Upload UK Core to HAPI FHIR hack script - run twice.

uploadfhir.sh

#!/bin/bash

# Define variables
ZIP_FILE="hl7fhirukcorer4.zip"
FHIR_SERVER_URL="http://localhost:8080/fhir"

# Create a temporary directory to extract the zip file
TEMP_DIR=$(mktemp -d)

# Unzip the file
unzip "$ZIP_FILE" -d "$TEMP_DIR"

# Find all JSON files and upload them to the FHIR server
find "$TEMP_DIR" -type f -name "*.json" | while read -r json_file; do
    echo "Processing $json_file"
    
    # Extract the resource type and id from the JSON file
    RESOURCE_TYPE=$(jq -r .resourceType "$json_file")
    RESOURCE_ID=$(jq -r .id "$json_file")
    
    if [ -z "$RESOURCE_TYPE" ] || [ "$RESOURCE_TYPE" == "null" ]; then
        echo "Resource type not found in $json_file, skipping..."
        continue
    fi

    if [ -z "$RESOURCE_ID" ] || [ "$RESOURCE_ID" == "null" ]; then
        echo "Resource ID not found in $json_file, skipping..."
        continue
    fi
    
    # Construct the URL using the resource type and id
    URL="${FHIR_SERVER_URL}/${RESOURCE_TYPE}/${RESOURCE_ID}"
    
    echo "Uploading $json_file to $URL"
    curl -X PUT -H "Content-Type: application/json" --data @"$json_file" "$URL"
done

# Clean up the temporary directory
rm -rf "$TEMP_DIR"

echo "All JSON files have been processed and uploaded to the FHIR server."