Created
November 24, 2020 08:13
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Gaussian Mixture plot in R
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library(ggplot2) | |
gg.mixEM <- function(EM) { | |
require(ggplot2) | |
x <- with(EM,seq(min(x)-1,max(x)+1,len=1000)) | |
pars <- with(EM,data.frame(comp=colnames(posterior), mu, sigma,lambda)) | |
em.df <- data.frame(x=rep(x,each=nrow(pars)),pars) | |
em.df$y <- with(em.df,lambda*dnorm(x,mean=mu,sd=sigma)) | |
ggplot(data.frame(x=EM$x),aes(x,y=..density..)) + | |
geom_histogram(fill=NA,color="black",bins=41)+ | |
geom_polygon(data=em.df,aes(x,y,fill=comp),color="grey50", alpha=0.5)+ | |
scale_fill_discrete("Component Means",labels=format(em.df$mu,digits=3))+ | |
theme_bw()+ | |
coord_cartesian(xlim = c(min(x)-1,max(x)), | |
expand = c(0,0)) | |
} | |
# Examples | |
ores = mixtools::normalmixEM(resolution_time_second, | |
k = 2, | |
#mean.constr = NULL, | |
#sd.constr = NULL, | |
#epsilon = 1e-15, | |
#maxit = 1000, | |
#maxrestarts=50, | |
#verb = TRUE, | |
fast=FALSE, | |
#ECM = FALSE, | |
#arbmean = TRUE, | |
#arbvar = TRUE | |
) | |
summary(ores) | |
gg.mixEM(ores) |
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