Skip to content

Instantly share code, notes, and snippets.

@KnowledgeGarden

KnowledgeGarden/gist:84c896d0e8746dd56e2ac033e9c8e71c

Created October 17, 2023 21:51
Show Gist options
  • Save KnowledgeGarden/84c896d0e8746dd56e2ac033e9c8e71c to your computer and use it in GitHub Desktop.
Save KnowledgeGarden/84c896d0e8746dd56e2ac033e9c8e71c to your computer and use it in GitHub Desktop.
Download ZIP
20231017 local from http
Raw
gistfile1.txt
{
"corefs": [
{
"chainId": "CHAIN35",
"cargo": [
{
"chain": "S. cerevisiae var.",
"sentence": "1"
},
{
"chain": "S. cerevisiae var.",
"sentence": "3"
},
{
"chain": "S. cerevisiae var.",
"sentence": "8"
}
]
}
],
"mentions": [
[
"3",
"2.5",
"10.5",
"The oval to round cell shape of S. cerevisiae var. boulardii",
"S. cerevisiae var.",
"approx. 3 µm thickness and 2.5 – 10.5 µm length",
"approx. 3 µm thickness",
"2.5 – 10.5 µm length"
],
[
"8",
"This yeast",
"budding and unification"
],
[
"1,3 - β - glucan",
"The cell wall of S. cerevisiae var. boulardii",
"S. cerevisiae var.",
"a rigid inner polysaccharide layer with a 1,3 - β - glucan branched structure",
"a 1,3 - β - glucan branched structure",
"the outer layer",
"mannoproteins"
],
[
"The total mass of S. cerevisiae var. boulardii in terms of dry weight",
"S. cerevisiae var. boulardii in terms of dry weight",
"terms of dry weight",
"the estimated total polysaccharide",
"protein contents"
],
[
"S. cerevisiae var. boulardii",
"the presence of glucose , mannose and N - acetylglucosamine up to 90 % , 20 % and 2 %",
"glucose , mannose and N - acetylglucosamine"
],
[
"Glucose to glucose interaction",
"glucose interaction",
"β - 1,3 and β - 1,6 linkages"
],
[
"β - 1,3 glucan",
"the elasticity and strength of the yeast cell wall",
"the yeast cell wall"
],
[
"1",
"9",
"The lateral cell wall of S. cerevisiae var. boulardii",
"S. cerevisiae var.",
"straight chitin chains of 1 – 2 % of total dry weight"
]
],
"sentences": [
{
"text": "The oval to round cell shape of S. cerevisiae var. boulardii is composed of approx. 3 µm thickness and 2.5–10.5 µm length.",
"spcy": {
"data": [
[
{
"strt": 12,
"enx": 13,
"txt": "is"
}
],
[
{
"strt": 12,
"enx": 13,
"txt": "is"
},
{
"strt": 13,
"enx": 15,
"txt": "composed of"
}
]
],
"wkd": [],
"nns": [
{
"strt": 1,
"txt": "oval"
},
{
"strt": 4,
"txt": "cell"
},
{
"strt": 5,
"txt": "shape"
},
{
"strt": 8,
"txt": "cerevisiae"
},
{
"strt": 9,
"txt": "var"
},
{
"strt": 18,
"txt": "µm"
},
{
"strt": 19,
"txt": "thickness"
},
{
"strt": 22,
"txt": "µm"
},
{
"strt": 23,
"txt": "length"
}
],
"pnns": [
{
"strt": 7,
"txt": "S."
},
{
"strt": 11,
"txt": "boulardii"
},
{
"strt": 15,
"txt": "approx"
}
],
"vrbs": [
{
"strt": 3,
"txt": "round"
},
{
"strt": 13,
"txt": "composed"
}
],
"conj": [
{
"strt": 20,
"txt": "and"
}
],
"disj": [],
"noms": [
{
"strt": 5,
"txt": "shape of"
}
],
"suchs": [],
"scispcy": {
"sentence": "The oval to round cell shape of S. cerevisiae var. boulardii is composed of approx. 3 µm thickness and 2.5–10.5 µm length.",
"pos": [
{
"txt": "The",
"lemma": "the",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "oval",
"lemma": "oval",
"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
},
{
"txt": "to",
"lemma": "to",
"pos": "PART",
"tag": "TO",
"dep": "mark"
},
{
"txt": "round",
"lemma": "round",
"pos": "VERB",
"tag": "VB",
"dep": "acl"
},
{
"txt": "cell",
"lemma": "cell",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "shape",
"lemma": "shape",
"pos": "NOUN",
"tag": "NN",
"dep": "dobj"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "S.",
"lemma": "s.",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "cerevisiae",
"lemma": "cerevisiae",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "var",
"lemma": "var",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
},
{
"txt": "boulardii",
"lemma": "boulardii",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubjpass"
},
{
"txt": "is",
"lemma": "be",
"pos": "AUX",
"tag": "VBZ",
"dep": "auxpass"
},
{
"txt": "composed",
"lemma": "compose",
"pos": "VERB",
"tag": "VBN",
"dep": "ROOT"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "approx",
"lemma": "approx",
"pos": "ADV",
"tag": "RB",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
},
{
"txt": "3",
"lemma": "3",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "µm",
"lemma": "µm",
"pos": "NOUN",
"tag": "NN",
"dep": "dep"
},
{
"txt": "thickness",
"lemma": "thickness",
"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "2.5–10.5",
"lemma": "2.5–10.5",
"pos": "NUM",
"tag": "CD",
"dep": "conj"
},
{
"txt": "µm",
"lemma": "µm",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "length",
"lemma": "length",
"pos": "NOUN",
"tag": "NN",
"dep": "dep"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
{
"@URI": "http://dbpedia.org/resource/The_Oval",
"@support": "2312",
"@types": "",
"@surfaceForm": "The oval",
