Created
December 8, 2014 20:44
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SSP log after mnefun PR with specific EOG channel
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| Applying baseline correction ... (mode: mean) | |
| Applying baseline correction ... (mode: mean) | |
| 5 bad epochs dropped | |
| Loading and filtering 1 files. | |
| Opening raw data file /diskArray/data/clj/zc/sss_fif/zc_clj_01_raw_sss.fif... | |
| Current compensation grade : 0 | |
| Range : 26000 ... 941999 = 26.000 ... 941.999 secs | |
| Ready. | |
| Reading 0 ... 915999 = 0.000 ... 915.999 secs... | |
| [done] | |
| [Parallel(n_jobs=4)]: Done 1 out of 341 | elapsed: 0.3s remaining: 1.9min | |
| [Parallel(n_jobs=4)]: Done 67 out of 341 | elapsed: 6.3s remaining: 25.9s | |
| [Parallel(n_jobs=4)]: Done 136 out of 341 | elapsed: 12.6s remaining: 19.1s | |
| [Parallel(n_jobs=4)]: Done 205 out of 341 | elapsed: 18.8s remaining: 12.5s | |
| [Parallel(n_jobs=4)]: Done 274 out of 341 | elapsed: 24.9s remaining: 6.1s | |
| [Parallel(n_jobs=4)]: Done 341 out of 341 | elapsed: 30.8s finished | |
| 0 projection items deactivated | |
| Projections have already been applied. Doing nothing. | |
| Computing continuous projectors using ERM. | |
| Loading and filtering 1 files. | |
| Opening raw data file /diskArray/data/clj/zc/sss_fif/zc_clj_01_erm_raw_sss.fif... | |
| Current compensation grade : 0 | |
| Range : 11000 ... 311999 = 11.000 ... 311.999 secs | |
| Ready. | |
| Reading 0 ... 300999 = 0.000 ... 300.999 secs... | |
| [done] | |
| [Parallel(n_jobs=4)]: Done 1 out of 332 | elapsed: 0.1s remaining: 34.2s | |
| [Parallel(n_jobs=4)]: Done 66 out of 332 | elapsed: 1.4s remaining: 5.6s | |
| [Parallel(n_jobs=4)]: Done 133 out of 332 | elapsed: 2.9s remaining: 4.3s | |
| [Parallel(n_jobs=4)]: Done 200 out of 332 | elapsed: 4.3s remaining: 2.8s | |
| [Parallel(n_jobs=4)]: Done 267 out of 332 | elapsed: 5.7s remaining: 1.4s | |
| [Parallel(n_jobs=4)]: Done 332 out of 332 | elapsed: 7.1s finished | |
| 0 projection items deactivated | |
| Projections have already been applied. Doing nothing. | |
| Low-pass filtering at 5 Hz | |
| CUDA not used, CUDA has not been initialized, falling back to n_jobs=1 | |
| Projections have already been applied. Doing nothing. | |
| 0 projection items activated | |
| 300 matching events found | |
| Applying baseline correction ... (mode: mean) | |
| Applying baseline correction ... (mode: mean) | |
| Applying baseline correction ... (mode: mean) | |
| [...] | |
| Applying baseline correction ... (mode: mean) | |
| Applying baseline correction ... (mode: mean) | |
| Applying baseline correction ... (mode: mean) | |
| Adding projection: planar-Raw-0.000-301.000-PCA-01 | |
| Adding projection: axial-Raw-0.000-301.000-PCA-01 | |
| Computing ECG projectors. | |
| Band-pass filtering from 5 - 35 Hz | |
| CUDA not used, CUDA has not been initialized, falling back to n_jobs=1 | |
| 2 projection items deactivated | |
| Created an SSP operator (subspace dimension = 2) | |
| 2 projection items activated | |
| SSP projectors applied... | |
| Running ECG SSP computation | |
| Using channel ECG063 to identify heart beats | |
| Number of ECG events detected : 961 (average pulse 62 / min.) | |
| Computing projector | |
| Created an SSP operator (subspace dimension = 2) | |
| 2 projection items activated | |
| 961 matching events found | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| Rejecting epoch based on EOG : ['EOG062'] | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| Rejecting epoch based on EOG : ['EOG062'] | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| Rejecting epoch based on EOG : ['EOG062'] | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| No baseline correction applied... | |
| 3 bad epochs dropped | |
| Adding projection: planar-999--0.080-0.080-PCA-01 | |
| Adding projection: axial-999--0.080-0.080-PCA-01 | |
| Done. | |
| Low-pass filtering at 55 Hz | |
| CUDA not used, CUDA has not been initialized, falling back to n_jobs=1 | |
| 4 projection items deactivated | |
| Created an SSP operator (subspace dimension = 4) | |
| 4 projection items activated | |
| SSP projectors applied... | |
| Created an SSP operator (subspace dimension = 4) | |
| 4 projection items activated | |
| 763 matching events found | |
| Applying baseline correction ... (mode: mean) | |
| Applying baseline correction ... (mode: mean) | |
| Applying baseline correction ... (mode: mean) | |
| Applying baseline correction ... (mode: mean) | |
| Applying baseline correction ... (mode: mean) | |
| 1 bad epochs dropped | |
| (0:06:56.499) | |
| Applying preprocessing. | |
| Applying processing to subject 1/1. | |
| Read a total of 4 projection items: | |
| planar-Raw-0.000-301.000-PCA-01 (1 x 204) idle | |
| axial-Raw-0.000-301.000-PCA-01 (1 x 102) idle | |
| ECG-planar-999--0.080-0.080-PCA-01 (1 x 204) idle | |
| ECG-axial-999--0.080-0.080-PCA-01 (1 x 102) idle | |
| Processing erm file 1/1. | |
| Opening raw data file /diskArray/data/clj/zc/sss_fif/zc_clj_01_erm_raw_sss.fif... | |
| Current compensation grade : 0 | |
| Range : 11000 ... 311999 = 11.000 ... 311.999 secs | |
| Ready. | |
| Reading 0 ... 300999 = 0.000 ... 300.999 secs... | |
| [done] | |
| Low-pass filtering at 55 Hz | |
| CUDA not used, CUDA has not been initialized, falling back to n_jobs=1 | |
| 4 projection items deactivated | |
| Writing /diskArray/data/clj/zc/sss_pca_fif/zc_clj_01_erm_allclean_fil55_raw_sss.fif | |
| Writing ... | |
| Writing ... | |
| Writing ... | |
| Writing ... | |
| Writing ... | |
| Writing ... | |
| Writing ... | |
| Writing ... | |
| Closing /diskArray/data/clj/zc/sss_pca_fif/zc_clj_01_erm_allclean_fil55_raw_sss.fif [done] | |
| Processing file 1/1. | |
| Opening raw data file /diskArray/data/clj/zc/sss_fif/zc_clj_01_raw_sss.fif... | |
| Current compensation grade : 0 | |
| Range : 26000 ... 941999 = 26.000 ... 941.999 secs | |
| Ready. | |
| Reading 0 ... 915999 = 0.000 ... 915.999 secs... | |
| [done] | |
| Low-pass filtering at 55 Hz | |
| CUDA not used, CUDA has not been initialized, falling back to n_jobs=1 | |
| 4 projection items deactivated | |
| Writing /diskArray/data/clj/zc/sss_pca_fif/zc_clj_01_allclean_fil55_raw_sss.fif | |
| Writing ... | |
| Writing ... | |
| Writing ... | |
| Writing ... | |
| Writing ... | |
| Closing /diskArray/data/clj/zc/sss_pca_fif/zc_clj_01_allclean_fil55_raw_sss.fif [done] | |
| (0:03:26.815) | |
| Doing epoch EQ/DQ. | |
| Loading raw files for subject zc. | |
| Opening raw data file /diskArray/data/clj/zc/sss_pca_fif/zc_clj_01_allclean_fil55_raw_sss.fif... | |
| Read a total of 4 projection items: | |
| planar-Raw-0.000-301.000-PCA-01 (1 x 204) idle | |
| axial-Raw-0.000-301.000-PCA-01 (1 x 102) idle | |
| ECG-planar-999--0.080-0.080-PCA-01 (1 x 204) idle | |
| ECG-axial-999--0.080-0.080-PCA-01 (1 x 102) idle | |
| Current compensation grade : 0 | |
| Range : 26000 ... 941999 = 26.000 ... 941.999 secs | |
| Ready. | |
| Opening raw data file /diskArray/data/clj/zc/sss_pca_fif/zc_clj_01_allclean_fil55_raw_sss.fif... | |
| Read a total of 4 projection items: | |
| planar-Raw-0.000-301.000-PCA-01 (1 x 204) idle | |
| axial-Raw-0.000-301.000-PCA-01 (1 x 102) idle | |
| ECG-planar-999--0.080-0.080-PCA-01 (1 x 204) idle | |
| ECG-axial-999--0.080-0.080-PCA-01 (1 x 102) idle | |
| Current compensation grade : 0 | |
| Range : 26000 ... 941999 = 26.000 ... 941.999 secs | |
| Ready. | |
| Epoching data. | |
| Created an SSP operator (subspace dimension = 4) | |
| 4 projection items activated | |
| 600 matching events found | |
| Reading 13251 ... 14451 = 13.251 ... 14.451 secs... | |
| [done] | |
| Applying baseline correction ... (mode: mean) | |
| Reading 14793 ... 15993 = 14.793 ... 15.993 secs... | |
| [done] | |
| Applying baseline correction ... (mode: mean) | |
| Reading 16354 ... 17554 = 16.354 ... 17.554 secs... | |
| [done] | |
| Applying baseline correction ... (mode: mean) | |
| Reading 17904 ... 19104 = 17.904 ... 19.104 secs... | |
| Applying baseline correction ... (mode: mean) | |
| Reading 426820 ... 428020 = 426.820 ... 428.020 secs... | |
| [done] | |
| Applying baseline correction ... (mode: mean) | |
| Reading 428315 ... 429515 = 428.315 ... 429.515 secs... | |
| [done] | |
| Applying baseline correction ... (mode: mean) | |
| Reading 429795 ... 430995 = 429.795 ... 430.995 secs... | |
| [done] | |
| Applying baseline correction ... (mode: mean) | |
| Reading 431271 ... 432471 = 431.271 ... 432.471 secs... | |
| [done] | |
| Applying baseline correction ... (mode: mean) | |
| Reading 910973 ... 912173 = 910.973 ... 912.173 secs... | |
| [done] | |
| Applying baseline correction ... (mode: mean) | |
| Reading 912497 ... 913697 = 912.497 ... 913.697 secs... | |
| [done] | |
| Applying baseline correction ... (mode: mean) | |
| 0 bad epochs dropped | |
| ### This is where the last step starts; probably to do with my configuration | |
| Saving evoked data to disk. | |
| Dropped 0 epochs | |
| Traceback (most recent call last): | |
| File "megpipe.py", line 104, in <module> | |
| write_epochs=True, # Write epochs to disk | |
| File "/home/jasperb/Projects/mnefun/mnefun/_mnefun.py", line 282, in do_processing | |
| p.must_match) | |
| File "/home/jasperb/Projects/mnefun/mnefun/_mnefun.py", line 823, in save_epochs | |
| copy=False) | |
| File "/usr/local/lib/python2.7/dist-packages/mne/epochs.py", line 1739, in combine_event_ids | |
| raise ValueError('new_event_id value must not already exist') | |
| ValueError: new_event_id value must not already exist | |
| root@af298c611c51:/home/jasperb/Projects/science/python/clj# |
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