Skip to content

Instantly share code, notes, and snippets.

Show Gist options
  • Save KnowledgeGarden/e644b8585639438f202a85498ec64468 to your computer and use it in GitHub Desktop.
Save KnowledgeGarden/e644b8585639438f202a85498ec64468 to your computer and use it in GitHub Desktop.
{
"corefs": [
{
"chainId": "CHAIN10",
"cargo": [
{
"chain": "\"S. cerevisiae var. boulardii\"",
"sentence": "2"
},
{
"chain": "\"its\"",
"sentence": "2"
}
]
},
{
"chainId": "CHAIN13",
"cargo": [
{
"chain": "\"a eukaryotic organism that has been used in scientific investigations since the time of its discovery [ 2 ]\"",
"sentence": "2"
},
{
"chain": "\"This model organism\"",
"sentence": "3"
},
{
"chain": "\"its\"",
"sentence": "3"
}
]
}
],
"mentions": [
[
"\" text \"",
"\" Saccharomyces cerevisiae var. boulardii",
"cerevisiae var.",
"the most significant probiotic yeast species"
],
[
"2",
"S. cerevisiae var. boulardii",
"a eukaryotic organism that has been used in scientific investigations since the time of its discovery [ 2 ]",
"scientific investigations",
"the time of its discovery",
"its discovery",
"its"
],
[
"This model organism",
"its alterable and flexible genome",
"its"
],
[
"\" }"
]
],
"sentences": [
{
"text": "{\"text\":\"Saccharomyces cerevisiae var. boulardii is the most significant probiotic yeast species.",
"spcy": {
"data": [
[
{
"strt": 7,
"enx": 8,
"txt": "is"
}
],
[
{
"strt": 7,
"enx": 8,
"txt": "is"
}
]
],
"wkd": [],
"nns": [
{
"strt": 2,
"txt": "text\":\"Saccharomyces"
},
{
"strt": 3,
"txt": "cerevisiae"
},
{
"strt": 4,
"txt": "var"
},
{
"strt": 12,
"txt": "yeast"
},
{
"strt": 13,
"txt": "species"
}
],
"pnns": [
{
"strt": 6,
"txt": "boulardii"
}
],
"vrbs": [],
"conj": [],
"disj": [],
"noms": [],
"suchs": [],
"scispcy": {
"sentence": "{\"text\":\"Saccharomyces cerevisiae var. boulardii is the most significant probiotic yeast species.",
"pos": [
{
"txt": [
"{"
],
"lemma": [
"{"
],
"pos": [
"PUNCT"
],
"tag": [
"-LRB-"
],
"dep": "punct"
},
{
"txt": [
"\""
],
"lemma": [
"\""
],
"pos": [
"PUNCT"
],
"tag": [
"``"
],
"dep": "punct"
},
{
"txt": [
"text\":\"Saccharomyces"
],
"lemma": [
"text\":\"saccharomyce"
],
"pos": [
"NOUN"
],
"tag": [
"NNS"
],
"dep": "compound"
},
{
"txt": [
"cerevisiae"
],
"lemma": [
"cerevisiae"
],
"pos": [
"X"
],
"tag": [
"FW"
],
"dep": "compound"
},
{
"txt": [
"var"
],
"lemma": [
"var"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "ROOT"
},
{
"txt": [
"."
],
"lemma": [
"."
],
"pos": [
"PUNCT"
],
"tag": [
"."
],
"dep": "punct"
},
{
"txt": [
"boulardii"
],
"lemma": [
"boulardii"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "nsubj"
},
{
"txt": [
"is"
],
"lemma": [
"be"
],
"pos": [
"AUX"
],
"tag": [
"VBZ"
],
"dep": "cop"
},
{
"txt": [
"the"
],
"lemma": [
"the"
],
"pos": [
"DET"
],
"tag": [
"DT"
],
"dep": "det"
},
{
"txt": [
"most"
],
"lemma": [
"most"
],
"pos": [
"ADV"
],
"tag": [
"RBS"
],
"dep": "advmod"
},
{
"txt": [
"significant"
],
"lemma": [
"significant"
],
"pos": [
"ADJ"
],
"tag": [
"JJ"
],
"dep": "amod"
},
{
"txt": [
"probiotic"
],
"lemma": [
"probiotic"
],
"pos": [
"ADJ"
],
"tag": [
"JJ"
],
"dep": "amod"
},
{
"txt": [
"yeast"
],
"lemma": [
"yeast"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "compound"
},
{
"txt": [
"species"
],
"lemma": [
"specie"
],
"pos": [
"NOUN"
],
"tag": [
"NNS"
],
"dep": "ROOT"
},
{
"txt": [
"."
],
"lemma": [
"."
],
"pos": [
"PUNCT"
],
"tag": [
"."
