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JohnAtl/nipype_errors.txt

Last active March 29, 2022 11:59
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nipype_errors.txt
220329-07:08:30,215 nipype.workflow INFO:
Workflow preproc settings: ['check', 'execution', 'logging', 'monitoring']
220329-07:08:30,300 nipype.workflow INFO:
Running in parallel.
220329-07:08:30,304 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:08:32,307 nipype.workflow INFO:
[Job 0] Completed (preproc.selectfiles).
220329-07:08:32,311 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:08:34,310 nipype.workflow INFO:
[Job 1] Completed (preproc.selectfiles).
220329-07:08:34,312 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 12 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:08:36,310 nipype.workflow INFO:
[Job 2] Completed (preproc.selectfiles).
220329-07:08:36,311 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 13 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:08:38,310 nipype.workflow INFO:
[Job 3] Completed (preproc.selectfiles).
220329-07:08:38,312 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:08:40,310 nipype.workflow INFO:
[Job 4] Completed (preproc.selectfiles).
220329-07:08:40,312 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:08:42,310 nipype.workflow INFO:
[Job 5] Completed (preproc.selectfiles).
220329-07:08:42,312 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:08:44,310 nipype.workflow INFO:
[Job 6] Completed (preproc.selectfiles).
220329-07:08:44,312 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:08:46,311 nipype.workflow INFO:
[Job 7] Completed (preproc.selectfiles).
220329-07:08:46,313 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 18 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:08:48,314 nipype.workflow INFO:
[Job 8] Completed (preproc.selectfiles).
220329-07:08:48,316 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:08:50,318 nipype.workflow INFO:
[Job 9] Completed (preproc.selectfiles).
220329-07:08:50,320 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 20 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:08:50,421 nipype.workflow INFO:
[Job 10] Cached (preproc.extract).
220329-07:08:52,422 nipype.workflow INFO:
[Job 11] Cached (preproc.coregwf.bet_anat).
220329-07:08:54,420 nipype.workflow INFO:
[Job 12] Cached (preproc.extract).
220329-07:08:56,419 nipype.workflow INFO:
[Job 13] Cached (preproc.coregwf.bet_anat).
220329-07:08:58,426 nipype.workflow INFO:
[Job 14] Cached (preproc.extract).
220329-07:09:00,423 nipype.workflow INFO:
[Job 15] Cached (preproc.coregwf.bet_anat).
220329-07:09:02,434 nipype.workflow INFO:
[Job 16] Cached (preproc.extract).
220329-07:09:04,433 nipype.workflow INFO:
[Job 17] Cached (preproc.coregwf.bet_anat).
220329-07:09:06,423 nipype.workflow INFO:
[Job 18] Cached (preproc.extract).
220329-07:09:08,423 nipype.workflow INFO:
[Job 19] Cached (preproc.coregwf.bet_anat).
220329-07:09:10,424 nipype.workflow INFO:
[Job 20] Cached (preproc.extract).
220329-07:09:12,430 nipype.workflow INFO:
[Job 21] Cached (preproc.coregwf.bet_anat).
220329-07:09:14,436 nipype.workflow INFO:
[Job 22] Cached (preproc.extract).
220329-07:09:16,425 nipype.workflow INFO:
[Job 23] Cached (preproc.coregwf.bet_anat).
220329-07:09:18,425 nipype.workflow INFO:
[Job 24] Cached (preproc.extract).
220329-07:09:20,430 nipype.workflow INFO:
[Job 25] Cached (preproc.coregwf.bet_anat).
220329-07:09:22,427 nipype.workflow INFO:
[Job 26] Cached (preproc.extract).
220329-07:09:24,430 nipype.workflow INFO:
[Job 27] Cached (preproc.coregwf.bet_anat).
220329-07:09:26,438 nipype.workflow INFO:
[Job 28] Cached (preproc.extract).
220329-07:09:28,439 nipype.workflow INFO:
[Job 29] Cached (preproc.coregwf.bet_anat).
220329-07:09:32,337 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 19 jobs ready. Free memory (GB): 28.60/28.80, Free processors: 0/1.
Currently running:
* preproc.mcflirt
220329-07:10:20,370 nipype.workflow ERROR:
Node mcflirt.b0 failed to run on host Johns-iMac-Pro.local.
220329-07:10:20,371 nipype.workflow ERROR:
Saving crash info to /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-071020-john-mcflirt.b0-14e26bcd-f616-46d9-919a-6efb1027e35d.pklz
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node mcflirt.
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'mean_img' trait of a MCFLIRTOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/mcflirt/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' <class 'str'> was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/mcflirt/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' for output 'mean_img' of a MCFLIRT interface
220329-07:10:20,374 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:10:20,479 nipype.workflow INFO:
[Job 31] Cached (preproc.coregwf.segmentation).
220329-07:10:24,371 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 28.60/28.80, Free processors: 0/1.
Currently running:
* preproc.mcflirt
220329-07:11:08,417 nipype.workflow ERROR:
Node mcflirt.b1 failed to run on host Johns-iMac-Pro.local.
220329-07:11:08,418 nipype.workflow ERROR:
Saving crash info to /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-071108-john-mcflirt.b1-f8962308-6341-4df6-bf27-5fa307f6e137.pklz
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node mcflirt.
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'mean_img' trait of a MCFLIRTOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/mcflirt/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' <class 'str'> was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/mcflirt/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' for output 'mean_img' of a MCFLIRT interface
220329-07:11:08,420 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 18 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:11:08,523 nipype.workflow INFO:
[Job 33] Cached (preproc.coregwf.segmentation).
220329-07:11:12,422 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 28.60/28.80, Free processors: 0/1.
Currently running:
* preproc.mcflirt
220329-07:11:58,450 nipype.workflow ERROR:
Node mcflirt.b2 failed to run on host Johns-iMac-Pro.local.
220329-07:11:58,451 nipype.workflow ERROR:
Saving crash info to /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-071158-john-mcflirt.b2-4886b124-e338-4cad-a1a2-ad9e4d4b0fff.pklz
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node mcflirt.
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'mean_img' trait of a MCFLIRTOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/mcflirt/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' <class 'str'> was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/mcflirt/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' for output 'mean_img' of a MCFLIRT interface
220329-07:11:58,454 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:12:00,453 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 24.80/28.80, Free processors: 0/1.
Currently running:
* preproc.coregwf.segmentation
220329-07:14:28,505 nipype.workflow INFO:
[Job 35] Completed (preproc.coregwf.segmentation).
220329-07:14:28,508 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:14:30,506 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 28.60/28.80, Free processors: 0/1.
Currently running:
* preproc.mcflirt
220329-07:15:14,533 nipype.workflow ERROR:
Node mcflirt.b3 failed to run on host Johns-iMac-Pro.local.
220329-07:15:14,535 nipype.workflow ERROR:
Saving crash info to /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-071514-john-mcflirt.b3-928488cd-2640-4173-bc97-f0ee7ba93b35.pklz
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node mcflirt.
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'mean_img' trait of a MCFLIRTOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' <class 'str'> was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' for output 'mean_img' of a MCFLIRT interface
220329-07:15:14,538 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:15:16,534 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 15 jobs ready. Free memory (GB): 24.80/28.80, Free processors: 0/1.
Currently running:
* preproc.coregwf.segmentation
220329-07:17:30,680 nipype.workflow INFO:
[Job 37] Completed (preproc.coregwf.segmentation).
220329-07:17:30,682 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:17:32,681 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 15 jobs ready. Free memory (GB): 28.60/28.80, Free processors: 0/1.
Currently running:
* preproc.mcflirt
220329-07:18:20,742 nipype.workflow ERROR:
Node mcflirt.b4 failed to run on host Johns-iMac-Pro.local.
220329-07:18:20,743 nipype.workflow ERROR:
Saving crash info to /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-071820-john-mcflirt.b4-fe0f7c2c-5894-44d7-a022-62f3edd5a624.pklz
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node mcflirt.
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'mean_img' trait of a MCFLIRTOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' <class 'str'> was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' for output 'mean_img' of a MCFLIRT interface
220329-07:18:20,746 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:18:22,745 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 14 jobs ready. Free memory (GB): 24.80/28.80, Free processors: 0/1.
Currently running:
* preproc.coregwf.segmentation
220329-07:20:44,874 nipype.workflow INFO:
[Job 39] Completed (preproc.coregwf.segmentation).
220329-07:20:44,876 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:20:46,881 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 14 jobs ready. Free memory (GB): 28.60/28.80, Free processors: 0/1.
Currently running:
* preproc.mcflirt
220329-07:21:32,924 nipype.workflow ERROR:
Node mcflirt.b5 failed to run on host Johns-iMac-Pro.local.
220329-07:21:32,926 nipype.workflow ERROR:
Saving crash info to /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-072132-john-mcflirt.b5-60582726-a4db-4188-bfd1-1f7e6b94290a.pklz
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node mcflirt.
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'mean_img' trait of a MCFLIRTOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' <class 'str'> was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' for output 'mean_img' of a MCFLIRT interface
220329-07:21:32,929 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:21:34,924 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 13 jobs ready. Free memory (GB): 24.80/28.80, Free processors: 0/1.
Currently running:
* preproc.coregwf.segmentation
220329-07:23:39,154 nipype.workflow INFO:
[Job 41] Completed (preproc.coregwf.segmentation).
220329-07:23:39,155 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:23:41,154 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 13 jobs ready. Free memory (GB): 28.60/28.80, Free processors: 0/1.
Currently running:
* preproc.mcflirt
220329-07:24:25,173 nipype.workflow ERROR:
Node mcflirt.b6 failed to run on host Johns-iMac-Pro.local.
220329-07:24:25,174 nipype.workflow ERROR:
Saving crash info to /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-072425-john-mcflirt.b6-6ac17bce-ab3b-415e-a6f9-94abed3f29c3.pklz
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node mcflirt.
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'mean_img' trait of a MCFLIRTOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' <class 'str'> was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' for output 'mean_img' of a MCFLIRT interface
220329-07:24:25,176 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 13 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:24:27,173 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 12 jobs ready. Free memory (GB): 24.80/28.80, Free processors: 0/1.
Currently running:
* preproc.coregwf.segmentation
220329-07:26:33,258 nipype.workflow INFO:
[Job 43] Completed (preproc.coregwf.segmentation).
220329-07:26:33,260 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 13 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:26:35,259 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 12 jobs ready. Free memory (GB): 28.60/28.80, Free processors: 0/1.
Currently running:
* preproc.mcflirt
220329-07:27:21,316 nipype.workflow ERROR:
Node mcflirt.b7 failed to run on host Johns-iMac-Pro.local.
220329-07:27:21,317 nipype.workflow ERROR:
Saving crash info to /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-072721-john-mcflirt.b7-59f79549-e045-44ac-876d-5d95afecf67e.pklz
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node mcflirt.
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'mean_img' trait of a MCFLIRTOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' <class 'str'> was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' for output 'mean_img' of a MCFLIRT interface
220329-07:27:21,321 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 12 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:27:23,320 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 11 jobs ready. Free memory (GB): 24.80/28.80, Free processors: 0/1.
Currently running:
* preproc.coregwf.segmentation
220329-07:29:37,418 nipype.workflow INFO:
[Job 45] Completed (preproc.coregwf.segmentation).
220329-07:29:37,420 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 12 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:29:39,421 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 11 jobs ready. Free memory (GB): 28.60/28.80, Free processors: 0/1.
Currently running:
* preproc.mcflirt
220329-07:30:25,447 nipype.workflow ERROR:
Node mcflirt.b8 failed to run on host Johns-iMac-Pro.local.
220329-07:30:25,449 nipype.workflow ERROR:
Saving crash info to /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-073025-john-mcflirt.b8-ccdd7c47-0867-4734-964a-468a7143d0f4.pklz
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node mcflirt.
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'mean_img' trait of a MCFLIRTOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' <class 'str'> was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' for output 'mean_img' of a MCFLIRT interface
220329-07:30:25,452 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:30:27,447 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 24.80/28.80, Free processors: 0/1.
Currently running:
* preproc.coregwf.segmentation
220329-07:32:37,642 nipype.workflow INFO:
[Job 47] Completed (preproc.coregwf.segmentation).
220329-07:32:37,644 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:32:39,643 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 28.60/28.80, Free processors: 0/1.
Currently running:
* preproc.mcflirt
220329-07:33:21,685 nipype.workflow ERROR:
Node mcflirt.b9 failed to run on host Johns-iMac-Pro.local.
220329-07:33:21,686 nipype.workflow ERROR:
Saving crash info to /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-073321-john-mcflirt.b9-03ff8ce1-615c-4940-ad2b-e714adf64e25.pklz
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node mcflirt.
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'mean_img' trait of a MCFLIRTOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' <class 'str'> was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/Caskroom/miniconda/base/envs/nipype/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/Volumes/Data/Research/fmri/nipype_tutorial/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_mean_reg.nii' for output 'mean_img' of a MCFLIRT interface
220329-07:33:21,689 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:33:23,685 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 24.80/28.80, Free processors: 0/1.
Currently running:
* preproc.coregwf.segmentation
220329-07:35:23,847 nipype.workflow INFO:
[Job 49] Completed (preproc.coregwf.segmentation).
220329-07:35:23,849 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:35:25,848 nipype.workflow INFO:
[Job 52] Completed (preproc.coregwf.threshold).
220329-07:35:25,850 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 9 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:35:27,848 nipype.workflow INFO:
[Job 55] Completed (preproc.coregwf.threshold).
220329-07:35:27,850 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 8 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:35:29,853 nipype.workflow INFO:
[Job 58] Completed (preproc.coregwf.threshold).
220329-07:35:29,855 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 7 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:35:31,854 nipype.workflow INFO:
[Job 61] Completed (preproc.coregwf.threshold).
220329-07:35:31,856 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:35:33,853 nipype.workflow INFO:
[Job 64] Completed (preproc.coregwf.threshold).
220329-07:35:33,855 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:35:35,863 nipype.workflow INFO:
[Job 67] Completed (preproc.coregwf.threshold).
220329-07:35:35,866 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:35:37,872 nipype.workflow INFO:
[Job 70] Completed (preproc.coregwf.threshold).
220329-07:35:37,874 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:35:39,877 nipype.workflow INFO:
[Job 73] Completed (preproc.coregwf.threshold).
220329-07:35:39,880 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:35:41,886 nipype.workflow INFO:
[Job 76] Completed (preproc.coregwf.threshold).
220329-07:35:41,889 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:35:43,893 nipype.workflow INFO:
[Job 79] Completed (preproc.coregwf.threshold).
220329-07:35:43,895 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 28.80/28.80, Free processors: 1/1.
220329-07:35:45,892 nipype.workflow INFO:
***********************************
220329-07:35:45,893 nipype.workflow ERROR:
could not run node: preproc.mcflirt.b0
220329-07:35:45,894 nipype.workflow INFO:
crashfile: /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-071020-john-mcflirt.b0-14e26bcd-f616-46d9-919a-6efb1027e35d.pklz
220329-07:35:45,894 nipype.workflow ERROR:
could not run node: preproc.mcflirt.b1
220329-07:35:45,895 nipype.workflow INFO:
crashfile: /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-071108-john-mcflirt.b1-f8962308-6341-4df6-bf27-5fa307f6e137.pklz
220329-07:35:45,895 nipype.workflow ERROR:
could not run node: preproc.mcflirt.b2
220329-07:35:45,896 nipype.workflow INFO:
crashfile: /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-071158-john-mcflirt.b2-4886b124-e338-4cad-a1a2-ad9e4d4b0fff.pklz
220329-07:35:45,896 nipype.workflow ERROR:
could not run node: preproc.mcflirt.b3
220329-07:35:45,897 nipype.workflow INFO:
crashfile: /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-071514-john-mcflirt.b3-928488cd-2640-4173-bc97-f0ee7ba93b35.pklz
220329-07:35:45,897 nipype.workflow ERROR:
could not run node: preproc.mcflirt.b4
220329-07:35:45,898 nipype.workflow INFO:
crashfile: /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-071820-john-mcflirt.b4-fe0f7c2c-5894-44d7-a022-62f3edd5a624.pklz
220329-07:35:45,898 nipype.workflow ERROR:
could not run node: preproc.mcflirt.b5
220329-07:35:45,898 nipype.workflow INFO:
crashfile: /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-072132-john-mcflirt.b5-60582726-a4db-4188-bfd1-1f7e6b94290a.pklz
220329-07:35:45,899 nipype.workflow ERROR:
could not run node: preproc.mcflirt.b6
220329-07:35:45,899 nipype.workflow INFO:
crashfile: /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-072425-john-mcflirt.b6-6ac17bce-ab3b-415e-a6f9-94abed3f29c3.pklz
220329-07:35:45,899 nipype.workflow ERROR:
could not run node: preproc.mcflirt.b7
220329-07:35:45,900 nipype.workflow INFO:
crashfile: /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-072721-john-mcflirt.b7-59f79549-e045-44ac-876d-5d95afecf67e.pklz
220329-07:35:45,900 nipype.workflow ERROR:
could not run node: preproc.mcflirt.b8
220329-07:35:45,901 nipype.workflow INFO:
crashfile: /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-073025-john-mcflirt.b8-ccdd7c47-0867-4734-964a-468a7143d0f4.pklz
220329-07:35:45,901 nipype.workflow ERROR:
could not run node: preproc.mcflirt.b9
220329-07:35:45,901 nipype.workflow INFO:
crashfile: /Volumes/Data/Research/fmri/nipype_tutorial/notebooks/crash-20220329-073321-john-mcflirt.b9-03ff8ce1-615c-4940-ad2b-e714adf64e25.pklz
220329-07:35:45,902 nipype.workflow INFO:
***********************************
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