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Full with different paragraph
{
"para": "Saccharomyces cerevisiae var. boulardii is the most significant probiotic yeast species. S. cerevisiae var. boulardii is a eukaryotic organism that has been used in scientific investigations since the time of its discovery [2]. This model organism has unique importance because of its alterable and flexible genome.",
"sents": [
"Saccharomyces cerevisiae var. boulardii is the most significant probiotic yeast species.",
"S. cerevisiae var. boulardii is a eukaryotic organism that has been used in scientific investigations since the time of its discovery [2].",
"This model organism has unique importance because of its alterable and flexible genome."
],
"nlp": {
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"number": "SINGULAR",
"gender": "UNKNOWN",
"animacy": "INANIMATE",
"beginIndex": 19,
"endIndex": 20,
"headIndex": 19,
"sentenceIndex": 1,
"position": 7
},
{
"mentionID": 12,
"mentionType": "PRONOMINAL",
"number": "SINGULAR",
"gender": "UNKNOWN",
"animacy": "INANIMATE",
"beginIndex": 8,
"endIndex": 9,
"headIndex": 8,
"sentenceIndex": 2,
"position": 4
}
],
"representative": 0
}
],
"mentions": [
[],
[
{
"text": "2",
"type": "CARDINAL",
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"end_char": 225
}
],
[]
]
},
"spcy": [
{
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"txt": "is"
}
],
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"txt": "is"
}
]
],
"wkd": [],
"nns": [
{
"strt": 1,
"txt": "cerevisiae"
},
{
"strt": 2,
"txt": "var"
},
{
"strt": 10,
"txt": "yeast"
},
{
"strt": 11,
"txt": "species"
}
],
"pnns": [
{
"strt": 0,
"txt": "Saccharomyces"
},
{
"strt": 4,
"txt": "boulardii"
}
],
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"suchs": [],
"scispcy": {
"sentence": "Saccharomyces cerevisiae var. boulardii is the most significant probiotic yeast species.",
"pos": [
{
"txt": "Saccharomyces",
"lemma": "saccharomyces",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "cerevisiae",
"lemma": "cerevisiae",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "var",
"lemma": "var",
"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
},
{
"txt": "boulardii",
"lemma": "boulardii",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubj"
},
{
"txt": "is",
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"pos": "AUX",
"tag": "VBZ",
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},
{
"txt": "the",
"lemma": "the",
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{
"txt": "most",
"lemma": "most",
"pos": "ADV",
"tag": "RBS",
"dep": "advmod"
},
{
"txt": "significant",
"lemma": "significant",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "probiotic",
"lemma": "probiotic",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "yeast",
"lemma": "yeast",
"pos": "NOUN",
"tag": "NN",
"dep": "compound"
},
{
"txt": "species",
"lemma": "specie",
"pos": "NOUN",
"tag": "NNS",
"dep": "ROOT"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
}
],
"hearst": [],
"abbrev": [],
"dbp": [
{
"@URI": "http://dbpedia.org/resource/Saccharomyces_boulardii",
"@support": "31",
"@types": "",
"@surfaceForm": "Saccharomyces cerevisiae var. boulardii",
"@offset": "0",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Probiotic",
"@support": "542",
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"@surfaceForm": "probiotic",
"@offset": "64",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Yeast",
"@support": "4372",
"@types": "Wikidata:Q19088,DBpedia:Species,DBpedia:Eukaryote,DBpedia:Fungus",
"@surfaceForm": "yeast",
"@offset": "74",
"@similarityScore": "0.9554627549834945",
"@percentageOfSecondRank": "0.0360499925369379"
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{
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"@similarityScore": "0.9999999773187087",
"@percentageOfSecondRank": "1.3497871212410963E-8"
}
],
