LouisFaure

import os, sys
os.environ['R_HOME'] = sys.exec_prefix+"/lib/R/"
import rpy2

LouisFaure

import mudatasets
import numpy as np
import pandas as pd
import scanpy as sc
import anndata as ad
import muon as mu

mdata = mudatasets.load("brain3k_multiome", full=True)
mdata.var_names_make_unique()

LouisFaure

import scanpy as sc
import cupy as cp
from scipy.sparse import csr_matrix, find, issparse
from scipy.sparse.linalg import eigs
import numpy as np
import pandas as pd
import cudf
import glob
from cupy.sparse import cupyx as cpx
from cupyx.scipy.sparse import coo_matrix as coo_matrix_gpu

LouisFaure

#!/usr/bin/env python
import sys
import warnings
warnings.filterwarnings("ignore")
import logging
import rpy2.robjects as robjects
from rpy2.robjects.packages import importr
from anndata2ri.scipy2ri._r2py import rmat_to_spmat
import anndata as ann
import pandas as pd