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http-dx-doi-org10-7265n5028pfh.ipynb
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| { | |
| "cells": [ | |
| { | |
| "cell_type": "markdown", | |
| "metadata": { | |
| "id": "view-in-github", | |
| "colab_type": "text" | |
| }, | |
| "source": [ | |
| "<a href=\"https://colab.research.google.com/gist/MBcode/de9b43e4e3c18bedb60c96dfa58c182b/http-dx-doi-org10-7265n5028pfh.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": null, | |
| "id": "b971a49b", | |
| "metadata": { | |
| "papermill": {}, | |
| "tags": [ | |
| "parameters" | |
| ], | |
| "id": "b971a49b" | |
| }, | |
| "outputs": [], | |
| "source": [ | |
| "#github.com/nteract/papermill'parameters'tag used to inject them into template then post a gist runable by colab\n", | |
| "url,ext,urn=None,None,None\n", | |
| "%load_ext rpy2.ipython\n", | |
| "%load_ext google.colab.data_table\n", | |
| "import httpimport\n", | |
| "with httpimport.github_repo('MBcode', 'ec'):\n", | |
| " import ec\n" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": null, | |
| "id": "7b716741", | |
| "metadata": { | |
| "tags": [ | |
| "injected-parameters" | |
| ], | |
| "id": "7b716741" | |
| }, | |
| "outputs": [], | |
| "source": [ | |
| "# Parameters\n", | |
| "url = \"http://dx.doi.org/10.7265/N5028PFH\"\n", | |
| "ext = \"\"\n", | |
| "urn = \"urn:gleaner:summoned:iedadata:c63f6353260af5e5be4d9366088ead3cb0dd6e52\"\n", | |
| "q = None\n" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": null, | |
| "id": "a8b59a0b", | |
| "metadata": { | |
| "papermill": {}, | |
| "tags": [], | |
| "id": "a8b59a0b", | |
| "outputId": "1a049e13-c8d1-45d3-a45a-97857db8346a", | |
| "colab": { | |
| "base_uri": "https://localhost:8080/", | |
| "height": 783 | |
| } | |
| }, | |
| "outputs": [ | |
| { | |
| "output_type": "error", | |
| "ename": "ConnectionError", | |
| "evalue": "ignored", | |
| "traceback": [ | |
| "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", | |
| "\u001b[0;31mOSError\u001b[0m Traceback (most recent call last)", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/urllib3/connection.py\u001b[0m in \u001b[0;36m_new_conn\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 158\u001b[0m conn = connection.create_connection(\n\u001b[0;32m--> 159\u001b[0;31m (self._dns_host, self.port), self.timeout, **extra_kw)\n\u001b[0m\u001b[1;32m 160\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/urllib3/util/connection.py\u001b[0m in \u001b[0;36mcreate_connection\u001b[0;34m(address, timeout, source_address, socket_options)\u001b[0m\n\u001b[1;32m 79\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0merr\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0;32mNone\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 80\u001b[0;31m \u001b[0;32mraise\u001b[0m \u001b[0merr\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 81\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/urllib3/util/connection.py\u001b[0m in \u001b[0;36mcreate_connection\u001b[0;34m(address, timeout, source_address, socket_options)\u001b[0m\n\u001b[1;32m 69\u001b[0m \u001b[0msock\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mbind\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0msource_address\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 70\u001b[0;31m \u001b[0msock\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mconnect\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0msa\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 71\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0msock\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;31mOSError\u001b[0m: [Errno 113] No route to host", | |
| "\nDuring handling of the above exception, another exception occurred:\n", | |
| "\u001b[0;31mNewConnectionError\u001b[0m Traceback (most recent call last)", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/urllib3/connectionpool.py\u001b[0m in \u001b[0;36murlopen\u001b[0;34m(self, method, url, body, headers, retries, redirect, assert_same_host, timeout, pool_timeout, release_conn, chunked, body_pos, **response_kw)\u001b[0m\n\u001b[1;32m 599\u001b[0m \u001b[0mbody\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mbody\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mheaders\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mheaders\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 600\u001b[0;31m chunked=chunked)\n\u001b[0m\u001b[1;32m 601\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/urllib3/connectionpool.py\u001b[0m in \u001b[0;36m_make_request\u001b[0;34m(self, conn, method, url, timeout, chunked, **httplib_request_kw)\u001b[0m\n\u001b[1;32m 353\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 354\u001b[0;31m \u001b[0mconn\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mrequest\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mmethod\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0murl\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mhttplib_request_kw\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 355\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/lib/python3.7/http/client.py\u001b[0m in \u001b[0;36mrequest\u001b[0;34m(self, method, url, body, headers, encode_chunked)\u001b[0m\n\u001b[1;32m 1280\u001b[0m \u001b[0;34m\"\"\"Send a complete request to the server.