],
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
[
{
"@URI": "http://dbpedia.org/resource/Probiotic",
"@support": "542",
"@types": "",
"@surfaceForm": "probiotic",
"@offset": "73",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Saccharomyces",
"@support": "176",
"@types": "",
"@surfaceForm": "yeast",
"@offset": "83",
"@similarityScore": "0.5892217293019744",
"@percentageOfSecondRank": "0.6720403423461281"
},
{
"@URI": "http://dbpedia.org/resource/Species",
"@support": "179043",
"@types": "",
"@surfaceForm": "species",
"@offset": "89",
"@similarityScore": "0.999994093073321",
"@percentageOfSecondRank": "4.767562338633929E-6"
}
]
],
"ents": {
"name": [
"species"
],
"strt": [
13
],
"umls": []
}
}
},
"nouns": [
"{\"text\":\"Saccharomyces cerevisiae var. boulardii is the most significant probiotic yeast species.",
"{\"text\"",
"Saccharomyces cerevisiae var. boulardii",
"the most significant probiotic yeast species"
],
"verbs": [
"is the most significant probiotic yeast species"
],
"relns": []
},
{
"text": "S. cerevisiae var. boulardii is a eukaryotic organism that has been used in scientific investigations since the time of its discovery [2].",
"spcy": {
"data": [
[
{
"strt": 5,
"enx": 6,
"txt": "is"
},
{
"strt": 10,
"enx": 11,
"txt": "has"
},
{
"strt": 10,
"enx": 12,
"txt": "has been"
}
],
[
{
"strt": 5,
"enx": 6,
"txt": "is"
},
{
"strt": 5,
"enx": 7,
"txt": "is a"
},
{
"strt": 10,
"enx": 11,
"txt": "has"
},
{
"strt": 12,
"enx": 13,
"txt": "used"
}
]
],
"wkd": [],
"nns": [
{
"strt": 2,
"txt": "var"
},
{
"strt": 8,
"txt": "organism"
},
{
"strt": 15,
"txt": "investigations"
},
{
"strt": 18,
"txt": "time"
},
{
"strt": 21,
"txt": "discovery"
}
],
"pnns": [
{
"strt": 0,
"txt": "S."
},
{
"strt": 4,
"txt": "boulardii"
}
],
"vrbs": [
{
"strt": 1,
"txt": "cerevisiae"
},
{
"strt": 12,
"txt": "used"
}
],
"conj": [],
"disj": [],
"noms": [
{
"strt": 8,
"txt": "organism that"
},
{
"strt": 18,
"txt": "time of"
}
],
"suchs": [],
"scispcy": {
"sentence": "S. cerevisiae var. boulardii is a eukaryotic organism that has been used in scientific investigations since the time of its discovery [2].",
"pos": [
{
"txt": [
"S."
],
"lemma": [
"s."
],
"pos": [
"X"
],
"tag": [
"FW"
],
"dep": "compound"
},
{
"txt": [
"cerevisiae"
],
"lemma": [
"cerevisiae"
],
"pos": [
"X"
],
"tag": [
"FW"
],
"dep": "compound"
},
{
"txt": [
"var"
],
"lemma": [
"var"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "ROOT"
},
{
"txt": [
"."
],
"lemma": [
"."
],
"pos": [
"PUNCT"
],
"tag": [
"."
],
"dep": "punct"
},
{
"txt": [
"boulardii"
],
"lemma": [
"boulardii"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "nsubj"
},
{
"txt": [
"is"
],
"lemma": [
"be"
],
"pos": [
"AUX"
],
"tag": [
"VBZ"
],
"dep": "cop"
},
{
"txt": [
"a"
],
"lemma": [
"a"
],
"pos": [
"DET"
],
"tag": [
"DT"
],
"dep": "det"
},
{
"txt": [
"eukaryotic"
],
"lemma": [
"eukaryotic"
],
"pos": [
"ADJ"
],
"tag": [
"JJ"
],
"dep": "amod"
},
{
"txt": [
"organism"
],
"lemma": [
"organism"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "ROOT"
},
{
"txt": [
"that"
],
"lemma": [
"that"
],
"pos": [
"PRON"
],
"tag": [
"WDT"
],
"dep": "nsubjpass"
},
{
"txt": [
"has"
],
"lemma": [
"have"
],
"pos": [
"AUX"
],
"tag": [
"VBZ"
],
"dep": "aux"
},
{
"txt": [
"been"
],
"lemma": [
"be"
],
"pos": [
"AUX"
],
"tag": [
"VBN"
],
"dep": "auxpass"
},
{
"txt": [
"used"
],
"lemma": [
"use"
],
"pos": [
"VERB"
],
"tag": [
"VBN"
],
"dep": "acl:relcl"
},
{
"txt": [
"in"
],
"lemma": [
"in"
],
"pos": [
"ADP"
],
"tag": [
"IN"
],
"dep": "case"
},
{
"txt": [
"scientific"
],
"lemma": [
"scientific"
],
"pos": [
"ADJ"
],
"tag": [
"JJ"
],
"dep": "amod"
},
{
"txt": [
"investigations"
],
"lemma": [
"investigation"
],
"pos": [
"NOUN"
],
"tag": [
"NNS"
],
"dep": "nmod"
},
{
"txt": [
"since"
],
"lemma": [
"since"
],
"pos": [
"SCONJ"
],
"tag": [
"IN"
],
"dep": "case"
},
{
"txt": [
"the"
],
"lemma": [
"the"
],
"pos": [