"ents": [
{
"name": "Saccharomyces cerevisiae var. boulardii",
"strt": 0,
"umls": []
},
{
"name": "probiotic",
"strt": 9,
"umls": [
{
"cid": "C0525033",
"canonical": "Probiotics",
"aliases": [
"probiotics",
"probiotic",
"Probiotic",
"PROBIOTIC",
"Probiotics"
],
"types": [
"T007"
],
"definition": "Live microbial DIETARY SUPPLEMENTS which beneficially affect the host animal by improving its intestinal microbial balance. Antibiotics and other related compounds are not included in this definition. In humans, lactobacilli are commonly used as probiotics, either as single species or in mixed culture with other bacteria. Other genera that have been used are bifidobacteria and streptococci. (J. Nutr. 1995;125:1401-12)"
}
]
},
{
"name": "yeast",
"strt": 10,
"umls": [
{
"cid": "C0036025",
"canonical": "Saccharomyces cerevisiae",
"aliases": [
"Baker Yeast",
"Saccharomyces cerevisiae",
"Yeast, Brewer's",
"cerevisiae saccharomyces",
"Brewers Yeast",
"brewer's or baker's yeast",
"Baker's yeast",
"Saccharomyces italicus",
"S cerevisiae",
"S. italicus",
"Saccharomyces uvarum var. melibiosus",
"S. oviformis",
"Saccharomyces cerevisiae (substance)",
"Yeast brewer's",
"S. uvarum var. melibiosus",
"S. cerevisiae",
"brewer yeast",
"Baker's Yeast",
"brewer's yeast",
"Brewer's yeast",
"Baker's Yeasts",
"Candida robusta",
"Baker's yeast (Saccharomyces cerevisiae)",
"Brewers' yeast",
"brewers yeast",
"Yeast, Baker",
"Mycoderma cerevisiae",
"Brewer's Yeast",
"S. capensis",
"brewers' yeast",
"Yeast, Baker's",
"Saccharomyces cerevisae",
"baker's yeast",
"Saccharomyces capensis",
"saccharomyces cerevisiae",
"Saccharomyces Cerevisiae",
"Yeast bakers",
"yeast",
"Saccharomyces cerevisiae (organism)",
"Saccharomyces oviformis"
],
"types": [
"T004"
],
"definition": "A species of the genus SACCHAROMYCES, family Saccharomycetaceae, order Saccharomycetales, known as \"baker's\" or \"brewer's\" yeast. The dried form is used as a dietary supplement."
},
{
"cid": "C0043392",
"canonical": "Yeast, Dried",
"aliases": [
"Dried Yeast",
"Yeast, dried",
"Yeast",
"Yeast, Dried",
"Nutritional Yeast",
"nutritional yeast",
"Yeast, Nutritional"
],
"types": [
"T168"
],
"definition": "The dry cells of any suitable strain of SACCHAROMYCES CEREVISIAE or CANDIDA. It can be obtained as a by-product from the brewing of beer or by growing on media not suitable for beer production. Dried yeast serves as a source of protein and VITAMIN B COMPLEX."
},
{
"cid": "C0043393",
"canonical": "Yeasts",
"aliases": [
"Yeast",
"Yeast (substance)",
"YEAST",
"Yeast, NOS",
"Yeasts",
"Yeast (organism)",
"yeast"
],
"types": [
"T004"
],
"definition": "A general term for single-celled rounded fungi that reproduce by budding. Brewers' and bakers' yeasts are SACCHAROMYCES CEREVISIAE; therapeutic dried yeast is YEAST, DRIED."
},
{
"cid": "C0717551",
"canonical": "Candida albicans allergenic extract",
"aliases": [
"Yeast",
"Candida albicans diagnostic allergen extract (product)",
"Candida albicans allergenic extract",
"YEAST",
"candida albicans extract",
"Yeasts",
"Yeast, unspecified",
"Yeast, Unspecified",
"Candida albicans diagnostic allergen extract",
"ALLERGENIC EXTRACT, CANDIDA ALBICANS",
"Candida albicans extract",
"yeast allergenic extract",
"yeast, unspecified",
"YEAST, UNSPECIFIED",
"CANDIDA ALBICANS",
"Candida albicans",
"yeast"
],
"types": [
"T121",
"T129"
],
"definition": null
},
{
"cid": "C0997449",
"canonical": "Monascus purpureus",
"aliases": [
"red yeast",
"Monascus rubiginosus",
"RED YEAST",
"Monascus purpurea",
"Monascus albidus",
"Monascus anka",
"monascus purpureus",
"Monascus purpureus",
"Monascus araneosus"
],
"types": [
"T004"
],
"definition": "Species in the family Monascaceae. M. purpureus is grown on cooked non-glutinous rice, producing a fermentation by-product known as red yeast rice. Red yeast rice contains a compound related to the statins that has been shown to reduce cholesterol levels."
}
]
},
{
"name": "species",
"strt": 11,
"umls": []
}
]
}
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"enx": 6,
"txt": "is"
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{
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"enx": 7,
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"enx": 11,
"txt": "has"
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{
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"txt": "used"
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{
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"txt": "cerevisiae"
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"txt": "var"
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{
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"txt": "organism"
},
{
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"txt": "investigations"
},
{
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"txt": "time"
},
{
"strt": 21,
"txt": "discovery"
}
],
"pnns": [
{
"strt": 0,
"txt": "S."
},
{
"strt": 4,
"txt": "boulardii"
}
],
"vrbs": [
{
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"txt": "used"
}
],
"conj": [],
"disj": [],
"noms": [
{
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"txt": "organism that"
},
{
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"txt": "time of"
}
],
"suchs": [],
"scispcy": {
"sentence": "S. cerevisiae var. boulardii is a eukaryotic organism that has been used in scientific investigations since the time of its discovery [2].",
"pos": [
{
"txt": "S.",
"lemma": "s.",
"pos": "X",
"tag": "FW",
"dep": "compound"
},
{
"txt": "cerevisiae",
"lemma": "cerevisiae",
"pos": "X",
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"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
"dep": "punct"
},
{
"txt": "boulardii",
"lemma": "boulardii",
"pos": "NOUN",
"tag": "NN",
"dep": "nsubj"
},
{
"txt": "is",
"lemma": "be",
"pos": "AUX",
"tag": "VBZ",
"dep": "cop"
},
{
"txt": "a",
"lemma": "a",
"pos": "DET",
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"dep": "det"
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{
"txt": "eukaryotic",
"lemma": "eukaryotic",
"pos": "ADJ",
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"dep": "amod"
},
{
"txt": "organism",
"lemma": "organism",
"pos": "NOUN",
"tag": "NN",
"dep": "ROOT"
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{
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"pos": "PRON",
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{
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"dep": "aux"
},
{
"txt": "been",
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"dep": "auxpass"
},
{
"txt": "used",
"lemma": "use",
"pos": "VERB",
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"dep": "acl:relcl"
},
{
"txt": "in",
"lemma": "in",
"pos": "ADP",
"tag": "IN",
"dep": "case"
},
{
"txt": "scientific",
"lemma": "scientific",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "investigations",
"lemma": "investigation",
"pos": "NOUN",
"tag": "NNS",
"dep": "nmod"
},
{
"txt": "since",
"lemma": "since",
"pos": "SCONJ",
"tag": "IN",
"dep": "case"
},
{
"txt": "the",
"lemma": "the",
"pos": "DET",
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},
{
"txt": "time",
"lemma": "time",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": "of",
"lemma": "of",
"pos": "ADP",
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"dep": "case"
},
{
"txt": "its",
"lemma": "its",
"pos": "PRON",
"tag": "PRP$",
"dep": "nmod:poss"
},
{
"txt": "discovery",
"lemma": "discovery",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": "[",
"lemma": "[",
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"tag": "-LRB-",
"dep": "punct"
},
{
"txt": "2",
"lemma": "2",
"pos": "NUM",
"tag": "CD",
"dep": "appos"
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{
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{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
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],
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"abbrev": [],
"dbp": [
{
"@URI": "http://dbpedia.org/resource/Saccharomyces_cerevisiae",
"@support": "1227",
"@types": "",
"@surfaceForm": "S. cerevisiae",
"@offset": "0",
"@similarityScore": "1.0",
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},
{
"@URI": "http://dbpedia.org/resource/Eukaryote",
"@support": "4244",
"@types": "",
"@surfaceForm": "eukaryotic",
"@offset": "34",
"@similarityScore": "1.0",
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}
],
"ents": [
{
"name": "S. cerevisiae",
"strt": 0,
"umls": []
},
{
"name": "eukaryotic",
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"umls": []
}
]
}
},
{
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],
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{
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"txt": "model"
},
{
"strt": 2,
"txt": "organism"
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{
"strt": 5,
"txt": "importance"
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{
"strt": 12,
"txt": "genome"
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],
"pnns": [],
"vrbs": [
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"txt": "has"
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],
"conj": [
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"txt": "and"
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],
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"noms": [],
"suchs": [],
"scispcy": {
"sentence": "This model organism has unique importance because of its alterable and flexible genome.",
"pos": [
{
"txt": "This",
"lemma": "this",
"pos": "DET",
"tag": "DT",
"dep": "det"
},
{
"txt": "model",
"lemma": "model",
"pos": "NOUN",
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"dep": "compound"
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{
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},
{
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"dep": "amod"
},
{
"txt": "importance",
"lemma": "importance",
"pos": "NOUN",
"tag": "NN",
"dep": "dobj"
},
{
"txt": "because",
"lemma": "because",
"pos": "SCONJ",
"tag": "IN",
"dep": "case"
},
{
"txt": "of",
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"pos": "ADP",
"tag": "IN",
"dep": "mwe"
},
{
"txt": "its",
"lemma": "its",
"pos": "PRON",
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"dep": "nmod:poss"
},
{
"txt": "alterable",
"lemma": "alterable",
"pos": "ADJ",
"tag": "JJ",
"dep": "amod"
},
{
"txt": "and",
"lemma": "and",
"pos": "CCONJ",
"tag": "CC",
"dep": "cc"
},
{
"txt": "flexible",
"lemma": "flexible",
"pos": "ADJ",
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"dep": "conj"
},
{
"txt": "genome",
"lemma": "genome",
"pos": "NOUN",
"tag": "NN",
"dep": "nmod"
},
{
"txt": ".",
"lemma": ".",
"pos": "PUNCT",
"tag": ".",
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}
],
"hearst": [],
"abbrev": [],
"dbp": [
{
"@URI": "http://dbpedia.org/resource/Model_organism",
"@support": "1713",
"@types": "",
"@surfaceForm": "model organism",
"@offset": "5",
"@similarityScore": "0.9999999999914024",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Genome",
"@support": "9658",
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"@surfaceForm": "genome",
"@offset": "80",
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],
"ents": [
{
"name": "model organism",
"strt": 1,
"umls": []
},
{
"name": "genome",
"strt": 12,
"umls": [
{
"cid": "C0017428",
"canonical": "Genome",
"aliases": [
"Genome, NOS",
"Genome",
"Genomes",
"genomes",
"genome",
"Genomic",
"Genome (substance)"
],
"types": [
"T028"
],
"definition": "The genetic complement of an organism, including all of its GENES, as represented in its DNA, or in some cases, its RNA."
},
{
"cid": "C2338314",
"canonical": "Genome - anatomical entity",
"aliases": [
"Genome"
],
"types": [
"T077"
],
"definition": "Anatomical set of genes in all the chromosomes."
},
{
"cid": "C0242965",
"canonical": "Genome, Plant",
"aliases": [
"Plant genome",
"Plant Genomes",
"Plant genomes",
"Plant Genome",
"Genomes, Plant",
"Plant genome (substance)"
],
"types": [
"T028"
],
"definition": "The genetic complement of a plant (PLANTS) as represented in its DNA."
},
{
"cid": "C0042720",
"canonical": "Viral Genome",
"aliases": [
"Genomes, Viral",
"Viral Genomes",
"Genome, Viral",
"Viral genomes",
"Viral Genome",
"Viral genome (substance)",
"Viral genome"
],
"types": [
"T028"
],
"definition": "The complete genetic complement contained in a DNA or RNA molecule in a virus."
},
{
"cid": "C1517519",
"canonical": "Genome Scan",
"aliases": [],
"types": [
"T063"
],
"definition": "To analyse the entire genome (total genetic complement) of an individual, organism, cell or tissue."
}
]
}
]
}
}
]
}
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