Manipulating conda

conda

# To save the current env 
conda env export > environment.yaml  

#conda configuration 
conda config --show channels # to view your configuration's current state,
conda config --show-sources # to view config file locations.

 # To test locally a new/modified package: 
 conda create -n bioconda bioconda-utils 
 conda activate bioconda
 bioconda-utils build recipes/ config.yml --packages the_package_name
 #or
 bioconda-utils build --docker --mulled-test --packages the_package_name
 
 # ==== About test ====
 # Test executed in the bioconda env (second part in the CI wrokflow) only the run_test.sh is used if exists (test in the meta.yaml file will be skipped).
 # When testing in the container (second part in the CI wrokflow) the run_test.sh file is not taken into account, only the test in
 # the meta.yaml file is executed