Skip to content

Instantly share code, notes, and snippets.

@JoaoRodrigues

JoaoRodrigues/peptide_wt_pymol_cap_CONECT.pdb

Created April 16, 2018 22:26
Show Gist options
  • Save JoaoRodrigues/ce75bc81191fc68eef72b26019382ed2 to your computer and use it in GitHub Desktop.
Save JoaoRodrigues/ce75bc81191fc68eef72b26019382ed2 to your computer and use it in GitHub Desktop.
Download ZIP
Raw
peptide_wt_pymol_cap_CONECT.pdb
REMARK 200 Generated with PyMOL and psico
ATOM 1 CY MET A 1 -57.588 1.993 21.439 1.00 0.00 C
ATOM 2 OY MET A 1 -58.412 1.073 21.529 1.00 0.00 O
ATOM 3 CAY MET A 1 -57.792 3.297 22.180 1.00 0.00 C
ATOM 4 N MET A 1 -56.540 1.838 20.704 1.00 0.00 N
ATOM 5 CA MET A 1 -56.332 0.585 19.985 1.00 0.00 C
ATOM 6 C MET A 1 -54.885 0.158 20.046 1.00 0.00 C
ATOM 7 O MET A 1 -54.053 0.864 20.614 1.00 0.00 O
ATOM 8 CB MET A 1 -56.802 0.738 18.512 1.00 0.00 C
ATOM 9 CG MET A 1 -58.316 0.961 18.308 1.00 0.00 C
ATOM 10 SD MET A 1 -59.227 -0.495 18.847 1.00 0.00 S
ATOM 11 CE MET A 1 -59.735 0.095 20.468 1.00 0.00 C
ATOM 12 N ASP A 2 -54.577 -0.988 19.461 1.00 0.00 N
ATOM 13 CA ASP A 2 -53.212 -1.494 19.460 1.00 0.00 C
ATOM 14 C ASP A 2 -52.460 -0.978 18.237 1.00 0.00 C
ATOM 15 O ASP A 2 -52.763 -1.352 17.104 1.00 0.00 O
ATOM 16 CB ASP A 2 -53.214 -3.024 19.482 1.00 0.00 C
ATOM 17 CG ASP A 2 -51.913 -3.602 20.006 1.00 0.00 C
ATOM 18 OD1 ASP A 2 -51.053 -3.988 19.189 1.00 0.00 O
ATOM 19 OD2 ASP A 2 -51.749 -3.688 21.241 1.00 0.00 O1-
ATOM 20 N TYR A 3 -51.494 -0.102 18.468 1.00 0.00 N
ATOM 21 CA TYR A 3 -50.710 0.473 17.381 1.00 0.00 C
ATOM 22 C TYR A 3 -49.312 -0.131 17.353 1.00 0.00 C
ATOM 23 O TYR A 3 -48.747 -0.446 18.401 1.00 0.00 O
ATOM 24 CB TYR A 3 -50.609 1.991 17.541 1.00 0.00 C
ATOM 25 CG TYR A 3 -51.914 2.662 17.905 1.00 0.00 C
ATOM 26 CD1 TYR A 3 -52.980 2.687 17.012 1.00 0.00 C
ATOM 27 CD2 TYR A 3 -52.082 3.271 19.143 1.00 0.00 C
ATOM 28 CE1 TYR A 3 -54.171 3.298 17.343 1.00 0.00 C
ATOM 29 CE2 TYR A 3 -53.273 3.885 19.479 1.00 0.00 C
ATOM 30 CZ TYR A 3 -54.313 3.894 18.574 1.00 0.00 C
ATOM 31 OH TYR A 3 -55.505 4.495 18.904 1.00 0.00 O
ATOM 32 N GLN A 4 -48.758 -0.284 16.157 1.00 0.00 N
ATOM 33 CA GLN A 4 -47.425 -0.854 15.993 1.00 0.00 C
ATOM 34 C GLN A 4 -46.651 -0.121 14.904 1.00 0.00 C
ATOM 35 O GLN A 4 -45.756 -0.684 14.269 1.00 0.00 O
ATOM 36 CB GLN A 4 -47.519 -2.337 15.644 1.00 0.00 C
ATOM 37 CG GLN A 4 -48.465 -2.633 14.490 1.00 0.00 C
ATOM 38 CD GLN A 4 -48.261 -4.019 13.919 1.00 0.00 C
ATOM 39 NE2 GLN A 4 -47.421 -4.128 12.899 1.00 0.00 N
ATOM 40 OE1 GLN A 4 -48.854 -4.987 14.389 1.00 0.00 O
ATOM 41 N VAL A 5 -46.998 1.137 14.690 1.00 0.00 N
ATOM 42 CA VAL A 5 -46.334 1.943 13.676 1.00 0.00 C
ATOM 43 C VAL A 5 -45.291 2.861 14.320 1.00 0.00 C
ATOM 44 O VAL A 5 -45.536 3.458 15.368 1.00 0.00 O
ATOM 45 CB VAL A 5 -47.353 2.763 12.842 1.00 0.00 C
ATOM 46 CG1 VAL A 5 -48.068 3.800 13.697 1.00 0.00 C
ATOM 47 CG2 VAL A 5 -46.677 3.422 11.648 1.00 0.00 C
ATOM 48 N SER A 6 -44.116 2.943 13.711 1.00 0.00 N
ATOM 49 CA SER A 6 -43.041 3.777 14.238 1.00 0.00 C
ATOM 50 C SER A 6 -42.629 4.839 13.226 1.00 0.00 C
ATOM 51 O SER A 6 -41.505 5.340 13.266 1.00 0.00 O
ATOM 52 CB SER A 6 -41.837 2.905 14.597 1.00 0.00 C
ATOM 53 OG SER A 6 -42.249 1.716 15.250 1.00 0.00 O
ATOM 54 N SER A 7 -43.560 5.185 12.341 1.00 0.00 N
ATOM 55 CA SER A 7 -43.323 6.173 11.291 1.00 0.00 C
ATOM 56 C SER A 7 -42.244 5.681 10.323 1.00 0.00 C
ATOM 57 O SER A 7 -41.052 5.915 10.521 1.00 0.00 O
ATOM 58 CB SER A 7 -42.953 7.533 11.896 1.00 0.00 C
ATOM 59 OG SER A 7 -43.946 7.962 12.821 1.00 0.00 O
ATOM 60 N PRO A 8 -42.660 4.964 9.267 1.00 0.00 N
ATOM 61 CA PRO A 8 -41.740 4.414 8.269 1.00 0.00 C
ATOM 62 C PRO A 8 -41.137 5.494 7.371 1.00 0.00 C
ATOM 63 O PRO A 8 -41.811 6.039 6.494 1.00 0.00 O
ATOM 64 CB PRO A 8 -42.624 3.460 7.459 1.00 0.00 C
ATOM 65 CG PRO A 8 -44.011 3.969 7.620 1.00 0.00 C
ATOM 66 CD PRO A 8 -44.067 4.643 8.965 1.00 0.00 C
ATOM 67 N ILE A 9 -39.866 5.805 7.607 1.00 0.00 N
ATOM 68 CA ILE A 9 -39.162 6.813 6.821 1.00 0.00 C
ATOM 69 C ILE A 9 -37.768 6.327 6.418 1.00 0.00 C
ATOM 70 O ILE A 9 -36.798 7.083 6.456 1.00 0.00 O
ATOM 71 CB ILE A 9 -39.051 8.164 7.572 1.00 0.00 C
ATOM 72 CG1 ILE A 9 -38.948 7.969 9.093 1.00 0.00 C
ATOM 73 CG2 ILE A 9 -40.240 9.051 7.239 1.00 0.00 C
ATOM 74 CD1 ILE A 9 -37.573 7.554 9.568 1.00 0.00 C
ATOM 75 N TYR A 10 -37.693 5.045 6.049 1.00 0.00 N
ATOM 76 CA TYR A 10 -36.449 4.389 5.611 1.00 0.00 C
ATOM 77 C TYR A 10 -35.473 4.150 6.752 1.00 0.00 C
ATOM 78 O TYR A 10 -35.032 3.024 6.946 1.00 0.00 O
ATOM 79 CB TYR A 10 -35.756 5.160 4.488 1.00 0.00 C
ATOM 80 CG TYR A 10 -36.484 5.063 3.175 1.00 0.00 C
ATOM 81 CD1 TYR A 10 -36.308 3.969 2.333 1.00 0.00 C
ATOM 82 CD2 TYR A 10 -37.365 6.055 2.789 1.00 0.00 C
ATOM 83 CE1 TYR A 10 -36.996 3.869 1.143 1.00 0.00 C
ATOM 84 CE2 TYR A 10 -38.053 5.970 1.604 1.00 0.00 C
ATOM 85 CZ TYR A 10 -37.872 4.879 0.779 1.00 0.00 C
ATOM 86 OH TYR A 10 -38.578 4.795 -0.405 1.00 0.00 O
ATOM 87 O1S TYR A 10 -39.832 6.847 -0.534 1.00 0.00 O
ATOM 88 O2S TYR A 10 -40.535 4.945 -1.772 1.00 0.00 O
ATOM 89 O3S TYR A 10 -40.758 4.957 0.607 1.00 0.00 O
ATOM 90 S TYR A 10 -39.924 5.382 -0.519 1.00 0.00 S
ATOM 91 N ASP A 11 -35.151 5.198 7.507 1.00 0.00 N
ATOM 92 CA ASP A 11 -34.210 5.094 8.628 1.00 0.00 C
ATOM 93 C ASP A 11 -34.640 4.016 9.618 1.00 0.00 C
ATOM 94 O ASP A 11 -33.822 3.485 10.369 1.00 0.00 O
ATOM 95 CB ASP A 11 -34.076 6.441 9.348 1.00 0.00 C
ATOM 96 CG ASP A 11 -33.262 7.448 8.560 1.00 0.00 C
ATOM 97 OD1 ASP A 11 -32.038 7.543 8.786 1.00 0.00 O
ATOM 98 OD2 ASP A 11 -33.837 8.145 7.703 1.00 0.00 O1-
ATOM 99 N ILE A 12 -35.925 3.694 9.611 1.00 0.00 N
ATOM 100 CA ILE A 12 -36.457 2.677 10.495 1.00 0.00 C
ATOM 101 C ILE A 12 -36.872 1.434 9.677 1.00 0.00 C
ATOM 102 O ILE A 12 -36.027 0.879 8.983 1.00 0.00 O
ATOM 103 CB ILE A 12 -37.616 3.253 11.356 1.00 0.00 C
ATOM 104 CG1 ILE A 12 -37.149 4.547 12.028 1.00 0.00 C
ATOM 105 CG2 ILE A 12 -38.065 2.253 12.422 1.00 0.00 C
ATOM 106 CD1 ILE A 12 -38.277 5.412 12.542 1.00 0.00 C
ATOM 107 N ASN A 13 -38.160 1.044 9.733 1.00 0.00 N
ATOM 108 CA ASN A 13 -38.722 -0.138 9.040 1.00 0.00 C
ATOM 109 C ASN A 13 -37.909 -0.605 7.824 1.00 0.00 C
ATOM 110 O ASN A 13 -37.280 -1.662 7.874 1.00 0.00 O
ATOM 111 CB ASN A 13 -40.178 0.141 8.631 1.00 0.00 C
ATOM 112 CG ASN A 13 -41.084 0.389 9.822 1.00 0.00 C
ATOM 113 ND2 ASN A 13 -41.842 -0.620 10.223 1.00 0.00 N
ATOM 114 OD1 ASN A 13 -41.111 1.494 10.369 1.00 0.00 O
ATOM 115 N TYR A 14 -37.929 0.179 6.745 1.00 0.00 N
ATOM 116 CA TYR A 14 -37.199 -0.138 5.522 1.00 0.00 C
ATOM 117 C TYR A 14 -35.775 -0.618 5.807 1.00 0.00 C
ATOM 118 O TYR A 14 -35.396 -1.730 5.437 1.00 0.00 O
ATOM 119 CB TYR A 14 -37.136 1.098 4.618 1.00 0.00 C
ATOM 120 CG TYR A 14 -37.686 0.889 3.235 1.00 0.00 C
ATOM 121 CD1 TYR A 14 -38.898 1.451 2.848 1.00 0.00 C
ATOM 122 CD2 TYR A 14 -36.974 0.166 2.306 1.00 0.00 C
ATOM 123 CE1 TYR A 14 -39.378 1.291 1.563 1.00 0.00 C
ATOM 124 CE2 TYR A 14 -37.448 -0.010 1.032 1.00 0.00 C
ATOM 125 CZ TYR A 14 -38.651 0.556 0.654 1.00 0.00 C
ATOM 126 OH TYR A 14 -39.102 0.422 -0.650 1.00 0.00 O
ATOM 127 O1S TYR A 14 -41.481 0.256 -0.285 1.00 0.00 O
ATOM 128 O2S TYR A 14 -40.193 -1.722 -0.616 1.00 0.00 O
ATOM 129 O3S TYR A 14 -40.569 -0.218 -2.425 1.00 0.00 O
ATOM 130 S TYR A 14 -40.329 -0.315 -0.986 1.00 0.00 S
ATOM 131 N TYR A 15 -34.998 0.211 6.487 1.00 0.00 N
ATOM 132 CA TYR A 15 -33.612 -0.119 6.785 1.00 0.00 C
ATOM 133 C TYR A 15 -33.450 -0.544 8.236 1.00 0.00 C
ATOM 134 O TYR A 15 -32.554 -0.065 8.934 1.00 0.00 O
ATOM 135 CB TYR A 15 -32.687 1.073 6.479 1.00 0.00 C
ATOM 136 CG TYR A 15 -32.819 1.639 5.074 1.00 0.00 C
ATOM 137 CD1 TYR A 15 -33.514 0.956 4.091 1.00 0.00 C
ATOM 138 CD2 TYR A 15 -32.248 2.860 4.738 1.00 0.00 C
ATOM 139 CE1 TYR A 15 -33.640 1.459 2.819 1.00 0.00 C
ATOM 140 CE2 TYR A 15 -32.369 3.375 3.459 1.00 0.00 C
ATOM 141 CZ TYR A 15 -33.069 2.670 2.504 1.00 0.00 C
ATOM 142 OH TYR A 15 -33.191 3.171 1.228 1.00 0.00 O
ATOM 143 N THR A 16 -34.330 -1.432 8.699 1.00 0.00 N
ATOM 144 CA THR A 16 -34.242 -1.940 10.064 1.00 0.00 C
ATOM 145 C THR A 16 -32.949 -2.724 10.255 1.00 0.00 C
ATOM 146 O THR A 16 -32.500 -2.964 11.376 1.00 0.00 O
ATOM 147 CB THR A 16 -35.432 -2.852 10.403 1.00 0.00 C
ATOM 148 CG2 THR A 16 -36.537 -2.068 11.090 1.00 0.00 C
ATOM 149 OG1 THR A 16 -35.934 -3.463 9.205 1.00 0.00 O
ATOM 150 N SER A 17 -32.367 -3.107 9.136 1.00 0.00 N
ATOM 151 CA SER A 17 -31.130 -3.860 9.108 1.00 0.00 C
ATOM 152 C SER A 17 -29.934 -2.951 9.398 1.00 0.00 C
ATOM 153 O SER A 17 -29.569 -2.103 8.583 1.00 0.00 O
ATOM 154 CB SER A 17 -30.997 -4.538 7.745 1.00 0.00 C
ATOM 155 OG SER A 17 -32.125 -5.362 7.495 1.00 0.00 O
ATOM 156 N GLU A 18 -29.367 -3.131 10.589 1.00 0.00 N
ATOM 157 CA GLU A 18 -28.216 -2.358 11.070 1.00 0.00 C
ATOM 158 C GLU A 18 -27.131 -2.146 9.999 1.00 0.00 C
ATOM 159 O GLU A 18 -26.563 -3.100 9.461 1.00 0.00 O
