create plots

gistfile1.sh

#!/bin/bash


for directory in `ls -d */`
do
	cd $directory
	echo now $directory
	echo "First part"
	for model in `ls | grep .xvg | grep -v -P "\.eps$" | grep -v rama|grep -v pressure|grep -v temperature | grep -v potential|grep -v totalEnergy`
	do
		MODELNAME=${model%%.[^.]*}
		MODELNAME=${model}
		echo "Processing model : "$MODELNAME
		xmgrace -hardcopy -printfile $MODELNAME.eps -nxy $MODELNAME
	done
	echo "Second part"
	for model in `ls  | grep -v -P "\.eps$"| grep .xvg | grep rama`
		do
			MODELNAME=${model%.[^.]*}
			        MODELNAME=${model}
			echo "Processing model : "$MODELNAME
			xmgrace -hardcopy -printfile $MODELNAME.eps $MODELNAME
		done
		echo "Third part"
	for model in `ls | grep .xvg | grep -v -P "\.eps$"|  grep -P "pressure|temperature|potential|totalEnergy"`
		do
			MODELNAME=${model%.[^.]*}
			        MODELNAME=${model}
			echo "Processing model : "$MODELNAME
			xmgrace -hardcopy -printfile $MODELNAME.eps -nxy $MODELNAME -pexec "RUNAVG(S0,100)"
		done
	

	cd ..
done