"@offset": "0",
"@similarityScore": "0.9999389605115417",
"@percentageOfSecondRank": "5.158697776638797E-5"
},
{
"@URI": "http://dbpedia.org/resource/Saccharomyces_cerevisiae",
"@support": "1227",
"@types": "",
"@surfaceForm": "S. cerevisiae",
"@offset": "32",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Micrometre",
"@support": "5120",
"@types": "",
"@surfaceForm": "µm",
"@offset": "86",
"@similarityScore": "0.9999999294195188",
"@percentageOfSecondRank": "7.058020137171312E-8"
},
{
"@URI": "http://dbpedia.org/resource/Micrometre",
"@support": "5120",
"@types": "",
"@surfaceForm": "µm",
"@offset": "112",
"@similarityScore": "0.9999999294195188",
"@percentageOfSecondRank": "7.058020137171312E-8"
}
],
"ents": {
"name": "µm",
"strt": 22,
"umls": []
}
}
},
"nouns": [
"The oval to round cell shape of S. cerevisiae var. boulardii",
"The oval",
"round cell shape of S. cerevisiae var. boulardii",
"S. cerevisiae",
"approx. 3 µm thickness and 2.5–10.5 µm length",
"approx. 3 µm thickness",
"2.5–10.5 µm length"
],
"verbs": [
"is composed of approx. 3 µm thickness and 2.5–10.5 µm length",
"composed of approx. 3 µm thickness and 2.5–10.5 µm length"
],
"relns": []
},
{
"text": "This yeast is able to reproduce sexually and asexually by budding and unification [8].",
"spcy": {
"data": [
[
{
"strt": 2,
"enx": 3,
"txt": "is"
}
],
[
{
"strt": 2,
"enx": 3,
"txt": "is"
},
{
"strt": 3,
"enx": 5,
"txt": "able to"
}
]
],
"wkd": [],
"nns": [
{
"strt": 1,
"txt": "yeast"
},
{
"strt": 12,
"txt": "unification"
}
],
"pnns": [],
"vrbs": [
{
"strt": 5,
"txt": "reproduce"
},
{
"strt": 10,
"txt": "budding"
}
],
"conj": [
{
"strt": 7,
"txt": "and"
},
{
"strt": 11,
"txt": "and"
}
],
"disj": [],
"noms": [],
"suchs": [],
"scispcy": {
"sentence": "This yeast is able to reproduce sexually and asexually by budding and unification [8].",
"pos": [
{
"txt": "This",
"lemma": "this",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "yeast",
"lemma": "yeast",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubj"
},
{
"txt": "is",
"lemma": "be",
"pos": "AUX",
"tag": "VBZ",
"dep": "cop"
},
{
"txt": "able",
"lemma": "able",
"pos": "ADJ",
"tag": "JJ",
"dep": "ROOT"
},
{
"txt": "to",
"lemma": "to",
"pos": "PART",
"tag": "TO",
"dep": "mark"
},
{
"txt": "reproduce",
"lemma": "reproduce",
"pos": "VERB",
"tag": "VB",
"dep": "xcomp"
},
{
"txt": "sexually",
"lemma": "sexually",
"pos": "ADV",
"tag": "RB",
"dep": "advmod"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "asexually",
"lemma": "asexually",
"pos": "ADV",
"tag": "RB",
"dep": "advmod"
},
{
"txt": "by",
"lemma": "by",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "budding",
"lemma": "budding",
"pos": "ADJ",
"tag": "JJ",
"dep": "advcl"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "unification",
"lemma": "unification",
"pos": "NOUN",
"tag": "NN",
"dep": "conj"
},
{
"txt": "[",
"lemma": "[",
"pos": "PUNCT",
"tag": "-LRB-",
"dep": "punct"
},
{
"txt": "8",
"lemma": "8",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "]",
"lemma": "]",
"pos": "PUNCT",
"tag": "-RRB-",
"dep": "punct"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
{
"@URI": "http://dbpedia.org/resource/Yeast",
"@support": "4372",
"@types": "Wikidata:Q19088,DBpedia:Species,DBpedia:Eukaryote,DBpedia:Fungus",
"@surfaceForm": "yeast",
"@offset": "5",
"@similarityScore": "0.9964965321817804",
"@percentageOfSecondRank": "0.0034539362929468277"
},
{
"@URI": "http://dbpedia.org/resource/Asexual_reproduction",
"@support": "998",
"@types": "",
"@surfaceForm": "asexually",
"@offset": "45",
"@similarityScore": "0.999983030096195",
"@percentageOfSecondRank": "1.534322454398208E-5"
}
],
"ents": {
"name": "asexually",
"strt": 8,
"umls": [
{
"cid": "C0036864",
"canonical": "Sex Behavior",
"aliases": [
"Sexual behavior",
"Sexual behavior (observable entity)",
"sexual behavior",
"Sexual behaviour, NOS",
"sexual relations",
"sexual behaviors",
"Finding relating to sexual practice",
"sex behavior",
"Finding relating to sexual behavior (finding)",
"Finding relating to sexual behaviour",
"SEXUAL BEHAVIORS",
"Activity, Sexual",
"Sexual Activities",
"sexual activity",
"Sexual behavior, NOS",
"Sexual behaviour",
"Sexual",
"Finding relating to sexual behavior",
"Sexual States",
"Behavior, Sex",
"Sex",
"sexual activities",
"sexuality",
"Sexual Activity",
"Behavior, Sexual",
"Sexually",
"Activities, Sexual",
"Sexual Behavior",
"Sex Behavior",
"sexual behaviour"
],
"types": [
"T053"
],
"definition": "Sexual activities of humans."
},
{
"cid": "C4707386",
"canonical": "Sexually attracted to neither male nor female sex",
"aliases": [
"asexual",
"Sexually attracted to neither male nor female sex (finding)",
"Asexual",
"Sexually attracted to neither sex",
"Asexuality"
],
"types": [
"T033"
],
"definition": "Used to describe an individual who does not experience sexual attraction."
},
{
"cid": "C0241028",
"canonical": "Sexually active",
"aliases": [
"SEXUALLY ACTIVE",
"Sexually active (finding)",
"active sexually",
"sexually active",
"Sexually Active"
],
"types": [
"T033"
],
"definition": "A response indicating that an individual is or was sexually active."
},
{
"cid": "C4764184",
"canonical": "Sexually Mature",
"aliases": [],
"types": [
"T032"
],
"definition": "The life stage at which the organism is capable of reproduction."
},
{
"cid": "C4321500",
"canonical": "Not Sexually Active",
"aliases": [
"Not Sexually Active"
],
"types": [
"T033"
],
"definition": "A response indicating that an individual is not or was not sexually active."
}
]
}
}
},
"nouns": [
"This yeast",
"budding and unification",
"8"
],
"verbs": [
"is able to reproduce sexually and asexually by budding and unification [8]",
"to reproduce sexually and asexually by budding and unification",
"reproduce sexually and asexually by budding and unification",
"reproduce sexually",
"asexually by budding and unification"
],
"relns": []
},
{
"text": "The cell wall of S. cerevisiae var. boulardii is composed of a rigid inner polysaccharide layer with a 1,3-β-glucan branched structure while the outer layer is made up of mannoproteins.",
"spcy": {
"data": [
[
{
"strt": 9,
"enx": 10,
"txt": "is"
},
{
"strt": 30,
"enx": 31,
"txt": "is"
}
],
[
{
"strt": 9,
"enx": 10,
"txt": "is"
},
{
"strt": 10,
"enx": 12,
"txt": "composed of"
},
{
"strt": 30,
"enx": 31,
"txt": "is"
}
]
],
"wkd": [],
"nns": [
{
"strt": 1,
"txt": "cell"
},
{
"strt": 2,
"txt": "wall"
},
{
"strt": 5,
"txt": "cerevisiae"
},
{
"strt": 6,
"txt": "var"
},
{
"strt": 16,
"txt": "layer"
},
{
"strt": 24,
"txt": "branched"
},
{
"strt": 25,
"txt": "structure"
},
{
"strt": 29,
"txt": "layer"
},
{
"strt": 34,
"txt": "mannoproteins"
}
],
"pnns": [
{
"strt": 4,
"txt": "S."
},
{
"strt": 8,
"txt": "boulardii"
},
{
"strt": 21,
"txt": "β"
}
],
"vrbs": [
{
"strt": 10,
"txt": "composed"
},
{
"strt": 31,
"txt": "made"
}
],
"conj": [],
"disj": [],
"noms": [
{
"strt": 2,
"txt": "wall of"
}
],
"suchs": [],
"scispcy": {
"sentence": "The cell wall of S. cerevisiae var. boulardii is composed of a rigid inner polysaccharide layer with a 1,3-β-glucan branched structure while the outer layer is made up of mannoproteins.",
"pos": [
{
"txt": "The",
"lemma": "the",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "cell",
"lemma": "cell",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "wall",
"lemma": "wall",
"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "S.",
"lemma": "s.",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "cerevisiae",
"lemma": "cerevisiae",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "var",
"lemma": "var",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
},
{
"txt": "boulardii",
"lemma": "boulardii",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubjpass"
},
{
"txt": "is",
"lemma": "be",
"pos": "AUX",
"tag": "VBZ",
"dep": "auxpass"
},
{
"txt": "composed",
"lemma": "compose",
"pos": "VERB",
"tag": "VBN",
"dep": "ROOT"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "a",
"lemma": "a",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "rigid",
"lemma": "rigid",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "inner",
"lemma": "inner",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "polysaccharide",
"lemma": "polysaccharide",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "layer",
"lemma": "layer",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": "with",
"lemma": "with",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "a",
"lemma": "a",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "1,3-β-glucan",
"lemma": "1,3-β-glucan",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "branched",
"lemma": "branched",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "structure",
"lemma": "structure",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": "while",
"lemma": "while",
"pos": "SCONJ",
"tag": "IN",
"dep": "mark"
},
{
"txt": "the",
"lemma": "the",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "outer",
"lemma": "outer",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "layer",
"lemma": "layer",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubjpass"
},
{
"txt": "is",
"lemma": "be",
"pos": "AUX",
"tag": "VBZ",
"dep": "auxpass"
},
{
"txt": "made",
"lemma": "make",
"pos": "VERB",
"tag": "VBN",
"dep": "advcl"
},
{
"txt": "up",
"lemma": "up",
"pos": "ADP",
"tag": "RP",
"dep": "compound:prt"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "mannoproteins",
"lemma": "mannoprotein",
"pos": "NOUN",
"tag": "NNS",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
{
"@URI": "http://dbpedia.org/resource/Cell_wall",
"@support": "1421",
"@types": "",
"@surfaceForm": "cell wall",
"@offset": "4",
"@similarityScore": "0.9999998080372634",
"@percentageOfSecondRank": "1.9196274858182756E-7"
},
{
"@URI": "http://dbpedia.org/resource/Saccharomyces_cerevisiae",
"@support": "1227",
"@types": "",
"@surfaceForm": "S. cerevisiae",
"@offset": "17",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Polysaccharide",
"@support": "979",
"@types": "",
"@surfaceForm": "polysaccharide",
"@offset": "75",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
}
],
"ents": {
"name": "polysaccharide",
"strt": 15,
"umls": []
}
}
},
"nouns": [
"The cell wall of S. cerevisiae var. boulardii",
"The cell wall",
"S. cerevisiae var. boulardii",
"a rigid inner polysaccharide layer with a 1,3-β-glucan branched structure",
"a rigid inner polysaccharide layer",
"a 1,3-β-glucan branched structure",
"1,3-β-glucan",
"the outer layer",
"mannoproteins"
],
"verbs": [
"is composed of a rigid inner polysaccharide layer with a 1,3-β-glucan branched structure while the outer layer is made up of mannoproteins",
"composed of a rigid inner polysaccharide layer with a 1,3-β-glucan branched structure while the outer layer is made up of mannoproteins",
"is made up of mannoproteins",
"made up of mannoproteins"
],
"relns": []
},
{
"text": "The total mass of S. cerevisiae var. boulardii in terms of dry weight is almost 30% and the estimated total polysaccharide and protein contents are 85% and 15%, respectively.",
"spcy": {
"data": [
[
{
"strt": 14,
"enx": 15,
"txt": "is"
},
{
"strt": 26,
"enx": 27,
"txt": "are"
}
],
[
{
"strt": 14,
"enx": 15,
"txt": "is"
},
{
"strt": 26,
"enx": 27,
"txt": "are"
}
]
],
"wkd": [],
"nns": [
{
"strt": 2,
"txt": "mass"
},
{
"strt": 5,
"txt": "cerevisiae"
},
{
"strt": 6,
"txt": "var"
},
{
"strt": 10,
"txt": "terms"
},
{
"strt": 13,
"txt": "weight"
},
{
"strt": 17,
"txt": "%"
},
{
"strt": 22,
"txt": "polysaccharide"
},
{
"strt": 24,
"txt": "protein"
},
{
"strt": 25,
"txt": "contents"
},
{
"strt": 28,
"txt": "%"
},
{
"strt": 31,
"txt": "%"
}
],
"pnns": [
{
"strt": 4,
"txt": "S."
},
{
"strt": 8,
"txt": "boulardii"
}
],
"vrbs": [
{
"strt": 20,
"txt": "estimated"
}
],
"conj": [
{
"strt": 18,
"txt": "and"
},
{
"strt": 23,
"txt": "and"
},
{
"strt": 29,
"txt": "and"
},
{
"strt": 32,
"txt": ","
}
],
"disj": [],
"noms": [
{
"strt": 2,
"txt": "mass of"
},
{
"strt": 10,
"txt": "terms of"
}
],
"suchs": [],
"scispcy": {
"sentence": "The total mass of S. cerevisiae var. boulardii in terms of dry weight is almost 30% and the estimated total polysaccharide and protein contents are 85% and 15%, respectively.",
"pos": [
{
"txt": "The",
"lemma": "the",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "total",
"lemma": "total",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "mass",
"lemma": "mass",
"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "S.",
"lemma": "s.",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "cerevisiae",
"lemma": "cerevisiae",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "var",
"lemma": "var",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
},
{
"txt": "boulardii",
"lemma": "boulardii",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubj"
},
{
"txt": "in",
"lemma": "in",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "terms",
"lemma": "term",
"pos": "NOUN",
"tag": "NNS",
"dep": "nmod"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "dry",
"lemma": "dry",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "weight",
"lemma": "weight",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": "is",
"lemma": "be",
"pos": "AUX",
"tag": "VBZ",
"dep": "cop"
},
{
"txt": "almost",
"lemma": "almost",
"pos": "ADV",
"tag": "RB",
"dep": "advmod"
},
{
"txt": "30",
"lemma": "30",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "%",
"lemma": "%",
"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "the",
"lemma": "the",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "estimated",
"lemma": "estimate",
"pos": "VERB",
"tag": "VBN",
"dep": "amod"
},
{
"txt": "total",
"lemma": "total",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "polysaccharide",
"lemma": "polysaccharide",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubj"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "protein",
"lemma": "protein",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "contents",
"lemma": "content",
"pos": "NOUN",
"tag": "NNS",
"dep": "conj"
},
{
"txt": "are",
"lemma": "be",
"pos": "AUX",
"tag": "VBP",
"dep": "cop"
},
{
"txt": "85",
"lemma": "85",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "%",
"lemma": "%",
"pos": "NOUN",
"tag": "NN",
"dep": "conj"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "15",
"lemma": "15",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "%",
"lemma": "%",
"pos": "NOUN",
"tag": "NN",
"dep": "conj"
},
{
"txt": ",",
"lemma": ",",
"pos": "PUNCT",
"tag": ",",
"dep": "punct"
},
{
"txt": "respectively",
"lemma": "respectively",
"pos": "ADV",
"tag": "RB",
"dep": "advmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
{
"@URI": "http://dbpedia.org/resource/Saccharomyces_cerevisiae",
"@support": "1227",
"@types": "",
"@surfaceForm": "S. cerevisiae",
"@offset": "18",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Polysaccharide",
"@support": "979",
"@types": "",
"@surfaceForm": "polysaccharide",
"@offset": "108",
"@similarityScore": "0.9999999999980105",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Protein",
"@support": "59988",
"@types": "",
"@surfaceForm": "protein",
"@offset": "127",
"@similarityScore": "0.9999990577051853",
"@percentageOfSecondRank": "6.82176003406221E-7"
}
],
"ents": {
"name": "protein",
"strt": 24,
"umls": [
{
"cid": "C0033684",
"canonical": "Proteins",
"aliases": [
"protein",
"Protein, NOS",
"proteins",
"Protein",
"gene product",
"PROTEIN",
"Product containing protein (product)",
"Protein (substance)",
"PROTEINS",
"Protein-containing product",
"Proteins"
],
"types": [
"T116",
"T123"
],
"definition": "Linear POLYPEPTIDES that are synthesized on RIBOSOMES and may be further modified, crosslinked, cleaved, or assembled into complex proteins with several subunits. The specific sequence of AMINO ACIDS determines the shape the polypeptide will take, during PROTEIN FOLDING, and the function of the protein."
},
{
"cid": "C1521746",
"canonical": "Protein Info",
"aliases": [
"Protein",
"Protein Info"
],
"types": [
"T077"
],
"definition": "Protein; provides access to the encoding gene via its GenBank Accession, the taxon in which this instance of the protein occurs, and references to homologous proteins in other species."
},
{
"cid": "C0038164",
"canonical": "Staphylococcal Protein A",
"aliases": [
"STAPHYLOCOCCAL PROTEIN A",
"staphylococcus aureus protein A",
"Staphylococcal Protein A",
"protein a",
"a protein",
"Staph. Protein A",
"Protein A, Staphylococcal",
"S. aureus protein A",
"Staphylococcal protein A",
"Staphylococcus aureus Protein A",
"Protein A"
],
"types": [
"T116",
"T129",
"T130"
],
"definition": "A protein present in the cell wall of most Staphylococcus aureus strains. The protein selectively binds to the Fc region of human normal and myeloma-derived IMMUNOGLOBULIN G. It elicits antibody activity and may cause hypersensitivity reactions due to histamine release; has also been used as cell surface antigen marker and in the clinical assessment of B lymphocyte function."
},
{
"cid": "C5575473",
"canonical": "Saposin-A, Human",
"aliases": [
"Saposin A",
"Saposin-A",
"SAPA",
"Protein A"
],
"types": [
"T116",
"T123"
],
"definition": "Saposin-A (83 aa, ~9 kDa) is encoded by the human PSAP gene. This protein is involved in promoting the hydrolysis of glucosylceramide and galactosylceramide by beta-glucosylceramidase and beta-galactosylceramidase, respectively."
},
{
"cid": "C0872079",
"canonical": "Protein-Protein Interaction",
"aliases": [
"Protein-protein interactions",
"protein interaction",
"interactions protein",
"interaction protein",
"protein protein interaction"
],
"types": [
"T044"
],
"definition": "Temporary, non-covalent binding between protein molecules. Protein-protein interactions occur as a result of intermolecular physical forces and spatial complementation between domains or motifs. This interaction can be either homotypic or heterotypic and effect protein structure, conformation, and function."
}
]
}
}
},
"nouns": [
"The total mass of S. cerevisiae var. boulardii in terms of dry weight",
"The total mass",
"S. cerevisiae var. boulardii in terms of dry weight",
"S. cerevisiae var. boulardii",
"terms of dry weight",
"terms",
"dry weight",
"almost 30% and the estimated total polysaccharide",
"almost 30%",
"the estimated total polysaccharide",
"protein contents",
"85% and 15%"
],
"verbs": [
"is almost 30% and the estimated total polysaccharide",
"are 85% and 15%, respectively"
],
"relns": []
},
{
"text": "Biochemical characterization of S. cerevisiae var. boulardii confirmed the presence of glucose, mannose and N-acetylglucosamine up to 90%, 20% and 2%, respectively.",
"spcy": {
"data": [
[],
[]
],
"wkd": [],
"nns": [
{
"strt": 1,
"txt": "characterization"
},
{
"strt": 4,
"txt": "cerevisiae"
},
{
"strt": 5,
"txt": "var"
},
{
"strt": 10,
"txt": "presence"
},
{
"strt": 12,
"txt": "glucose"
},
{
"strt": 14,
"txt": "mannose"
},
{
"strt": 16,
"txt": "N"
},
{
"strt": 17,
"txt": "-"
},
{
"strt": 18,
"txt": "acetylglucosamine"
},
{
"strt": 22,
"txt": "%"
},
{
"strt": 25,
"txt": "%"
},
{
"strt": 28,
"txt": "%"
}
],
"pnns": [
{
"strt": 3,
"txt": "S."
},
{
"strt": 7,
"txt": "boulardii"
}
],
"vrbs": [
{
"strt": 8,
"txt": "confirmed"
}
],
"conj": [
{
"strt": 13,
"txt": ","
},
{
"strt": 15,
"txt": "and"
},
{
"strt": 23,
"txt": ","
},
{
"strt": 26,
"txt": "and"
},
{
"strt": 29,
"txt": ","
}
],
"disj": [],
"noms": [
{
"strt": 1,
"txt": "characterization of"
},
{
"strt": 10,
"txt": "presence of"
}
],
"suchs": [],
"scispcy": {
"sentence": "Biochemical characterization of S. cerevisiae var. boulardii confirmed the presence of glucose, mannose and N-acetylglucosamine up to 90%, 20% and 2%, respectively.",
"pos": [
{
"txt": "Biochemical",
"lemma": "biochemical",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "characterization",
"lemma": "characterization",
"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "S.",
"lemma": "s.",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "cerevisiae",
"lemma": "cerevisiae",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "var",
"lemma": "var",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
},
{
"txt": "boulardii",
"lemma": "boulardii",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubj"
},
{
"txt": "confirmed",
"lemma": "confirm",
"pos": "VERB",
"tag": "VBD",
"dep": "ROOT"
},
{
"txt": "the",
"lemma": "the",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "presence",
"lemma": "presence",
"pos": "NOUN",
"tag": "NN",
"dep": "dobj"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "glucose",
"lemma": "glucose",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": ",",
"lemma": ",",
"pos": "PUNCT",
"tag": ",",
"dep": "punct"
},
{
"txt": "mannose",
"lemma": "mannose",
"pos": "NOUN",
"tag": "NN",
"dep": "conj"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "N-acetylglucosamine",
"lemma": "n-acetylglucosamine",
"pos": "NOUN",
"tag": "NN",
"dep": "conj"
},
{
"txt": "up",
"lemma": "up",
"pos": "ADP",
"tag": "IN",
"dep": "advmod"
},
{
"txt": "to",
"lemma": "to",
"pos": "PART",
"tag": "TO",
"dep": "dep"
},
{
"txt": "90",
"lemma": "90",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "%",
"lemma": "%",
"pos": "NOUN",
"tag": "NN",
"dep": "conj"
},
{
"txt": ",",
"lemma": ",",
"pos": "PUNCT",
"tag": ",",
"dep": "punct"
},
{
"txt": "20",
"lemma": "20",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "%",
"lemma": "%",
"pos": "NOUN",
"tag": "NN",
"dep": "appos"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "2",
"lemma": "2",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "%",
"lemma": "%",
"pos": "NOUN",
"tag": "NN",
"dep": "conj"
},
{
"txt": ",",
"lemma": ",",
"pos": "PUNCT",
"tag": ",",
"dep": "punct"
},
{
"txt": "respectively",
"lemma": "respectively",
"pos": "ADV",
"tag": "RB",
"dep": "advmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
{
"@URI": "http://dbpedia.org/resource/Saccharomyces_cerevisiae",
"@support": "1227",
"@types": "",
"@surfaceForm": "S. cerevisiae",
"@offset": "32",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Glucose",
"@support": "7737",
"@types": "Wikidata:Q11173,DUL:ChemicalObject,DBpedia:ChemicalSubstance,DBpedia:ChemicalCompound",
"@surfaceForm": "glucose",
"@offset": "87",
"@similarityScore": "0.9999999969274711",
"@percentageOfSecondRank": "3.049612906111595E-9"
},
{
"@URI": "http://dbpedia.org/resource/Mannose",
"@support": "442",
"@types": "Wikidata:Q11173,DUL:ChemicalObject,DBpedia:ChemicalSubstance,DBpedia:ChemicalCompound",
"@surfaceForm": "mannose",
"@offset": "96",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/N-Acetylglucosamine",
"@support": "194",
"@types": "Wikidata:Q11173,DUL:ChemicalObject,DBpedia:ChemicalSubstance,DBpedia:ChemicalCompound",
"@surfaceForm": "N-acetylglucosamine",
"@offset": "108",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
}
],
"ents": {
"name": "N-acetylglucosamine",
"strt": 16,
"umls": [
{
"cid": "C0001056",
"canonical": "acetylglucosamine",
"aliases": [
"2 Acetamido 2 Deoxyglucose",
"Acetylglucosamine",
"acetylglucosamine",
"2-Acetamido-2-Deoxy-D-Glucose",
"N-Acetylchitosamine",
"N-Acetyl-D-Glucosamine",
"N Acetyl D Glucosamine",
"n-Acetyl glucosamine",
"n-acetyl glucosamine",
"2-Acetamido-2-Deoxyglucose",
"N-Acetyl-D-glucosamine",
"n-acetylglucosamine",
"N acetylglucosamine",
"N-ACETYLGLUCOSAMINE",
"N-Acetylglucosamine",
"2 Acetamido 2 Deoxy D Glucose",
"2-Acetamido-2-deoxy-D-glucose",
"N-Acetylglucosamine (substance)",
"N-Acetyl Glucosamine D-",
"aldehydo-N-acetyl-D-glucosamine",
"D-Glucose, 2-(acetylamino)-2-deoxy-",
"N-acetylglucosamine",
"D-GlcNAc"
],
"types": [
"T109",
"T121"
],
"definition": "The N-acetyl derivative of glucosamine."
},
{
"cid": "C1156866",
"canonical": "N-acetylglucosamine biosynthetic process",
"aliases": [
"N-acetylglucosamine synthesis",
"N-acetylglucosamine biosynthesis",
"N-acetylglucosamine formation",
"N-acetylglucosamine anabolism"
],
"types": [
"T044"
],
"definition": "The chemical reactions and pathways resulting in the formation of N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide group of a glycoprotein. [ISBN:0198506732]"
},
{
"cid": "C0067710",
"canonical": "Receptors, N-Acetylglucosamine",
"aliases": [
"GlcNAc Specific Lectin",
"N Acetylglucosamine Receptor",
"N-Acetylglucosamine Receptor",
"N Acetylglucosamine Receptors",
"Receptor, N-Acetylglucosamine",
"N-Acetylglucosamine Receptors",
"Lectin, GlcNAc Specific",
"N-Acetylglucosamine Specific Lectin",
"Lectin, N-Acetylglucosamine Specific",
"N Acetylglucosamine Specific Lectin",
"Receptors, N Acetylglucosamine"
],
"types": [
"T116",
"T192"
],
"definition": "Cell surface receptors that bind to ACETYLGLUCOSAMINE."
},
{
"cid": "C1099360",
"canonical": "HNRNPM protein, human",
"aliases": [
"HNRPM protein, human",
"HNRNPM4 protein, human",
"HNRPM4 protein, human",
"heterogeneous nuclear ribonucleoprotein M4, human",
"HTGR1 protein, human",
"HNRNPM protein, human",
"hnRNA-Binding Protein M4",
"heterogeneous nuclear ribonucleoprotein M, human",
"CEA Receptor",
"Heterogeneous Nuclear Ribonucleoprotein M",
"M4 Protein",
"hnRNP M",
"N-Acetylglucosamine Receptor 1"
],
"types": [
"T116",
"T123"
],
"definition": "Heterogeneous nuclear ribonucleoprotein M (730 aa, ~78 kDa) is encoded by the human HNRNPM gene. This protein plays a role in the mediation of RNA splicing."
},
{
"cid": "C0041993",
"canonical": "Uridine Diphosphate N-Acetylglucosamine",
"aliases": [
"UDP N-acetylglucosamine",
"Uridine 5'-(trihydrogen diphosphate), P'-(2-(acetylamino)-2-deoxy-alpha-D-glucopyranosyl) ester",
"Acetylglucosamine, UDP",
"Uridine Diphospho-N-Acetylglucosamine",
"Diphospho-N-Acetylglucosamine, Uridine",
"Diphosphate N-Acetylglucosamine, Uridine",
"N-Acetylglucosamine, Uridine Diphosphate",
"UDPGNAc",
"Uridine Diphosphate N Acetylglucosamine",
"Uridine Diphospho N Acetylglucosamine",
"Uridine Pyrophosphoacetylglucosamine",
"Pyrophosphoacetylglucosamine, Uridine",
"uridine diphosphate N-acetylglucosamine",
"UDP Acetylglucosamine"
],
"types": [
"T114",
"T123"
],
"definition": "Serves as the biological precursor of insect chitin, of muramic acid in bacterial cell walls, and of sialic acids in mammalian glycoproteins."