ATOM 160 CB GLU A 18 -27.610 -3.058 12.292 1.00 0.00 C
ATOM 161 CG GLU A 18 -27.179 -4.492 12.020 1.00 0.00 C
ATOM 162 CD GLU A 18 -26.777 -5.235 13.271 1.00 0.00 C
ATOM 163 OE1 GLU A 18 -27.671 -5.728 13.988 1.00 0.00 O
ATOM 164 OE2 GLU A 18 -25.563 -5.355 13.532 1.00 0.00 O1-
ATOM 165 N PRO A 19 -26.849 -0.877 9.661 1.00 0.00 N
ATOM 166 CA PRO A 19 -25.827 -0.517 8.686 1.00 0.00 C
ATOM 167 C PRO A 19 -24.480 -0.227 9.355 1.00 0.00 C
ATOM 168 O PRO A 19 -24.252 -0.624 10.500 1.00 0.00 O
ATOM 169 CB PRO A 19 -26.410 0.751 8.075 1.00 0.00 C
ATOM 170 CG PRO A 19 -27.186 1.401 9.175 1.00 0.00 C
ATOM 171 CD PRO A 19 -27.535 0.322 10.176 1.00 0.00 C
ATOM 172 N CYS A 20 -23.594 0.465 8.650 1.00 0.00 N
ATOM 173 CA CYS A 20 -22.289 0.806 9.198 1.00 0.00 C
ATOM 174 C CYS A 20 -21.904 2.219 8.776 1.00 0.00 C
ATOM 175 O CYS A 20 -22.308 2.688 7.713 1.00 0.00 O
ATOM 176 CB CYS A 20 -21.231 -0.199 8.735 1.00 0.00 C
ATOM 177 SG CYS A 20 -19.707 -0.207 9.744 1.00 0.00 S
ATOM 178 N GLN A 21 -21.138 2.899 9.617 1.00 0.00 N
ATOM 179 CA GLN A 21 -20.713 4.265 9.329 1.00 0.00 C
ATOM 180 C GLN A 21 -19.250 4.477 9.710 1.00 0.00 C
ATOM 181 O GLN A 21 -18.779 3.961 10.725 1.00 0.00 O
ATOM 182 CB GLN A 21 -21.602 5.283 10.059 1.00 0.00 C
ATOM 183 CG GLN A 21 -22.017 4.861 11.463 1.00 0.00 C
ATOM 184 CD GLN A 21 -23.332 4.098 11.482 1.00 0.00 C
ATOM 185 NE2 GLN A 21 -23.512 3.245 12.479 1.00 0.00 N
ATOM 186 OE1 GLN A 21 -24.179 4.275 10.605 1.00 0.00 O
ATOM 187 N LYS A 22 -18.536 5.236 8.881 1.00 0.00 N
ATOM 188 CA LYS A 22 -17.124 5.524 9.107 1.00 0.00 C
ATOM 189 C LYS A 22 -16.829 7.002 8.846 1.00 0.00 C
ATOM 190 O LYS A 22 -15.910 7.338 8.098 1.00 0.00 O
ATOM 191 CB LYS A 22 -16.247 4.660 8.186 1.00 0.00 C
ATOM 192 CG LYS A 22 -16.301 3.160 8.471 1.00 0.00 C
ATOM 193 CD LYS A 22 -15.766 2.804 9.856 1.00 0.00 C
ATOM 194 CE LYS A 22 -14.268 3.062 9.989 1.00 0.00 C
ATOM 195 NZ LYS A 22 -13.471 2.354 8.951 1.00 0.00 N1+
ATOM 196 N ILE A 23 -17.594 7.883 9.473 1.00 0.00 N
ATOM 197 CA ILE A 23 -17.410 9.323 9.278 1.00 0.00 C
ATOM 198 C ILE A 23 -16.850 9.981 10.535 1.00 0.00 C
ATOM 199 O ILE A 23 -16.873 11.202 10.677 1.00 0.00 O
ATOM 200 CB ILE A 23 -18.734 10.031 8.888 1.00 0.00 C
