-
-
Save LukeGoodsell/06945acf30d35ebd6e2b82bb83e29bec to your computer and use it in GitHub Desktop.
storeDir seems to copy files
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
ATX-MC01:2017-08-08_nf_storedir lukegoodsell$ ls -la | |
total 16 | |
drwxr-xr-x 3 lukegoodsell staff 102 8 Aug 11:48 . | |
drwxr-xr-x 19 lukegoodsell staff 646 8 Aug 11:41 .. | |
-rwxr-xr-x 1 lukegoodsell staff 213 8 Aug 11:45 test.nf | |
ATX-MC01:2017-08-08_nf_storedir lukegoodsell$ cat test.nf | |
#!/usr/bin/env nextflow | |
process testProc { | |
storeDir "testProcOut" | |
output: | |
file "testProcFile.txt" into testProcFileChannel | |
shell: | |
''' | |
echo "hi" > testProcFile.txt | |
''' | |
} | |
testProcFileChannel.println() | |
ATX-MC01:2017-08-08_nf_storedir lukegoodsell$ ./test.nf | |
N E X T F L O W ~ version 0.24.4 | |
Launching `./test.nf` [modest_nightingale] - revision: fc3dfd3627 | |
[warm up] executor > local | |
[6a/afaebd] Submitted process > testProc | |
/Volumes/LG_01_WD3TB/tmp/2017-08-08_nf_storedir/testProcOut/testProcFile.txt | |
ATX-MC01:2017-08-08_nf_storedir lukegoodsell$ ./test.nf | |
N E X T F L O W ~ version 0.24.4 | |
Launching `./test.nf` [sick_nightingale] - revision: fc3dfd3627 | |
[warm up] executor > local | |
[skipping] Stored process > testProc | |
/Volumes/LG_01_WD3TB/tmp/2017-08-08_nf_storedir/testProcOut/testProcFile.txt | |
ATX-MC01:2017-08-08_nf_storedir lukegoodsell$ find ./ -iname testProcFile.txt | xargs realpath | sort -u | xargs gstat -c '%i %n' | |
11434461 /Volumes/LG_01_WD3TB/tmp/2017-08-08_nf_storedir/testProcOut/testProcFile.txt | |
11434459 /Volumes/LG_01_WD3TB/tmp/2017-08-08_nf_storedir/work/6a/afaebd123b34ba2bcd541190ade8d9/testProcFile.txt |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment