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KnowledgeGarden/gist:6d92bc5d5ebfd1cc0e843415f1efa3c7

Created October 17, 2023 22:44
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gistfile1.txt
{
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{
"chainId": "CHAIN35",
"cargo": [
{
"chain": "S. cerevisiae var.",
"sentence": "1"
},
{
"chain": "S. cerevisiae var.",
"sentence": "3"
},
{
"chain": "S. cerevisiae var.",
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}
]
}
],
"mentions": [
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"3",
"2.5",
"10.5",
"The oval to round cell shape of S. cerevisiae var. boulardii",
"S. cerevisiae var.",
"approx. 3 µm thickness and 2.5 – 10.5 µm length",
"approx. 3 µm thickness",
"2.5 – 10.5 µm length"
],
[
"8",
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[
"1,3 - β - glucan",
"The cell wall of S. cerevisiae var. boulardii",
"S. cerevisiae var.",
"a rigid inner polysaccharide layer with a 1,3 - β - glucan branched structure",
"a 1,3 - β - glucan branched structure",
"the outer layer",
"mannoproteins"
],
[
"The total mass of S. cerevisiae var. boulardii in terms of dry weight",
"S. cerevisiae var. boulardii in terms of dry weight",
"terms of dry weight",
"the estimated total polysaccharide",
"protein contents"
],
[
"S. cerevisiae var. boulardii",
"the presence of glucose , mannose and N - acetylglucosamine up to 90 % , 20 % and 2 %",
"glucose , mannose and N - acetylglucosamine"
],
[
"Glucose to glucose interaction",
"glucose interaction",
"β - 1,3 and β - 1,6 linkages"
],
[
"β - 1,3 glucan",
"the elasticity and strength of the yeast cell wall",
"the yeast cell wall"
],
[
"1",
"9",
"The lateral cell wall of S. cerevisiae var. boulardii",
"S. cerevisiae var.",
"straight chitin chains of 1 – 2 % of total dry weight"
]
],
"sentences": [
{
"text": "The oval to round cell shape of S. cerevisiae var. boulardii is composed of approx. 3 µm thickness and 2.5–10.5 µm length.",
"spcy": {
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{
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{
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{
"strt": 8,
"txt": "cerevisiae"
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{
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{
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{
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}
],
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{
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"txt": "composed"
}
],
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"txt": "and"
}
],
"disj": [],
"noms": [
{
"strt": 5,
"txt": "shape of"
}
],
"suchs": [],
"scispcy": {
"sentence": "The oval to round cell shape of S. cerevisiae var. boulardii is composed of approx. 3 µm thickness and 2.5–10.5 µm length.",
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"tag": "DT",
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{
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{
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{
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{
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},
{
"txt": "cerevisiae",
"lemma": "cerevisiae",
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{
"txt": "var",
"lemma": "var",
"pos": "NOUN",
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"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
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{
"txt": "boulardii",
"lemma": "boulardii",
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"tag": "NN",
"dep": "nsubjpass"
},
{
"txt": "is",
"lemma": "be",
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"tag": "VBZ",
"dep": "auxpass"
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{
"txt": "composed",
"lemma": "compose",
"pos": "VERB",
"tag": "VBN",
"dep": "ROOT"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
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"dep": "case"
},
{
"txt": "approx",
"lemma": "approx",
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"tag": "RB",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
},
{
"txt": "3",
"lemma": "3",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "µm",
"lemma": "µm",
"pos": "NOUN",
"tag": "NN",
"dep": "dep"
},
{
"txt": "thickness",
"lemma": "thickness",
"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "2.5–10.5",
"lemma": "2.5–10.5",
"pos": "NUM",
"tag": "CD",
"dep": "conj"
},
{
"txt": "µm",
"lemma": "µm",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "length",
"lemma": "length",
"pos": "NOUN",
"tag": "NN",
"dep": "dep"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": [],
"dbp": [
{
"@URI": "http://dbpedia.org/resource/The_Oval",
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{
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"@offset": "32",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
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{
"@URI": "http://dbpedia.org/resource/Micrometre",
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{
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],
"ents": [
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"umls": []
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{
"name": "S. cerevisiae",
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"umls": []
},
{
"name": "µm",
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"umls": []
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{
"name": "µm",
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"umls": []
}
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},
"nouns": [
"The oval to round cell shape of S. cerevisiae var. boulardii",
"The oval",
"round cell shape of S. cerevisiae var. boulardii",
"S. cerevisiae",
"approx. 3 µm thickness and 2.5–10.5 µm length",
"approx. 3 µm thickness",
"2.5–10.5 µm length"
],
"verbs": [
"is composed of approx. 3 µm thickness and 2.5–10.5 µm length",
"composed of approx. 3 µm thickness and 2.5–10.5 µm length"
],
"relns": []
},
{
"text": "This yeast is able to reproduce sexually and asexually by budding and unification [8].",
"spcy": {
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{
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{
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{
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{
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"txt": "unification"
}
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{
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"txt": "reproduce"
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{
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"txt": "budding"
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{
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"txt": "and"
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{
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{
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{
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{
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{
"txt": "sexually",
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{
"txt": "and",
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{
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{
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{
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{
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{
"txt": "unification",
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},
{
"txt": "[",
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"dep": "punct"
},
{
"txt": "8",
"lemma": "8",
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"tag": "CD",
"dep": "nummod"
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{
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"dep": "punct"
},
{
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],
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[]
],
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{
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{
"@URI": "http://dbpedia.org/resource/Asexual_reproduction",
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],
"ents": [
{
"name": "yeast",
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{
"cid": "C0036025",
"canonical": "Saccharomyces cerevisiae",
"aliases": [
"Baker Yeast",
"Saccharomyces cerevisiae",
"Yeast, Brewer's",
"cerevisiae saccharomyces",
"Brewers Yeast",
"brewer's or baker's yeast",
"Baker's yeast",
"Saccharomyces italicus",
"S cerevisiae",
"S. italicus",
"Saccharomyces uvarum var. melibiosus",
"S. oviformis",
"Saccharomyces cerevisiae (substance)",
"Yeast brewer's",
"S. uvarum var. melibiosus",
"S. cerevisiae",
"brewer yeast",
"Baker's Yeast",
"brewer's yeast",
"Brewer's yeast",
"Baker's Yeasts",
"Candida robusta",
"Baker's yeast (Saccharomyces cerevisiae)",
"Brewers' yeast",
"brewers yeast",
"Yeast, Baker",
"Mycoderma cerevisiae",
"Brewer's Yeast",
"S. capensis",
"brewers' yeast",
"Yeast, Baker's",
"Saccharomyces cerevisae",
"baker's yeast",
"Saccharomyces capensis",
"saccharomyces cerevisiae",
"Saccharomyces Cerevisiae",
"Yeast bakers",
"yeast",
"Saccharomyces cerevisiae (organism)",
"Saccharomyces oviformis"
],
"types": [
"T004"
],
"definition": "A species of the genus SACCHAROMYCES, family Saccharomycetaceae, order Saccharomycetales, known as \"baker's\" or \"brewer's\" yeast. The dried form is used as a dietary supplement."
},
{
"cid": "C0043392",
"canonical": "Yeast, Dried",
"aliases": [
"Dried Yeast",
"Yeast, dried",
"Yeast",
"Yeast, Dried",
"Nutritional Yeast",
"nutritional yeast",
"Yeast, Nutritional"
],
"types": [
"T168"
],
"definition": "The dry cells of any suitable strain of SACCHAROMYCES CEREVISIAE or CANDIDA. It can be obtained as a by-product from the brewing of beer or by growing on media not suitable for beer production. Dried yeast serves as a source of protein and VITAMIN B COMPLEX."
},
{
"cid": "C0043393",
"canonical": "Yeasts",
"aliases": [
"Yeast",
"Yeast (substance)",
"YEAST",
"Yeast, NOS",
"Yeasts",
"Yeast (organism)",
"yeast"
],
"types": [
"T004"
],
"definition": "A general term for single-celled rounded fungi that reproduce by budding. Brewers' and bakers' yeasts are SACCHAROMYCES CEREVISIAE; therapeutic dried yeast is YEAST, DRIED."
},
{
"cid": "C0717551",
"canonical": "Candida albicans allergenic extract",
"aliases": [
"Yeast",
"Candida albicans diagnostic allergen extract (product)",
"Candida albicans allergenic extract",
"YEAST",
"candida albicans extract",
"Yeasts",
"Yeast, unspecified",
"Yeast, Unspecified",
"Candida albicans diagnostic allergen extract",
"ALLERGENIC EXTRACT, CANDIDA ALBICANS",
"Candida albicans extract",
"yeast allergenic extract",
"yeast, unspecified",
"YEAST, UNSPECIFIED",
"CANDIDA ALBICANS",
"Candida albicans",
"yeast"
],
"types": [
"T121",
"T129"
],
"definition": null
},
{
"cid": "C0997449",
"canonical": "Monascus purpureus",
"aliases": [
"red yeast",
"Monascus rubiginosus",
"RED YEAST",
"Monascus purpurea",
"Monascus albidus",
"Monascus anka",
"monascus purpureus",
"Monascus purpureus",
"Monascus araneosus"
],
"types": [
"T004"
],
"definition": "Species in the family Monascaceae. M. purpureus is grown on cooked non-glutinous rice, producing a fermentation by-product known as red yeast rice. Red yeast rice contains a compound related to the statins that has been shown to reduce cholesterol levels."
}
]
},
{
"name": "asexually",
"strt": 8,
"umls": [
{
"cid": "C0036864",
"canonical": "Sex Behavior",
"aliases": [
"Sexual behavior",
"Sexual behavior (observable entity)",
"sexual behavior",
"Sexual behaviour, NOS",
"sexual relations",
"sexual behaviors",
"Finding relating to sexual practice",
"sex behavior",
"Finding relating to sexual behavior (finding)",
"Finding relating to sexual behaviour",
"SEXUAL BEHAVIORS",
"Activity, Sexual",
"Sexual Activities",
"sexual activity",
"Sexual behavior, NOS",
"Sexual behaviour",
"Sexual",
"Finding relating to sexual behavior",
"Sexual States",
"Behavior, Sex",
"Sex",
"sexual activities",
"sexuality",
"Sexual Activity",
"Behavior, Sexual",
"Sexually",
"Activities, Sexual",
"Sexual Behavior",
"Sex Behavior",
"sexual behaviour"
],
"types": [
"T053"
],
"definition": "Sexual activities of humans."
},
{
"cid": "C4707386",
"canonical": "Sexually attracted to neither male nor female sex",
"aliases": [
"asexual",
"Sexually attracted to neither male nor female sex (finding)",
"Asexual",
"Sexually attracted to neither sex",
"Asexuality"
],
"types": [
"T033"
],
"definition": "Used to describe an individual who does not experience sexual attraction."
},
{
"cid": "C0241028",
"canonical": "Sexually active",
"aliases": [
"SEXUALLY ACTIVE",
"Sexually active (finding)",
"active sexually",
"sexually active",
"Sexually Active"
],
"types": [
"T033"
],
"definition": "A response indicating that an individual is or was sexually active."
},
{
"cid": "C4764184",
"canonical": "Sexually Mature",
"aliases": [],
"types": [
"T032"
],
"definition": "The life stage at which the organism is capable of reproduction."
},
{
"cid": "C4321500",
"canonical": "Not Sexually Active",
"aliases": [
"Not Sexually Active"
],
"types": [
"T033"
],
"definition": "A response indicating that an individual is not or was not sexually active."
}
]
}
]
}
},
"nouns": [
"This yeast",
"budding and unification",
"8"
],
"verbs": [
"is able to reproduce sexually and asexually by budding and unification [8]",
"to reproduce sexually and asexually by budding and unification",
"reproduce sexually and asexually by budding and unification",
"reproduce sexually",
"asexually by budding and unification"
],
"relns": []
},
{
"text": "The cell wall of S. cerevisiae var. boulardii is composed of a rigid inner polysaccharide layer with a 1,3-β-glucan branched structure while the outer layer is made up of mannoproteins.",
"spcy": {
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"txt": "is"
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{
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"txt": "is"
}
],
[
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},
{
"strt": 10,
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"txt": "composed of"
},
{
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}
]
],
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"txt": "cell"
},
{
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"txt": "wall"
},
{
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"txt": "cerevisiae"
},
{
"strt": 6,
"txt": "var"
},
{
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"txt": "layer"
},
{
"strt": 24,
"txt": "branched"
},
{
"strt": 25,
"txt": "structure"
},
{
"strt": 29,
"txt": "layer"
},
{
"strt": 34,
"txt": "mannoproteins"
}
],
"pnns": [
{
"strt": 4,
"txt": "S."
},
{
"strt": 8,
"txt": "boulardii"
},
{
"strt": 21,
"txt": "β"
}
],
"vrbs": [
{
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"txt": "composed"
},
{
"strt": 31,
"txt": "made"
}
],
"conj": [],
"disj": [],
"noms": [
{
"strt": 2,
"txt": "wall of"
}
],
"suchs": [],
"scispcy": {
"sentence": "The cell wall of S. cerevisiae var. boulardii is composed of a rigid inner polysaccharide layer with a 1,3-β-glucan branched structure while the outer layer is made up of mannoproteins.",
"pos": [
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"lemma": "the",
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"tag": "DT",
"dep": "det"
},
{
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},
{
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{
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{
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"dep": "compound"
},
{
"txt": "cerevisiae",
"lemma": "cerevisiae",
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"tag": "FW",
"dep": "compound"
},
{
"txt": "var",
"lemma": "var",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
},
{
"txt": "boulardii",
"lemma": "boulardii",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubjpass"
},
{
"txt": "is",
"lemma": "be",
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"T070"
],
"definition": "Resistance and recovery from distortion of shape."
},
{
"cid": "C1547021",
"canonical": "Kind of quantity - Elasticity",
"aliases": [
"Elasticity"
],
"types": [
"T081"
],
"definition": null
},
{
"cid": "C1831583",
"canonical": "Elasticity (tissue integrity)",
"aliases": [
"Organ Elasticity"
],
"types": [
"T201"
],
"definition": "A quantitative measurement of an organ's ability to deform in response to physiological force and return to its normal shape by passive elastic recoil."
},
{
"cid": "C5669868",
"canonical": "Vaginal Elasticity",
"aliases": [],
"types": [
"T170"
],
"definition": "A question about an individual's vaginal elasticity."
},
{
"cid": "C2350289",
"canonical": "Elastic Modulus",
"aliases": [
"Modulus, Young's",
"Modulus, Young",
"Young Modulus",
"Youngs Modulus",
"Modulus of Elasticity",
"Young's Modulus",
"Modulus, Elastic",
"Elasticity Modulus"
],
"types": [
"T081"
],
"definition": "Numerical expression indicating the measure of stiffness in a material. It is defined by the ratio of stress in a unit area of substance to the resulting deformation (strain). This allows the behavior of a material under load (such as bone) to be calculated."
}
]
},
{
"name": "yeast",
"strt": 11,
"umls": []
},
{
"name": "cell wall",
"strt": 12,
"umls": []
}
]
}
},
"nouns": [
"β-1,3 glucan",
"the elasticity and strength of the yeast cell wall",
"the elasticity and strength",
"the yeast cell wall"
],
"verbs": [
"is responsible for the elasticity and strength of the yeast cell wall"
],
"relns": []
},
{
"text": "The lateral cell wall of S. cerevisiae var. boulardii is composed of straight chitin chains of 1–2% of total dry weight [9].",
"spcy": {
"data": [
[
{
"strt": 10,
"enx": 11,
"txt": "is"
}
],
[
{
"strt": 10,
"enx": 11,
"txt": "is"
},
{
"strt": 11,
"enx": 13,
"txt": "composed of"
}
]
],
"wkd": [],
"nns": [
{
"strt": 2,
"txt": "cell"
},
{
"strt": 3,
"txt": "wall"
},
{
"strt": 6,
"txt": "cerevisiae"
},
{
"strt": 7,
"txt": "var"
},
{
"strt": 14,
"txt": "chitin"
},
{
"strt": 15,
"txt": "chains"
},
{
"strt": 18,
"txt": "%"
},
{
"strt": 22,
"txt": "weight"
}
],
"pnns": [
{
"strt": 5,
"txt": "S."
},
{
"strt": 9,
"txt": "boulardii"
}
],
"vrbs": [
{
"strt": 11,
"txt": "composed"
}
],
"conj": [],
"disj": [],
"noms": [
{
"strt": 3,
"txt": "wall of"
},
{
"strt": 15,
"txt": "chains of"
},
{
"strt": 18,
"txt": "% of"
}
],
"suchs": [],
"scispcy": {
"sentence": "The lateral cell wall of S. cerevisiae var. boulardii is composed of straight chitin chains of 1–2% of total dry weight [9].",
"pos": [
{
"txt": "The",
"lemma": "the",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "lateral",
"lemma": "lateral",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "cell",
"lemma": "cell",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "wall",
"lemma": "wall",
"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "S.",
"lemma": "s.",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "cerevisiae",
"lemma": "cerevisiae",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "var",
"lemma": "var",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
},
{
"txt": "boulardii",
"lemma": "boulardii",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubjpass"
},
{
"txt": "is",
"lemma": "be",
"pos": "AUX",
"tag": "VBZ",
"dep": "auxpass"
},
{
"txt": "composed",
"lemma": "compose",
"pos": "VERB",
"tag": "VBN",
"dep": "ROOT"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "straight",
"lemma": "straight",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "chitin",
"lemma": "chitin",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "chains",
"lemma": "chain",
"pos": "NOUN",
"tag": "NNS",
"dep": "nmod"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "1–2",
"lemma": "1–2",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "%",
"lemma": "%",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "total",
"lemma": "total",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "dry",
"lemma": "dry",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "weight",
"lemma": "weight",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": "[",
"lemma": "[",
"pos": "PUNCT",
"tag": "-LRB-",
"dep": "punct"
},
{
"txt": "9",
"lemma": "9",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "]",
"lemma": "]",
"pos": "PUNCT",
"tag": "-RRB-",
"dep": "punct"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": [],
"dbp": [
{
"@URI": "http://dbpedia.org/resource/Cell_wall",
"@support": "1421",
"@types": "",
"@surfaceForm": "cell wall",
"@offset": "12",
"@similarityScore": "0.9999998670072134",
"@percentageOfSecondRank": "1.107554702930186E-7"
},
{
"@URI": "http://dbpedia.org/resource/Saccharomyces_cerevisiae",
"@support": "1227",
"@types": "",
"@surfaceForm": "S. cerevisiae",
"@offset": "25",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Chitin",
"@support": "754",
"@types": "",
"@surfaceForm": "chitin",
"@offset": "78",
"@similarityScore": "0.9999999999994884",
"@percentageOfSecondRank": "0.0"
}
],
"ents": [
{
"name": "cell wall",
"strt": 2,
"umls": []
},
{
"name": "S. cerevisiae",
"strt": 5,
"umls": []
},
{
"name": "chitin",
"strt": 14,
"umls": []
}
]
}
},
"nouns": [
"The lateral cell wall of S. cerevisiae var. boulardii",
"The lateral cell wall",
"S. cerevisiae var. boulardii",
"straight chitin chains of 1–2% of total dry weight",
"straight chitin chains",
"1–2% of total dry weight",
"1–2%",
"total dry weight",
"9"
],
"verbs": [
"is composed of straight chitin chains of 1–2% of total dry weight [9]",
"composed of straight chitin chains of 1–2% of total dry weight [9]"
],
"relns": []
}
]
}
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