Juanmaria-rr

Approach 1. Assign phased from one position until next.

import pandas as pd
import numpy as np

def assign_phase_untilNext(df):
    df = df.sort_values(["CHROM", "POS"]).reset_index(drop=True)

    # Keep only phased SNPs as anchors
    phased_mask = df["GT"].isin(["0|1", "1|0"])

Juanmaria-rr

### load datasets

target_path = "gs://open-targets-data-releases/24.03/output/etl/parquet/targets/"
target = spark.read.parquet(target_path)
go = spark.read.parquet("gs://open-targets-data-releases/24.03/output/etl/parquet/go")
diseases_all = spark.read.parquet(
    "gs://open-targets-data-releases/24.03/output/etl/parquet/diseases/"
)

#### Target Facets