ATOM 201 CG1 ILE A 23 -19.617 9.110 8.039 1.00 0.00 C
ATOM 202 CG2 ILE A 23 -18.438 11.321 8.128 1.00 0.00 C
ATOM 203 CD1 ILE A 23 -21.077 9.515 8.019 1.00 0.00 C
ATOM 204 N ASN A 24 -16.325 9.176 11.437 1.00 0.00 N
ATOM 205 CA ASN A 24 -15.778 9.704 12.682 1.00 0.00 C
ATOM 206 C ASN A 24 -14.268 9.861 12.612 1.00 0.00 C
ATOM 207 O ASN A 24 -13.665 10.539 13.440 1.00 0.00 O
ATOM 208 CB ASN A 24 -16.155 8.806 13.856 1.00 0.00 C
ATOM 209 CG ASN A 24 -17.086 9.499 14.829 1.00 0.00 C
ATOM 210 ND2 ASN A 24 -18.035 8.756 15.368 1.00 0.00 N
ATOM 211 OD1 ASN A 24 -16.956 10.694 15.092 1.00 0.00 O
ATOM 212 N VAL A 25 -13.661 9.242 11.618 1.00 0.00 N
ATOM 213 CA VAL A 25 -12.212 9.312 11.457 1.00 0.00 C
ATOM 214 C VAL A 25 -11.808 10.303 10.362 1.00 0.00 C
ATOM 215 O VAL A 25 -10.657 10.737 10.294 1.00 0.00 O
ATOM 216 CB VAL A 25 -11.618 7.924 11.135 1.00 0.00 C
ATOM 217 CG1 VAL A 25 -10.101 7.961 11.197 1.00 0.00 C
ATOM 218 CG2 VAL A 25 -12.163 6.868 12.088 1.00 0.00 C
ATOM 219 N LYS A 26 -12.773 10.692 9.543 1.00 0.00 N
ATOM 220 CA LYS A 26 -12.524 11.611 8.434 1.00 0.00 C
ATOM 221 C LYS A 26 -11.907 12.926 8.915 1.00 0.00 C
ATOM 222 O LYS A 26 -10.839 13.315 8.447 1.00 0.00 O
ATOM 223 CB LYS A 26 -13.821 11.873 7.664 1.00 0.00 C
ATOM 224 CG LYS A 26 -13.668 12.881 6.532 1.00 0.00 C
ATOM 225 CD LYS A 26 -14.543 12.532 5.335 1.00 0.00 C
ATOM 226 CE LYS A 26 -13.812 11.636 4.344 1.00 0.00 C
ATOM 227 NZ LYS A 26 -13.440 12.361 3.099 1.00 0.00 N1+
ATOM 228 N GLN A 27 -12.550 13.596 9.885 1.00 0.00 N
ATOM 229 CA GLN A 27 -12.048 14.874 10.381 1.00 0.00 C
ATOM 230 C GLN A 27 -10.745 14.694 11.123 1.00 0.00 C
ATOM 231 O GLN A 27 -10.635 13.760 11.945 1.00 0.00 O
ATOM 232 CB GLN A 27 -13.122 15.507 11.294 1.00 0.00 C
ATOM 233 CG GLN A 27 -14.454 15.938 10.597 1.00 0.00 C
ATOM 234 CD GLN A 27 -14.514 17.287 9.871 1.00 0.00 C
ATOM 235 NE2 GLN A 27 -13.844 17.463 8.760 1.00 0.00 N
ATOM 236 OE1 GLN A 27 -15.199 18.204 10.297 1.00 0.00 O
ATOM 237 NT GLN A 27 -9.757 15.495 10.910 1.00 0.00 N
ATOM 238 CAT GLN A 27 -8.508 15.315 11.628 1.00 0.00 C
CONECT 1 2 3 4
CONECT 2 1
CONECT 3 1
CONECT 4 1 5
CONECT 237 230 238
CONECT 238 237
END
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment