Josh Gutman JoshGutman

## pattern_finding.py
"""Finds and searches for patterns of nucleotides given loci.

Given a file containing loci, a file containing nucleotide calls of those loci,
a database to search in, and optionally an ignore threshold, this program
will calculate all possible patterns of nucleotides and search for their
occurrences in the database.

"""
import itertools
import argparse

## repeat_formatter.go
package main

import (
	"bufio"
	"fmt"
	"log"
	"os"
	"strings"
)

## sam_filter.go
package main

import (
	"bufio"
	"fmt"
	"log"
	"os"
	"sort"
	"strconv"
	"strings"
	"""Finds and searches for patterns of nucleotides given loci.

	Given a file containing loci, a file containing nucleotide calls of those loci,
	a database to search in, and optionally an ignore threshold, this program
	will calculate all possible patterns of nucleotides and search for their
	occurrences in the database.

	"""
	import itertools
	import argparse
	package main

	import (
	"bufio"
	"fmt"
	"log"
	"os"
	"sort"
	"strconv"
	"strings"