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June 9, 2017 08:11
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| Failed ------------------------------------------------------------------------- | |
| 1. Error: gapply() and gapplyCollect() on a DataFrame (@test_sparkSQL.R#2853) -- | |
| org.apache.spark.SparkException: Job aborted due to stage failure: Task 40 in stage 985.0 failed 1 times, most recent failure: Lost task 40.0 in stage 985.0 (TID 13694, localhost, executor driver): org.apache.spark.SparkException: R computation failed with | |
| [1] 2 | |
| [1] 1 | |
| [1] 3 | |
| [1] 2 | |
| [1] 1 | |
| [1] 3 | |
| [1] 2[1] | |
| 2 | |
| [1] 2 | |
| [1] 2 | |
| [1] 2 | |
| [1] 2 | |
| ignoring SIGPIPE signal | |
| ignoring SIGPIPE signal | |
| at org.apache.spark.api.r.RRunner.compute(RRunner.scala:108) | |
| at org.apache.spark.sql.execution.FlatMapGroupsInRExec$$anonfun$13.apply(objects.scala:432) | |
| at org.apache.spark.sql.execution.FlatMapGroupsInRExec$$anonfun$13.apply(objects.scala:414) | |
| at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:827) | |
| at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:827) | |
| at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) | |
| at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323) | |
| at org.apache.spark.rdd.RDD.iterator(RDD.scala:287) | |
| at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) | |
| at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323) | |
| at org.apache.spark.rdd.RDD.iterator(RDD.scala:287) | |
| at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) | |
| at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323) | |
| at org.apache.spark.rdd.RDD.iterator(RDD.scala:287) | |
| at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) | |
| at org.apache.spark.scheduler.Task.run(Task.scala:108) | |
| at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) | |
| at java.lang.Thread.run(Thread.java:745) | |
| Driver stacktrace: | |
| at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1499) | |
| at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1487) | |
| at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1486) | |
| at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) | |
| at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48) | |
| at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1486) | |
| at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814) | |
| at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814) | |
| at scala.Option.foreach(Option.scala:257) | |
| at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:814) | |
| at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1714) | |
| at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1669) | |
| at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1658) | |
| at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48) | |
| at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:630) | |
| at org.apache.spark.SparkContext.runJob(SparkContext.scala:2022) | |
| at org.apache.spark.SparkContext.runJob(SparkContext.scala:2043) | |
| at org.apache.spark.SparkContext.runJob(SparkContext.scala:2062) | |
| at org.apache.spark.SparkContext.runJob(SparkContext.scala:2087) | |
| at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:936) | |
| at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) | |
| at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112) | |
| at org.apache.spark.rdd.RDD.withScope(RDD.scala:362) | |
| at org.apache.spark.rdd.RDD.collect(RDD.scala:935) | |
| at org.apache.spark.sql.execution.SparkPlan.executeCollect(SparkPlan.scala:278) | |
| at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collectFromPlan(Dataset.scala:2851) | |
| at org.apache.spark.sql.Dataset$$anonfun$collect$1.apply(Dataset.scala:2388) | |
| at org.apache.spark.sql.Dataset$$anonfun$collect$1.apply(Dataset.scala:2388) | |
| at org.apache.spark.sql.Dataset$$anonfun$55.apply(Dataset.scala:2835) | |
| at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:65) | |
| at org.apache.spark.sql.Dataset.withAction(Dataset.scala:2834) | |
| at org.apache.spark.sql.Dataset.collect(Dataset.scala:2388) | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| at java.lang.reflect.Method.invoke(Method.java:498) | |
| at org.apache.spark.api.r.RBackendHandler.handleMethodCall(RBackendHandler.scala:167) | |
| at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:108) | |
| at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:40) | |
| at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105) | |
| at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) | |
| at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) | |
| at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336) | |
| at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1294) | |
| at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357) | |
| at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343) | |
| at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:911) | |
| at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131) | |
| at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:643) | |
| at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:566) | |
| at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480) | |
| at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442) | |
| at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131) | |
| at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144) | |
| at java.lang.Thread.run(Thread.java:745) | |
| Caused by: org.apache.spark.SparkException: R computation failed with | |
| [1] 2 | |
| [1] 1 | |
| [1] 3 | |
| [1] 2 | |
| [1] 1 | |
| [1] 3 | |
| [1] 2[1] | |
| 2 | |
| [1] 2 | |
| [1] 2 | |
| [1] 2 | |
| [1] 2 | |
| ignoring SIGPIPE signal | |
| ignoring SIGPIPE signal | |
| at | |
| 1: gapplyCollect(df, c("a", "c"), function(key, x) { | |
| y <- data.frame(key, mean(x$b), stringsAsFactors = FALSE) | |
| colnames(y) <- c("a", "c", "avg") | |
| y | |
| }) at /home/npentreath/spark-2.2.0/R/lib/SparkR/tests/testthat/test_sparkSQL.R:2853 | |
| 2: gapplyCollect(df, c("a", "c"), function(key, x) { | |
| y <- data.frame(key, mean(x$b), stringsAsFactors = FALSE) | |
| colnames(y) <- c("a", "c", "avg") | |
| y | |
| }) | |
| 3: .local(x, ...) | |
| 4: gapplyCollect(grouped, func) | |
| 5: gapplyCollect(grouped, func) | |
| 6: .local(x, ...) | |
| 7: callJMethod(gdf@sdf, "collect") | |
| 8: invokeJava(isStatic = FALSE, objId$id, methodName, ...) | |
| 9: handleErrors(returnStatus, conn) | |
| 10: stop(readString(conn)) | |
| DONE =========================================================================== | |
| Error: Test failures |
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