conda environments bits

conda.txt

conda environments

export PATH="/gpfs0/export/apps/easybuild/software/Miniconda3/4.7.10/bin:$PATH"

Package from: https://github.com/PacificBiosciences/pbbioconda

conda create -n isoseq python=2.7

eval "$(conda shell.bash hook)"

conda activate isoseq

conda install -n isoseq -c bioconda isoseq
conda install -n isoseq -c bioconda lima

isoseq3 --help

# Tell conda not to automatically turn itself on!
conda config --set auto_activate_base false

# Use a conda environment inside of a sbatch file
ml load Miniconda3/4.9.2
eval "$(conda shell.bash hook)"
conda activate conda_env_name_here_yo