO7_skylake-eth_software_MEGAHIT_1.2.9-GCCcore-11.2.0.lock | |
== 2022-01-10 14:39:16,621 easyblock.py:4042 WARNING build failed (first 300 chars): Module is already loaded (EBROOTMEGAHIT is set), installation cannot continue. | |
== 2022-01-10 14:39:16,621 easyblock.py:318 INFO Closing log for application name MEGAHIT version 1.2.9 |
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