Created
December 20, 2018 15:23
-
-
Save JimHokanson/dfecf21bde0bb7f2484adaf3c646b91a to your computer and use it in GitHub Desktop.
Shows how to read parts of a file using TDMS_reader
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
%Code: https://www.mathworks.com/matlabcentral/fileexchange/30023-tdms-reader | |
file_path = 'D:\repos\SVN_FOLDERS\Labview\TDT_Controller\Modules\ENG Recorder\Data\Block-003_ENG.tdms'; | |
%TDMS file and index at (download index to speed up reading) | |
%https://drive.google.com/drive/folders/1iiwPMvn5l5nrMOwrt5sSBYrCm7SyJAi1?usp=sharing | |
%This file contains: | |
%/'Data'/'Trigger' | |
%/'Data'/'Distal' | |
%/'Data'/'Proximal' | |
og = struct; | |
og.fullPathsKeep = {'/''Data''/''Trigger'''}; | |
%Get Trigger data in one pass | |
%----------------------------------------- | |
%Based on looking through TDMS_handleGetDataOption | |
tic | |
data = TDMS_getStruct(file_path,4,{'GET_DATA_OPTION','getsubset','OBJECTS_GET',og}); | |
toc | |
%Read meta data then get more data later ... | |
%-------------------------------------------------- | |
%Only get the meta data - we can then read more info later | |
tic | |
[~,m] = TDMS_readTDMSFile(file_path,'GET_DATA_OPTION','getnone'); | |
toc | |
tic | |
%Pass in the previously parsed meta data - speeds up reading | |
temp = TDMS_readTDMSFile(file_path,'META_STRUCT',m,'GET_DATA_OPTION','getsubset','OBJECTS_GET',og); | |
data = TDMS_dataToGroupChanStruct_v4(temp); | |
toc | |
%OR - this combines the two calls above readTDMSFile and dataToGroupChanStruct_v4 | |
tic | |
data = TDMS_getStruct(file_path,4,{'META_STRUCT',m,'GET_DATA_OPTION','getsubset','OBJECTS_GET',og}); | |
toc | |
%Get the proximal and distal channels reusing the meta data parsing ... | |
og.fullPathsKeep = {'/''Data''/''Proximal''' '/''Data''/''Distal'''}; | |
data2 = TDMS_getStruct(file_path,4,{'META_STRUCT',m,'GET_DATA_OPTION','getsubset','OBJECTS_GET',og}); | |
%THe actual proximal data - need to dive down - note this shows us | |
%the group name ('Data') and channel name ('Proximal') | |
prox = data2.Data.Proximal.data; | |
%Read only the 'Data' group - this doesn't make much sense for this | |
%file because we only have a 'Data' group | |
og = struct; | |
og.groupsKeep = 'Data'; | |
data = TDMS_getStruct(file_path,4,{'GET_DATA_OPTION','getsubset','OBJECTS_GET',og}); | |
%Subset retrieval | |
%------------------------------------------------------------- | |
og = struct; | |
og.fullPathsKeep = {'/''Data''/''Trigger'''}; | |
n_data_trigger = m.numberDataPoints(strcmp(og.fullPathsKeep{1},m.objectNameList)); | |
%2237789 | |
start_index = 10000; | |
%Note this relies on SUBSET_IS_LENGTH=true which is the default | |
n_samples_get = 50000; | |
subset_get = [start_index n_samples_get]; | |
data3 = TDMS_getStruct(file_path,4,{'META_STRUCT',m,'GET_DATA_OPTION','getsubset','OBJECTS_GET',og,'SUBSET_GET',subset_get}); | |
plot(data.Data.Trigger.data) | |
hold on | |
plot(subset_get(1):subset_get(1)+subset_get(2)-1,data3.Data.Trigger.data) | |
hold off | |
%subset_get applies to multiple channels | |
og = struct; | |
og.fullPathsKeep = {'/''Data''/''Trigger''' '/''Data''/''Distal'''}; | |
%Now we are going to make the 2nd index a stop... | |
subset_get = [100000 400000]; | |
data3 = TDMS_getStruct(file_path,4,{'META_STRUCT',m,'GET_DATA_OPTION','getsubset','OBJECTS_GET',og,'SUBSET_GET',subset_get,'SUBSET_IS_LENGTH',false}); | |
subplot(2,1,1) | |
plot(data.Data.Trigger.data) | |
hold on | |
plot(subset_get(1):subset_get(2),data3.Data.Trigger.data) | |
hold off | |
subplot(2,1,2) | |
plot(data2.Data.Distal.data) | |
hold on | |
plot(subset_get(1):subset_get(2),data3.Data.Distal.data) | |
hold off | |
%Now let's retrieve different ranges from different channels | |
%--------------------------------------------------------------- | |
gi = struct; | |
gi(1).group = 'Data'; | |
gi(1).channel = 'Trigger'; | |
gi(1).indices = [1e5 2e5]; %start and stop indices - subset_is_length is false | |
gi(2).group = 'Data'; | |
gi(2).channel = 'Distal'; | |
gi(2).indices = [2e5 3e5]; | |
%'GET_DATA_OPTION','getsubset' <= remove this, just leave as normal | |
data4 = TDMS_getStruct(file_path,4,{'META_STRUCT',m,'GET_INDICES',gi,'SUBSET_IS_LENGTH',false}); | |
subplot(2,1,1) | |
plot(data.Data.Trigger.data) | |
hold on | |
plot(1e5:2e5,data4.Data.Trigger.data) | |
hold off | |
subplot(2,1,2) | |
plot(data2.Data.Distal.data) | |
hold on | |
plot(2e5:3e5,data4.Data.Distal.data) | |
hold off | |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment