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Pulling more reference files from the GATK servers
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| #!/bin/bash | |
| cd /data/home/molvera/res | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/hg38/1000G_phase1.snps.high_confidence.hg38.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/hg38/1000G_phase1.snps.high_confidence.hg38.vcf.gz.tbi | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/hg38/Mills_and_1000G_gold_standard.indels.hg38.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/hg38/Mills_and_1000G_gold_standard.indels.hg38.vcf.gz.tbi | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/hg38/hapmap_3.3.hg38.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/hg38/hapmap_3.3.hg38.vcf.gz.tbi | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/hg38/dbsnp_146.hg38.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/hg38/dbsnp_146.hg38.vcf.gz.tbi | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/hg38/1000G_omni2.5.hg38.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/hg38/1000G_omni2.5.hg38.vcf.gz.tbi |
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