\"\"\"\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1281\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_send_request\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mmethod\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0murl\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mbody\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mheaders\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mencode_chunked\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1282\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/lib/python3.7/http/client.py\u001b[0m in \u001b[0;36m_send_request\u001b[0;34m(self, method, url, body, headers, encode_chunked)\u001b[0m\n\u001b[1;32m 1326\u001b[0m \u001b[0mbody\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0m_encode\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mbody\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'body'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1327\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mendheaders\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mbody\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mencode_chunked\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mencode_chunked\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1328\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/lib/python3.7/http/client.py\u001b[0m in \u001b[0;36mendheaders\u001b[0;34m(self, message_body, encode_chunked)\u001b[0m\n\u001b[1;32m 1275\u001b[0m \u001b[0;32mraise\u001b[0m \u001b[0mCannotSendHeader\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1276\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_send_output\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mmessage_body\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mencode_chunked\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mencode_chunked\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1277\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/lib/python3.7/http/client.py\u001b[0m in \u001b[0;36m_send_output\u001b[0;34m(self, message_body, encode_chunked)\u001b[0m\n\u001b[1;32m 1035\u001b[0m \u001b[0;32mdel\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_buffer\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1036\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msend\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mmsg\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1037\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/lib/python3.7/http/client.py\u001b[0m in \u001b[0;36msend\u001b[0;34m(self, data)\u001b[0m\n\u001b[1;32m 975\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mauto_open\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 976\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mconnect\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 977\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/urllib3/connection.py\u001b[0m in \u001b[0;36mconnect\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 180\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0mconnect\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 181\u001b[0;31m \u001b[0mconn\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_new_conn\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 182\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_prepare_conn\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mconn\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/urllib3/connection.py\u001b[0m in \u001b[0;36m_new_conn\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 167\u001b[0m raise NewConnectionError(\n\u001b[0;32m--> 168\u001b[0;31m self, \"Failed to establish a new connection: %s\" % e)\n\u001b[0m\u001b[1;32m 169\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;31mNewConnectionError\u001b[0m: <urllib3.connection.HTTPConnection object at 0x7f6784949f90>: Failed to establish a new connection: [Errno 113] No route to host", | |
| "\nDuring handling of the above exception, another exception occurred:\n", | |
| "\u001b[0;31mMaxRetryError\u001b[0m Traceback (most recent call last)", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/requests/adapters.py\u001b[0m in \u001b[0;36msend\u001b[0;34m(self, request, stream, timeout, verify, cert, proxies)\u001b[0m\n\u001b[1;32m 448\u001b[0m \u001b[0mretries\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mmax_retries\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 449\u001b[0;31m \u001b[0mtimeout\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mtimeout\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 450\u001b[0m )\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/urllib3/connectionpool.py\u001b[0m in \u001b[0;36murlopen\u001b[0;34m(self, method, url, body, headers, retries, redirect, assert_same_host, timeout, pool_timeout, release_conn, chunked, body_pos, **response_kw)\u001b[0m\n\u001b[1;32m 637\u001b[0m retries = retries.increment(method, url, error=e, _pool=self,\n\u001b[0;32m--> 638\u001b[0;31m _stacktrace=sys.exc_info()[2])\n\u001b[0m\u001b[1;32m 639\u001b[0m \u001b[0mretries\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msleep\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/urllib3/util/retry.py\u001b[0m in \u001b[0;36mincrement\u001b[0;34m(self, method, url, response, error, _pool, _stacktrace)\u001b[0m\n\u001b[1;32m 398\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mnew_retry\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mis_exhausted\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 399\u001b[0;31m \u001b[0;32mraise\u001b[0m \u001b[0mMaxRetryError\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0m_pool\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0murl\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0merror\u001b[0m \u001b[0;32mor\u001b[0m \u001b[0mResponseError\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mcause\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 400\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;31mMaxRetryError\u001b[0m: HTTPConnectionPool(host='141.142.218.86', port=3031): Max retries exceeded with url: /logbad/?url=[Warn:No%20File] (Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at 0x7f6784949f90>: Failed to establish a new connection: [Errno 113] No route to host'))", | |
| "\nDuring handling of the above exception, another exception occurred:\n", | |
| "\u001b[0;31mConnectionError\u001b[0m Traceback (most recent call last)", | |
| "\u001b[0;32m<ipython-input-4-c7191d3217bc>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[0mrdf\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mec\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mwget_rdf\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0murn\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2\u001b[0m \u001b[0;31m#!ls -l or FilePaneBrowser on left, to see it\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 3\u001b[0;31m \u001b[0mdf\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mec\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mread_file\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0murl\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0mext\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 4\u001b[0m \u001b[0mdf\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32mhttps://raw.githubusercontent.com/MBcode/ec/master//ec.py\u001b[0m in \u001b[0;36mread_file\u001b[0;34m(fnp, ext)\u001b[0m\n", | |
| "\u001b[0;32mhttps://raw.githubusercontent.com/MBcode/ec/master//ec.py\u001b[0m in \u001b[0;36mcheck_size\u001b[0;34m(fs, df)\u001b[0m\n", | |
| "\u001b[0;32mhttps://raw.githubusercontent.com/MBcode/ec/master//ec.py\u001b[0m in \u001b[0;36mlog_msg\u001b[0;34m(url)\u001b[0m\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/requests/api.py\u001b[0m in \u001b[0;36mget\u001b[0;34m(url, params, **kwargs)\u001b[0m\n\u001b[1;32m 74\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 75\u001b[0m \u001b[0mkwargs\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msetdefault\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'allow_redirects'\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;32mTrue\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 76\u001b[0;31m \u001b[0;32mreturn\u001b[0m \u001b[0mrequest\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'get'\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0murl\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mparams\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mparams\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 77\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 78\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/requests/api.py\u001b[0m in \u001b[0;36mrequest\u001b[0;34m(method, url, **kwargs)\u001b[0m\n\u001b[1;32m 59\u001b[0m \u001b[0;31m# cases, and look like a memory leak in others.\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 60\u001b[0m \u001b[0;32mwith\u001b[0m \u001b[0msessions\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mSession\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;32mas\u001b[0m \u001b[0msession\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 61\u001b[0;31m \u001b[0;32mreturn\u001b[0m \u001b[0msession\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mrequest\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mmethod\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mmethod\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0murl\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0murl\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 62\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 63\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/requests/sessions.py\u001b[0m in \u001b[0;36mrequest\u001b[0;34m(self, method, url, params, data, headers, cookies, files, auth, timeout, allow_redirects, proxies, hooks, stream, verify, cert, json)\u001b[0m\n\u001b[1;32m 528\u001b[0m }\n\u001b[1;32m 529\u001b[0m \u001b[0msend_kwargs\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mupdate\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0msettings\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 530\u001b[0;31m \u001b[0mresp\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msend\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mprep\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0msend_kwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 531\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 532\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mresp\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/requests/sessions.py\u001b[0m in \u001b[0;36msend\u001b[0;34m(self, request, **kwargs)\u001b[0m\n\u001b[1;32m 641\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 642\u001b[0m \u001b[0;31m# Send the request\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 643\u001b[0;31m \u001b[0mr\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0madapter\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msend\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mrequest\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 644\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 645\u001b[0m \u001b[0;31m# Total elapsed time of the request (approximately)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;32m/usr/local/lib/python3.7/dist-packages/requests/adapters.py\u001b[0m in \u001b[0;36msend\u001b[0;34m(self, request, stream, timeout, verify, cert, proxies)\u001b[0m\n\u001b[1;32m 514\u001b[0m \u001b[0;32mraise\u001b[0m \u001b[0mSSLError\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0me\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mrequest\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mrequest\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 515\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 516\u001b[0;31m \u001b[0;32mraise\u001b[0m \u001b[0mConnectionError\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0me\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mrequest\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mrequest\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 517\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 518\u001b[0m \u001b[0;32mexcept\u001b[0m \u001b[0mClosedPoolError\u001b[0m \u001b[0;32mas\u001b[0m \u001b[0me\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", | |
| "\u001b[0;31mConnectionError\u001b[0m: HTTPConnectionPool(host='141.142.218.86', port=3031): Max retries exceeded with url: /logbad/?url=[Warn:No%20File] (Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at 0x7f6784949f90>: Failed to establish a new connection: [Errno 113] No route to host'))" | |
| ] | |
| } | |
| ], | |
| "source": [ | |
| "rdf=ec.wget_rdf(urn)\n", | |
| "#!ls -l or FilePaneBrowser on left, to see it\n", | |
| "df=ec.read_file(url,ext)\n", | |
| "df" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "source": [ | |
| "rdf" | |
| ], | |
| "metadata": { | |
| "id": "tssLiZKJ-a8W", | |
| "outputId": "531fd7fe-fd88-40ae-cbcf-df2915e6df64", | |
| "colab": { | |
| "base_uri": "https://localhost:8080/", | |
| "height": 769 | |
| } | |
| }, | |
| "id": "tssLiZKJ-a8W", | |
| "execution_count": null, | |
| "outputs": [ | |
| { | |
| "output_type": "execute_result", | |
| "data": { | |
| "text/plain": [ | |
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| " <tr>\n", | |
| " <th>1</th>\n", | |
| " <td>doi:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/additionalType</td>\n", | |
| " <td>http://schema.geolink.org/1.0/base/main#Identi...</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>2</th>\n", | |
| " <td>doi:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/propertyID</td>\n", | |
| " <td>http://purl.org/spar/datacite/doi</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>3</th>\n", | |
| " <td>doi:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/url</td>\n", | |
| " <td>http://dx.doi.org/10.7265/N5028PFH</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>4</th>\n", | |
| " <td>doi:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/value</td>\n", | |
| " <td>10.7265/N5028PFH</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>5</th>\n", | |
| " <td>doi:10.7265/N5028PFH</td>\n", | |
| " <td>http://www.w3.org/1999/02/22-rdf-syntax-ns#type</td>\n", | |
| " <td>https://schema.org/PropertyValue</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>6</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/additionalType</td>\n", | |
| " <td>http://schema.geolink.org/1.0/base/main#Dataset</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>7</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/additionalType</td>\n", | |
| " <td>http://vivoweb.org/ontology/core#Dataset</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>8</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/citation</td>\n", | |
| " <td>Engelhardt, Hermann (2013), Videos of Basal Ic...</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>9</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/description</td>\n", | |
| " <td>Abstract: This data set is a collection of vid...</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>10</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/identifier</td>\n", | |
| " <td>doi:10.7265/N5028PFH</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>11</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/keywords</td>\n", | |
| " <td>Antarctica</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>12</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/keywords</td>\n", | |
| " <td>Antarctic Glaciology</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>13</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/keywords</td>\n", | |
| " <td>Cryosphere</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>14</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/keywords</td>\n", | |
| " <td>Glaciers/Ice Sheet</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>15</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/keywords</td>\n", | |
| " <td>Glaciology</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>16</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/keywords</td>\n", | |
| " <td>Photo/Video</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>17</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/keywords</td>\n", | |
| " <td>Kamb Ice Stream</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>18</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/keywords</td>\n", | |
| " <td>Borehole Video</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>19</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/license</td>\n", | |
| " <td>Creative Commons Attribution-NonCommercial-Sha...</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>20</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/name</td>\n", | |
| " <td>Videos of Basal Ice in Boreholes on the Kamb I...</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>21</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/publisher</td>\n", | |
| " <td>t1902402</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>22</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/spatialCoverage</td>\n", | |
| " <td>t1902403</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>23</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/spatialCoverage</td>\n", | |
| " <td>t1902404</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>24</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/version</td>\n", | |
| " <td>1</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>25</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/creator</td>\n", | |
| " <td>t1902398</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>26</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/datePublished</td>\n", | |
| " <td>2013</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>27</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/distribution</td>\n", | |
| " <td>t1902399</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>28</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/distribution</td>\n", | |
| " <td>t1902400</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>29</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/inLanguage</td>\n", | |
| " <td>eng</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>30</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>https://schema.org/provider</td>\n", | |
| " <td>t1902401</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>31</th>\n", | |
| " <td>DOI:10.7265/N5028PFH</td>\n", | |
| " <td>http://www.w3.org/1999/02/22-rdf-syntax-ns#type</td>\n", | |
| " <td>https://schema.org/Dataset</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>32</th>\n", | |
| " <td>t1902398</td>\n", | |
| " <td>https://schema.org/additionalType</td>\n", | |
| " <td>http://schema.geolink.org/1.0/base/main#Person</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>33</th>\n", | |
| " <td>t1902398</td>\n", | |
| " <td>https://schema.org/name</td>\n", | |
| " <td>Engelhardt, Hermann</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>34</th>\n", | |
| " <td>t1902398</td>\n", | |
| " <td>https://schema.org/familyName</td>\n", | |
| " <td>Engelhardt</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>35</th>\n", | |
| " <td>t1902398</td>\n", | |
| " <td>https://schema.org/givenName</td>\n", | |
| " <td>Hermann</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>36</th>\n", | |
| " <td>t1902398</td>\n", | |
| " <td>http://www.w3.org/1999/02/22-rdf-syntax-ns#type</td>\n", | |
| " <td>https://schema.org/Person</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>37</th>\n", | |
| " <td>t1902399</td>\n", | |
| " <td>https://schema.org/additionalType</td>\n", | |
| " <td>http://www.w3.org/ns/dcat#distribution</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>38</th>\n", | |
| " <td>t1902399</td>\n", | |
| " <td>https://schema.org/name</td>\n", | |
| " <td>DOI landing page</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>39</th>\n", | |
| " <td>t1902399</td>\n", | |
| " <td>https://schema.org/url</td>\n", | |
| " <td>http://dx.doi.org/10.7265/N5028PFH</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>40</th>\n", | |
| " <td>t1902399</td>\n", | |
| " <td>http://www.w3.org/ns/dcat#accessURL</td>\n", | |
| " <td>http://dx.doi.org/10.7265/N5028PFH</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>41</th>\n", | |
| " <td>t1902399</td>\n", | |
| " <td>http://www.w3.org/1999/02/22-rdf-syntax-ns#type</td>\n", | |
| " <td>https://schema.org/DataDownload</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>42</th>\n", | |
| " <td>t1902400</td>\n", | |
| " <td>https://schema.org/additionalType</td>\n", | |
| " <td>http://www.w3.org/ns/dcat#distribution</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>43</th>\n", | |
| " <td>t1902400</td>\n", | |
| " <td>https://schema.org/name</td>\n", | |
| " <td>landing page</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>44</th>\n", | |
| " <td>t1902400</td>\n", | |
| " <td>https://schema.org/url</td>\n", | |
| " <td>http://www.usap-dc.org/view/dataset/609528</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>45</th>\n", | |
| " <td>t1902400</td>\n", | |
| " <td>http://www.w3.org/ns/dcat#accessURL</td>\n", | |
| " <td>http://www.usap-dc.org/view/dataset/609528</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>46</th>\n", | |
| " <td>t1902400</td>\n", | |
| " <td>http://www.w3.org/1999/02/22-rdf-syntax-ns#type</td>\n", | |
| " <td>https://schema.org/DataDownload</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>47</th>\n", | |
| " <td>t1902401</td>\n", | |
| " <td>https://schema.org/name</td>\n", | |
| " <td>U.S. Antarctic Program (USAP) Data Center</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>48</th>\n", | |
| " <td>t1902401</td>\n", | |
| " <td>http://www.w3.org/1999/02/22-rdf-syntax-ns#type</td>\n", | |
| " <td>https://schema.org/Organization</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>49</th>\n", | |
| " <td>t1902402</td>\n", | |
| " <td>https://schema.org/name</td>\n", | |
| " <td>U.S. Antarctic Program (USAP) Data Center</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>50</th>\n", | |
| " <td>t1902402</td>\n", | |
| " <td>http://www.w3.org/1999/02/22-rdf-syntax-ns#type</td>\n", | |
| " <td>https://schema.org/Organization</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>51</th>\n", | |
| " <td>t1902403</td>\n", | |
| " <td>https://schema.org/name</td>\n", | |
| " <td>Kamb Ice Stream</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>52</th>\n", | |
| " <td>t1902403</td>\n", | |
| " <td>http://www.w3.org/1999/02/22-rdf-syntax-ns#type</td>\n", | |
| " <td>https://schema.org/Place</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>53</th>\n", | |
| " <td>t1902404</td>\n", | |
| " <td>https://schema.org/geo</td>\n", | |
| " <td>t1902405</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>54</th>\n", | |
| " <td>t1902404</td>\n", | |
| " <td>http://www.w3.org/1999/02/22-rdf-syntax-ns#type</td>\n", | |
| " <td>https://schema.org/Place</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>55</th>\n", | |
| " <td>t1902405</td>\n", | |
| " <td>https://schema.org/latitude</td>\n", | |
| " <td>-82.39955</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>56</th>\n", | |
| " <td>t1902405</td>\n", | |
| " <td>https://schema.org/longitude</td>\n", | |
| " <td>-136.404633</td>\n", | |
| " </tr>\n", | |
| " <tr>\n", | |
| " <th>57</th>\n", | |
| " <td>t1902405</td>\n", | |
| " <td>http://www.w3.org/1999/02/22-rdf-syntax-ns#type</td>\n", | |
| " <td>https://schema.org/GeoCoordinates</td>\n", | |
| " </tr>\n", | |
| " </tbody>\n", | |
| "</table>\n", | |
| "</div>\n", | |
| " <button class=\"colab-df-convert\" onclick=\"convertToInteractive('df-a1aa4a40-7426-4366-9c81-c1c6998ec564')\"\n", | |
| " title=\"Convert this dataframe to an interactive table.\"\n", | |
| " style=\"display:none;\">\n", | |
| " \n", | |
| " <svg xmlns=\"http://www.w3.org/2000/svg\" height=\"24px\"viewBox=\"0 0 24 24\"\n", | |
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| " \n", | |
| " <style>\n", | |
| " .colab-df-container {\n", | |
| " display:flex;\n", | |
| " flex-wrap:wrap;\n", | |
| " gap: 12px;\n", | |
| " }\n", | |
| "\n", | |
| " .colab-df-convert {\n", | |
| " background-color: #E8F0FE;\n", | |
| " border: none;\n", | |
| " border-radius: 50%;\n", | |
| " cursor: pointer;\n", | |
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| " height: 32px;\n", | |
| " padding: 0 0 0 0;\n", | |
| " width: 32px;\n", | |
| " }\n", | |
| "\n", | |
| " .colab-df-convert:hover {\n", | |
| " background-color: #E2EBFA;\n", | |
| " box-shadow: 0px 1px 2px rgba(60, 64, 67, 0.3), 0px 1px 3px 1px rgba(60, 64, 67, 0.15);\n", | |
| " fill: #174EA6;\n", | |
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| "\n", | |
| " [theme=dark] .colab-df-convert {\n", | |
| " background-color: #3B4455;\n", | |
| " fill: #D2E3FC;\n", | |
| " }\n", | |
| "\n", | |
| " [theme=dark] .colab-df-convert:hover {\n", | |
| " background-color: #434B5C;\n", | |
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| " filter: drop-shadow(0px 1px 2px rgba(0, 0, 0, 0.3));\n", | |
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| " const docLinkHtml = 'Like what you see? Visit the ' +\n", | |
| " '<a target=\"_blank\" href=https://colab.research.google.com/notebooks/data_table.ipynb>data table notebook</a>'\n", | |
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| }, | |
| "metadata": {}, | |
| "execution_count": 6 | |
| } | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": null, | |
| "id": "d66ee3dc", | |
| "metadata": { | |
| "papermill": {}, | |
| "tags": [], | |
| "id": "d66ee3dc", | |
| "outputId": "c64d14d5-35ee-4645-ba68-4f47efe302f3", | |
| "colab": { | |
| "base_uri": "https://localhost:8080/" | |
| } | |
| }, | |
| "outputs": [ | |
| { | |
| "output_type": "stream", | |
| "name": "stdout", | |
| "text": [ | |
| "total 136\n", | |
| "drwxr-xr-x 1 root root 4096 Nov 8 20:40 .\n", | |
| "drwxr-xr-x 1 root root 4096 Nov 8 20:38 ..\n", | |
| "-rw-r--r-- 1 root root 5835 Nov 8 20:40 .all.nt\n", | |
| "-rw-r--r-- 1 root root 11670 Nov 8 20:40 c63f6353260af5e5be4d9366088ead3cb0dd6e52.nt\n", | |
| "drwxr-xr-x 4 root root 4096 Nov 7 14:36 .config\n", | |
| "-rw-r--r-- 1 root root 7608 Nov 8 20:40 log\n", | |
| "-rw-r--r-- 1 root root 43092 Nov 8 20:40 N5028PFH\n", | |
| "-rw-r--r-- 1 root root 43092 Nov 8 20:40 N5028PFH.1\n", | |
| "drwxr-xr-x 1 root root 4096 Nov 7 14:37 sample_data\n", | |
| "-rw-r--r-- 1 root root 2244 Nov 8 20:40 sparql-query.txt\n" | |
| ] | |
| } | |
| ], | |
| "source": [ | |
| "!ls -la " | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": null, | |
| "id": "a0f5a72b", | |
| "metadata": { | |
| "papermill": {}, | |
| "tags": [], | |
| "id": "a0f5a72b", | |
| "outputId": "a3cecd7c-81b7-4c05-f657-35e4bfe14e92", | |
| "colab": { | |
| "base_uri": "https://localhost:8080/", | |
| "height": 1000 | |
| } | |
| }, | |
| "outputs": [ | |
| { | |
| "output_type": "display_data", | |
| "data": { | |
| "text/plain": [ | |
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| }, | |
| "metadata": {} | |
| } | |
| ], | |
| "source": [ | |
| "ec.viz() #shows .nt metadata from urn, can use for (rdf)xml as well " | |
| ] | |
| } | |
| ], | |
| "metadata": { | |
| "celltoolbar": "Tags", | |
| "kernelspec": { | |
| "display_name": "Python 3", | |
| "language": "python", | |
| "name": "python3" | |
| }, | |
| "language_info": { | |
| "codemirror_mode": { | |
| "name": "ipython", | |
| "version": 3 | |
| }, | |
| "file_extension": ".py", | |
| "mimetype": "text/x-python", | |
| "name": "python", | |
| "nbconvert_exporter": "python", | |
| "pygments_lexer": "ipython3", | |
| "version": "3.8.10" | |
| }, | |
| "papermill": { | |
| "default_parameters": {}, | |
| "environment_variables": {}, | |
| "input_path": "/app/templates/template.ipynb", | |
| "output_path": "/tmp/http:dx.doi.org10.7265N5028PFH.ipynb", | |
| "parameters": { | |
| "ext": "", | |
| "q": null, | |
| "url": "http://dx.doi.org/10.7265/N5028PFH", | |
| "urn": "urn:gleaner:summoned:iedadata:c63f6353260af5e5be4d9366088ead3cb0dd6e52" | |
| }, | |
| "version": "2.4.0" | |
| }, | |
| "colab": { | |
| "provenance": [], | |
| "include_colab_link": true | |
| } | |
| }, | |
| "nbformat": 4, | |
| "nbformat_minor": 5 | |
| } |
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