}
]
}
}
},
"nouns": [
"Biochemical characterization of S. cerevisiae var. boulardii",
"Biochemical characterization",
"S. cerevisiae var. boulardii",
"the presence of glucose, mannose and N-acetylglucosamine",
"the presence",
"glucose, mannose and N-acetylglucosamine",
"90%, 20% and 2%",
"90%",
"20%",
"2%"
],
"verbs": [
"confirmed the presence of glucose, mannose and N-acetylglucosamine up to 90%, 20% and 2%, respectively"
],
"relns": []
},
{
"text": "Glucose to glucose interaction is associated with β-1,3 and β-1,6 linkages.",
"spcy": {
"data": [
[
{
"strt": 4,
"enx": 5,
"txt": "is"
}
],
[
{
"strt": 4,
"enx": 5,
"txt": "is"
},
{
"strt": 5,
"enx": 6,
"txt": "associated"
},
{
"strt": 5,
"enx": 7,
"txt": "associated with"
}
]
],
"wkd": [],
"nns": [
{
"strt": 0,
"txt": "Glucose"
},
{
"strt": 2,
"txt": "glucose"
},
{
"strt": 3,
"txt": "interaction"
},
{
"strt": 10,
"txt": "linkages"
}
],
"pnns": [
{
"strt": 7,
"txt": "β-1,3"
},
{
"strt": 9,
"txt": "β-1,6"
}
],
"vrbs": [
{
"strt": 5,
"txt": "associated"
}
],
"conj": [
{
"strt": 8,
"txt": "and"
}
],
"disj": [],
"noms": [],
"suchs": [],
"scispcy": {
"sentence": "Glucose to glucose interaction is associated with β-1,3 and β-1,6 linkages.",
"pos": [
{
"txt": "Glucose",
"lemma": "glucose",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubjpass"
},
{
"txt": "to",
"lemma": "to",
"pos": "PART",
"tag": "TO",
"dep": "case"
},
{
"txt": "glucose",
"lemma": "glucose",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "interaction",
"lemma": "interaction",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": "is",
"lemma": "be",
"pos": "AUX",
"tag": "VBZ",
"dep": "auxpass"
},
{
"txt": "associated",
"lemma": "associate",
"pos": "VERB",
"tag": "VBN",
"dep": "ROOT"
},
{
"txt": "with",
"lemma": "with",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "β-1,3",
"lemma": "β-1,3",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "β-1,6",
"lemma": "β-1,6",
"pos": "NOUN",
"tag": "NN",
"dep": "conj"
},
{
"txt": "linkages",
"lemma": "linkage",
"pos": "NOUN",
"tag": "NNS",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
{
"@URI": "http://dbpedia.org/resource/Glucose",
"@support": "7737",
"@types": "Wikidata:Q11173,DUL:ChemicalObject,DBpedia:ChemicalSubstance,DBpedia:ChemicalCompound",
"@surfaceForm": "Glucose",
"@offset": "0",
"@similarityScore": "0.9999999998991456",
"@percentageOfSecondRank": "9.923152613025658E-11"
},
{
"@URI": "http://dbpedia.org/resource/Glucose",
"@support": "7737",
"@types": "Wikidata:Q11173,DUL:ChemicalObject,DBpedia:ChemicalSubstance,DBpedia:ChemicalCompound",
"@surfaceForm": "glucose",
"@offset": "11",
"@similarityScore": "0.999999991192638",
"@percentageOfSecondRank": "7.545215777381319E-9"
}
],
"ents": {
"name": "glucose",
"strt": 2,
"umls": []
}
}
},
"nouns": [
"Glucose to glucose interaction",
"Glucose",
"glucose interaction",
"β-1,3 and β-1,6 linkages"
],
"verbs": [
"is associated with β-1,3 and β-1,6 linkages",
"associated with β-1,3 and β-1,6 linkages"
],
"relns": []
},
{
"text": "β-1,3 glucan is responsible for the elasticity and strength of the yeast cell wall.",
"spcy": {
"data": [
[
{
"strt": 2,
"enx": 3,
"txt": "is"
}
],
[
{
"strt": 2,
"enx": 3,
"txt": "is"
},
{
"strt": 3,
"enx": 5,
"txt": "responsible for"
}
]
],
"wkd": [],
"nns": [
{
"strt": 1,
"txt": "glucan"
},
{
"strt": 6,
"txt": "elasticity"
},
{
"strt": 8,
"txt": "strength"
},
{
"strt": 11,
"txt": "yeast"
},
{
"strt": 12,
"txt": "cell"
},
{
"strt": 13,
"txt": "wall"
}
],
"pnns": [
{
"strt": 0,
"txt": "β-1,3"
}
],
"vrbs": [],
"conj": [
{
"strt": 7,
"txt": "and"
}
],
"disj": [],
"noms": [
{
"strt": 8,
"txt": "strength of"
}
],
"suchs": [],
"scispcy": {
"sentence": "β-1,3 glucan is responsible for the elasticity and strength of the yeast cell wall.",
"pos": [
{
"txt": "β-1,3",
"lemma": "β-1,3",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "glucan",
"lemma": "glucan",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubj"
},
{
"txt": "is",
"lemma": "be",
"pos": "AUX",
"tag": "VBZ",
"dep": "cop"
},
{
"txt": "responsible",
"lemma": "responsible",
"pos": "ADJ",
"tag": "JJ",
"dep": "ROOT"
},
{
"txt": "for",
"lemma": "for",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "the",
"lemma": "the",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "elasticity",
"lemma": "elasticity",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "strength",
"lemma": "strength",
"pos": "NOUN",
"tag": "NN",
"dep": "conj"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "the",
"lemma": "the",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "yeast",
"lemma": "yeast",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "cell",
"lemma": "cell",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "wall",
"lemma": "wall",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
{
"@URI": "http://dbpedia.org/resource/Glucan",
"@support": "90",
"@types": "",
"@surfaceForm": "glucan",
"@offset": "6",
"@similarityScore": "0.9999999999998863",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Elastic_modulus",
"@support": "383",
"@types": "",
"@surfaceForm": "elasticity",
"@offset": "36",
"@similarityScore": "0.9550888951977035",
"@percentageOfSecondRank": "0.02866285709223718"
},
{
"@URI": "http://dbpedia.org/resource/Yeast",
"@support": "4372",
"@types": "Wikidata:Q19088,DBpedia:Species,DBpedia:Eukaryote,DBpedia:Fungus",
"@surfaceForm": "yeast",
"@offset": "67",
"@similarityScore": "0.994080689970664",
"@percentageOfSecondRank": "0.00594997162564108"
},
{
"@URI": "http://dbpedia.org/resource/Cell_wall",
"@support": "1421",
"@types": "",
"@surfaceForm": "cell wall",
"@offset": "73",
"@similarityScore": "0.9999999987734896",
"@percentageOfSecondRank": "7.163751341836872E-10"
}
],
"ents": {
"name": "cell wall",
"strt": 12,
"umls": []
}
}
},
"nouns": [
"β-1,3 glucan",
"the elasticity and strength of the yeast cell wall",
"the elasticity and strength",
"the yeast cell wall"
],
"verbs": [
"is responsible for the elasticity and strength of the yeast cell wall"
],
"relns": []
},
{
"text": "The lateral cell wall of S. cerevisiae var. boulardii is composed of straight chitin chains of 1–2% of total dry weight [9].",
"spcy": {
"data": [
[
{
"strt": 10,
"enx": 11,
"txt": "is"
}
],
[
{
"strt": 10,
"enx": 11,
"txt": "is"
},
{
"strt": 11,
"enx": 13,
"txt": "composed of"
}
]
],
"wkd": [],
"nns": [
{
"strt": 2,
"txt": "cell"
},
{
"strt": 3,
"txt": "wall"
},
{
"strt": 6,
"txt": "cerevisiae"
},
{
"strt": 7,
"txt": "var"
},
{
"strt": 14,
"txt": "chitin"
},
{
"strt": 15,
"txt": "chains"
},
{
"strt": 18,
"txt": "%"
},
{
"strt": 22,
"txt": "weight"
}
],
"pnns": [
{
"strt": 5,
"txt": "S."
},
{
"strt": 9,
"txt": "boulardii"
}
],
"vrbs": [
{
"strt": 11,
"txt": "composed"
}
],
"conj": [],
"disj": [],
"noms": [
{
"strt": 3,
"txt": "wall of"
},
{
"strt": 15,
"txt": "chains of"
},
{
"strt": 18,
"txt": "% of"
}
],
"suchs": [],
"scispcy": {
"sentence": "The lateral cell wall of S. cerevisiae var. boulardii is composed of straight chitin chains of 1–2% of total dry weight [9].",
"pos": [
{
"txt": "The",
"lemma": "the",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "lateral",
"lemma": "lateral",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "cell",
"lemma": "cell",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "wall",
"lemma": "wall",
"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "S.",
"lemma": "s.",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "cerevisiae",
"lemma": "cerevisiae",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "var",
"lemma": "var",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
},
{
"txt": "boulardii",
"lemma": "boulardii",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubjpass"
},
{
"txt": "is",
"lemma": "be",
"pos": "AUX",
"tag": "VBZ",
"dep": "auxpass"
},
{
"txt": "composed",
"lemma": "compose",
"pos": "VERB",
"tag": "VBN",
"dep": "ROOT"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "straight",
"lemma": "straight",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "chitin",
"lemma": "chitin",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "chains",
"lemma": "chain",
"pos": "NOUN",
"tag": "NNS",
"dep": "nmod"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "1–2",
"lemma": "1–2",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "%",
"lemma": "%",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "total",
"lemma": "total",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "dry",
"lemma": "dry",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "weight",
"lemma": "weight",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": "[",
"lemma": "[",
"pos": "PUNCT",
"tag": "-LRB-",
"dep": "punct"
},
{
"txt": "9",
"lemma": "9",
"pos": "NUM",
"tag": "CD",
"dep": "nummod"
},
{
"txt": "]",
"lemma": "]",
"pos": "PUNCT",
"tag": "-RRB-",
"dep": "punct"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
{
"@URI": "http://dbpedia.org/resource/Cell_wall",
"@support": "1421",
"@types": "",
"@surfaceForm": "cell wall",
"@offset": "12",
"@similarityScore": "0.9999998670072134",
"@percentageOfSecondRank": "1.107554702930186E-7"
},
{
"@URI": "http://dbpedia.org/resource/Saccharomyces_cerevisiae",
"@support": "1227",
"@types": "",
"@surfaceForm": "S. cerevisiae",
"@offset": "25",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Chitin",
"@support": "754",
"@types": "",
"@surfaceForm": "chitin",
"@offset": "78",
"@similarityScore": "0.9999999999994884",
"@percentageOfSecondRank": "0.0"
}
],
"ents": {
"name": "chitin",
"strt": 14,
"umls": []
}
}
},
"nouns": [
"The lateral cell wall of S. cerevisiae var. boulardii",
"The lateral cell wall",
"S. cerevisiae var. boulardii",
"straight chitin chains of 1–2% of total dry weight",
"straight chitin chains",
"1–2% of total dry weight",
"1–2%",
"total dry weight",
"9"
],
"verbs": [
"is composed of straight chitin chains of 1–2% of total dry weight [9]",
"composed of straight chitin chains of 1–2% of total dry weight [9]"
],
"relns": []
}
]
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment