plot_anat_errors.txt

---------------------------------------------------------------------------
KeyError                                  Traceback (most recent call last)
Input In [221], in <cell line: 6>()
      4 display = plot_anat(mni_img, figure=fig, display_mode='z', cut_coords=z_coords)
      5 display.add_markers(coords, figure=fig)
----> 6 display.savefig(f'/output/2ndLevel/{cont_name}/task-ao/cluster_z_slices.png')

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/nilearn/plotting/displays/_slicers.py:709, in BaseSlicer.savefig(self, filename, dpi)
    696 """Save the figure to a file.
    697 
    698 Parameters
   (...)
    706     Default=None.
    707 """
    708 facecolor = edgecolor = 'k' if self._black_bg else 'w'
--> 709 self.frame_axes.figure.savefig(filename, dpi=dpi,
    710                                facecolor=facecolor,
    711                                edgecolor=edgecolor)

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/figure.py:3019, in Figure.savefig(self, fname, transparent, **kwargs)
   3015     for ax in self.axes:
   3016         stack.enter_context(
   3017             ax.patch._cm_set(facecolor='none', edgecolor='none'))
-> 3019 self.canvas.print_figure(fname, **kwargs)

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/backend_bases.py:2319, in FigureCanvasBase.print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, bbox_inches, pad_inches, bbox_extra_artists, backend, **kwargs)
   2315 try:
   2316     # _get_renderer may change the figure dpi (as vector formats
   2317     # force the figure dpi to 72), so we need to set it again here.
   2318     with cbook._setattr_cm(self.figure, dpi=dpi):
-> 2319         result = print_method(
   2320             filename,
   2321             facecolor=facecolor,
   2322             edgecolor=edgecolor,
   2323             orientation=orientation,
   2324             bbox_inches_restore=_bbox_inches_restore,
   2325             **kwargs)
   2326 finally:
   2327     if bbox_inches and restore_bbox:

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/backend_bases.py:1648, in _check_savefig_extra_args.<locals>.wrapper(*args, **kwargs)
   1640     _api.warn_deprecated(
   1641         '3.3', name=name, removal='3.6',
   1642         message='%(name)s() got unexpected keyword argument "'
   1643                 + arg + '" which is no longer supported as of '
   1644                 '%(since)s and will become an error '
   1645                 '%(removal)s')
   1646     kwargs.pop(arg)
-> 1648 return func(*args, **kwargs)

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/_api/deprecation.py:412, in delete_parameter.<locals>.wrapper(*inner_args, **inner_kwargs)
    402     deprecation_addendum = (
    403         f"If any parameter follows {name!r}, they should be passed as "
    404         f"keyword, not positionally.")
    405     warn_deprecated(
    406         since,
    407         name=repr(name),
   (...)
    410                  else deprecation_addendum,
    411         **kwargs)
--> 412 return func(*inner_args, **inner_kwargs)

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/backends/backend_agg.py:540, in FigureCanvasAgg.print_png(self, filename_or_obj, metadata, pil_kwargs, *args)
    490 @_check_savefig_extra_args
    491 @_api.delete_parameter("3.5", "args")
    492 def print_png(self, filename_or_obj, *args,
    493               metadata=None, pil_kwargs=None):
    494     """
    495     Write the figure to a PNG file.
    496 
   (...)
    538         *metadata*, including the default 'Software' key.
    539     """
--> 540     FigureCanvasAgg.draw(self)
    541     mpl.image.imsave(
    542         filename_or_obj, self.buffer_rgba(), format="png", origin="upper",
    543         dpi=self.figure.dpi, metadata=metadata, pil_kwargs=pil_kwargs)

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/backends/backend_agg.py:436, in FigureCanvasAgg.draw(self)
    432 # Acquire a lock on the shared font cache.
    433 with RendererAgg.lock, \
    434      (self.toolbar._wait_cursor_for_draw_cm() if self.toolbar
    435       else nullcontext()):
--> 436     self.figure.draw(self.renderer)
    437     # A GUI class may be need to update a window using this draw, so
    438     # don't forget to call the superclass.
    439     super().draw()

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/artist.py:73, in _finalize_rasterization.<locals>.draw_wrapper(artist, renderer, *args, **kwargs)
     71 @wraps(draw)
     72 def draw_wrapper(artist, renderer, *args, **kwargs):
---> 73     result = draw(artist, renderer, *args, **kwargs)
     74     if renderer._rasterizing:
     75         renderer.stop_rasterizing()

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/artist.py:50, in allow_rasterization.<locals>.draw_wrapper(artist, renderer)
     47     if artist.get_agg_filter() is not None:
     48         renderer.start_filter()
---> 50     return draw(artist, renderer)
     51 finally:
     52     if artist.get_agg_filter() is not None:

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/figure.py:2796, in Figure.draw(self, renderer)
   2793 if not self.get_visible():
   2794     return
-> 2796 artists = self._get_draw_artists(renderer)
   2798 try:
   2799     renderer.open_group('figure', gid=self.get_gid())

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/figure.py:235, in FigureBase._get_draw_artists(self, renderer)
    233 locator = ax.get_axes_locator()
    234 if locator:
--> 235     pos = locator(ax, renderer)
    236     ax.apply_aspect(pos)
    237 else:

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/nilearn/plotting/displays/_slicers.py:1386, in BaseStackedSlicer._locator(self, axes, renderer)
   1384     this_width = width_dict[display_ax.ax]
   1385     left += this_width
-> 1386 return Bbox([[left_dict[axes], y0],
   1387              [left_dict[axes] + width_dict[axes], y1]])

KeyError: <Axes:>

---------------------------------------------------------------------------
KeyError                                  Traceback (most recent call last)
File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/IPython/core/formatters.py:339, in BaseFormatter.__call__(self, obj)
    337     pass
    338 else:
--> 339     return printer(obj)
    340 # Finally look for special method names
    341 method = get_real_method(obj, self.print_method)

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/IPython/core/pylabtools.py:151, in print_figure(fig, fmt, bbox_inches, base64, **kwargs)
    148     from matplotlib.backend_bases import FigureCanvasBase
    149     FigureCanvasBase(fig)
--> 151 fig.canvas.print_figure(bytes_io, **kw)
    152 data = bytes_io.getvalue()
    153 if fmt == 'svg':

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/backend_bases.py:2295, in FigureCanvasBase.print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, bbox_inches, pad_inches, bbox_extra_artists, backend, **kwargs)
   2289     renderer = _get_renderer(
   2290         self.figure,
   2291         functools.partial(
   2292             print_method, orientation=orientation)
   2293     )
   2294     with getattr(renderer, "_draw_disabled", nullcontext)():
-> 2295         self.figure.draw(renderer)
   2297 if bbox_inches:
   2298     if bbox_inches == "tight":

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/artist.py:73, in _finalize_rasterization.<locals>.draw_wrapper(artist, renderer, *args, **kwargs)
     71 @wraps(draw)
     72 def draw_wrapper(artist, renderer, *args, **kwargs):
---> 73     result = draw(artist, renderer, *args, **kwargs)
     74     if renderer._rasterizing:
     75         renderer.stop_rasterizing()

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/artist.py:50, in allow_rasterization.<locals>.draw_wrapper(artist, renderer)
     47     if artist.get_agg_filter() is not None:
     48         renderer.start_filter()
---> 50     return draw(artist, renderer)
     51 finally:
     52     if artist.get_agg_filter() is not None:

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/figure.py:2796, in Figure.draw(self, renderer)
   2793 if not self.get_visible():
   2794     return
-> 2796 artists = self._get_draw_artists(renderer)
   2798 try:
   2799     renderer.open_group('figure', gid=self.get_gid())

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/matplotlib/figure.py:235, in FigureBase._get_draw_artists(self, renderer)
    233 locator = ax.get_axes_locator()
    234 if locator:
--> 235     pos = locator(ax, renderer)
    236     ax.apply_aspect(pos)
    237 else:

File /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages/nilearn/plotting/displays/_slicers.py:1386, in BaseStackedSlicer._locator(self, axes, renderer)
   1384     this_width = width_dict[display_ax.ax]
   1385     left += this_width
-> 1386 return Bbox([[left_dict[axes], y0],
   1387              [left_dict[axes] + width_dict[axes], y1]])

KeyError: <Axes:>

<Figure size 4800x3600 with 5 Axes>