"DET"
],
"tag": [
"DT"
],
"dep": "det"
},
{
"txt": [
"time"
],
"lemma": [
"time"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "nmod"
},
{
"txt": [
"of"
],
"lemma": [
"of"
],
"pos": [
"ADP"
],
"tag": [
"IN"
],
"dep": "case"
},
{
"txt": [
"its"
],
"lemma": [
"its"
],
"pos": [
"PRON"
],
"tag": [
"PRP$"
],
"dep": "nmod:poss"
},
{
"txt": [
"discovery"
],
"lemma": [
"discovery"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "nmod"
},
{
"txt": [
"["
],
"lemma": [
"["
],
"pos": [
"PUNCT"
],
"tag": [
"-LRB-"
],
"dep": "punct"
},
{
"txt": [
"2"
],
"lemma": [
"2"
],
"pos": [
"NUM"
],
"tag": [
"CD"
],
"dep": "appos"
},
{
"txt": [
"]"
],
"lemma": [
"]"
],
"pos": [
"PUNCT"
],
"tag": [
"-RRB-"
],
"dep": "punct"
},
{
"txt": [
"."
],
"lemma": [
"."
],
"pos": [
"PUNCT"
],
"tag": [
"."
],
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
[
{
"@URI": "http://dbpedia.org/resource/Saccharomyces_cerevisiae",
"@support": "1227",
"@types": "",
"@surfaceForm": "S. cerevisiae",
"@offset": "0",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Eukaryote",
"@support": "4244",
"@types": "",
"@surfaceForm": "eukaryotic",
"@offset": "34",
"@similarityScore": "1.0",
"@percentageOfSecondRank": "0.0"
}
]
],
"ents": {
"name": [
"eukaryotic"
],
"strt": [
7
],
"umls": []
}
}
},
"nouns": [
"S. cerevisiae var. boulardii",
"a eukaryotic organism that has been used in scientific investigations since the time of its discovery [2]",
"a eukaryotic organism",
"scientific investigations",
"the time of its discovery",
"the time",
"its discovery",
"2"
],
"verbs": [
"is a eukaryotic organism that has been used in scientific investigations since the time of its discovery [2]",
"has been used in scientific investigations since the time of its discovery [2]",
"been used in scientific investigations since the time of its discovery [2]",
"used in scientific investigations since the time of its discovery [2]"
],
"relns": []
},
{
"text": "This model organism has unique importance because of its alterable and flexible genome.",
"spcy": {
"data": [
[
{
"strt": 3,
"enx": 4,
"txt": "has"
}
],
[
{
"strt": 3,
"enx": 4,
"txt": "has"
}
]
],
"wkd": [],
"nns": [
{
"strt": 1,
"txt": "model"
},
{
"strt": 2,
"txt": "organism"
},
{
"strt": 5,
"txt": "importance"
},
{
"strt": 12,
"txt": "genome"
}
],
"pnns": [],
"vrbs": [
{
"strt": 3,
"txt": "has"
}
],
"conj": [
{
"strt": 10,
"txt": "and"
}
],
"disj": [],
"noms": [],
"suchs": [],
"scispcy": {
"sentence": "This model organism has unique importance because of its alterable and flexible genome.",
"pos": [
{
"txt": [
"This"
],
"lemma": [
"this"
],
"pos": [
"DET"
],
"tag": [
"DT"
],
"dep": "det"
},
{
"txt": [
"model"
],
"lemma": [
"model"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "compound"
},
{
"txt": [
"organism"
],
"lemma": [
"organism"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "nsubj"
},
{
"txt": [
"has"
],
"lemma": [
"have"
],
"pos": [
"AUX"
],
"tag": [
"VBZ"
],
"dep": "ROOT"
},
{
"txt": [
"unique"
],
"lemma": [
"unique"
],
"pos": [
"ADJ"
],
"tag": [
"JJ"
],
"dep": "amod"
},
{
"txt": [
"importance"
],
"lemma": [
"importance"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "dobj"
},
{
"txt": [
"because"
],
"lemma": [
"because"
],
"pos": [
"SCONJ"
],
"tag": [
"IN"
],
"dep": "case"
},
{
"txt": [
"of"
],
"lemma": [
"of"
],
"pos": [
"ADP"
],
"tag": [
"IN"
],
"dep": "pcomp"
},
{
"txt": [
"its"
],
"lemma": [
"its"
],
"pos": [
"PRON"
],
"tag": [
"PRP$"
],
"dep": "nmod:poss"
},
{
"txt": [
"alterable"
],
"lemma": [
"alterable"
],
"pos": [
"ADJ"
],
"tag": [
"JJ"
],
"dep": "amod"
},
{
"txt": [
"and"
],
"lemma": [
"and"
],
"pos": [
"CCONJ"
],
"tag": [
"CC"
],
"dep": "cc"
},
{
"txt": [
"flexible"
],
"lemma": [
"flexible"
],
"pos": [
"ADJ"
],
"tag": [
"JJ"
],
"dep": "conj"
},
{
"txt": [
"genome"
],
"lemma": [
"genome"
],
"pos": [
"NOUN"
],
"tag": [
"NN"
],
"dep": "nmod"
},
{
"txt": [
"."
],
"lemma": [
"."
],
"pos": [
"PUNCT"
],
"tag": [
"."
],
"dep": "punct"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
[
{
"@URI": "http://dbpedia.org/resource/Model_organism",
"@support": "1713",
"@types": "",
"@surfaceForm": "model organism",
"@offset": "5",
"@similarityScore": "0.9999999999914024",
"@percentageOfSecondRank": "0.0"
},
{
"@URI": "http://dbpedia.org/resource/Genome",
"@support": "9658",
"@types": "",
"@surfaceForm": "genome",
"@offset": "80",
"@similarityScore": "0.999785480396316",
"@percentageOfSecondRank": "1.5198137085246374E-4"
}
]
],
"ents": {
"name": [
"genome"
],
"strt": [
12
],
"umls": [
{
"cid": [
"C0017428"
],
"canonical": [
"Genome"
],
"aliases": [
[
"Genome, NOS",
"Genome",
"Genomes",
"genomes",
"genome",
"Genomic",
"Genome (substance)"
]
],
"types": [
[
"T028"
]
],
"definition": "The genetic complement of an organism, including all of its GENES, as represented in its DNA, or in some cases, its RNA."
},
{
"cid": [
"C2338314"
],
"canonical": [
"Genome - anatomical entity"
],
"aliases": [
[
"Genome"
]
],
"types": [
[
"T077"
]
],
"definition": "Anatomical set of genes in all the chromosomes."
},
{
"cid": [
"C0242965"
],
"canonical": [
"Genome, Plant"
],
"aliases": [
[
"Plant genome",
"Plant Genomes",
"Plant genomes",
"Plant Genome",
"Genomes, Plant",
"Plant genome (substance)"
]
],
"types": [
[
"T028"
]
],
"definition": "The genetic complement of a plant (PLANTS) as represented in its DNA."
},
{
"cid": [
"C0042720"
],
"canonical": [
"Viral Genome"
],
"aliases": [
[
"Genomes, Viral",
"Viral Genomes",
"Genome, Viral",
"Viral genomes",
"Viral Genome",
"Viral genome (substance)",
"Viral genome"
]
],
"types": [
[
"T028"
]
],
"definition": "The complete genetic complement contained in a DNA or RNA molecule in a virus."
},
{
"cid": [
"C1517519"
],
"canonical": [
"Genome Scan"
],
"aliases": [
[]
],
"types": [
[
"T063"
]
],
"definition": "To analyse the entire genome (total genetic complement) of an individual, organism, cell or tissue."
}
]
}
}
},
"nouns": [
"This model organism",
"unique importance because of its alterable and flexible genome",
"unique importance",
"its alterable and flexible genome"
],
"verbs": [
"has unique importance because of its alterable and flexible genome"
],
"relns": []
},
{
"text": "\"}",
"spcy": {
"data": [
[],
[]
],
"wkd": [],
"nns": [],
"pnns": [],
"vrbs": [],
"conj": [],
"disj": [],
"noms": [],
"suchs": [],
"scispcy": {
"sentence": "\"}",
"pos": [
{
"txt": [
"\""
],
"lemma": [
"\""
],
"pos": [
"PUNCT"
],
"tag": [
"''"
],
"dep": "ROOT"
},
{
"txt": [
"}"
],
"lemma": [
"}"
],
"pos": [
"PUNCT"
],
"tag": [
"-RRB-"
],
"dep": "ROOT"
}
],
"hearst": [
[]
],
"abbrev": {},
"dbp": [
[]
],
"ents": {}
}
},
"nouns": [
"\"}"
],
"verbs": [],
"relns": []
}
]
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment