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October 8, 2023 01:26
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| #mpa_vOct22_CHOCOPhlAnSGB_202212 | |
| #/usr/local/bin/metaphlan --nproc 6 --input_type fastq 2612.merged.fastq.gz --bowtie2out 2612_se_metaphlan4-db.metaphlan.bowtie2out.txt --bowtie2db metaphlan4 --index mpa_vOct22_CHOCOPhlAnSGB_202212 --biom 2612_se_metaphlan4-db.metaphlan.biom --output_file 2612_se_metaphlan4-db.metaphlan_profile.txt | |
| #707440 reads processed | |
| #SampleID Metaphlan_Analysis | |
| #clade_name NCBI_tax_id relative_abundance additional_species | |
| k__Bacteria 2 89.92809 | |
| k__Archaea 2157 10.07191 | |
| k__Bacteria|p__Bacteroidetes 2|976 31.03622 | |
| k__Bacteria|p__Actinobacteria 2|201174 29.64669 | |
| k__Bacteria|p__Firmicutes 2|1239 27.90168 | |
| k__Archaea|p__Euryarchaeota 2157|28890 10.07191 | |
| k__Bacteria|p__Tenericutes 2|544448 0.89337 | |
| k__Bacteria|p__Proteobacteria 2|1224 0.45012 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia 2|201174|84998 24.95068 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia 2|976|200643 21.42393 | |
| k__Bacteria|p__Firmicutes|c__Clostridia 2|1239|186801 20.1462 | |
| k__Archaea|p__Euryarchaeota|c__Methanobacteria 2157|28890|183925 9.93281 | |
| k__Bacteria|p__Actinobacteria|c__Actinomycetia 2|201174|1760 4.69601 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB658 2|976| 4.00689 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB11479 2|976| 3.29352 | |
| k__Bacteria|p__Firmicutes|c__CFGB9120 2|1239| 2.26587 | |
| k__Bacteria|p__Firmicutes|c__Firmicutes_unclassified 2|1239| 1.82756 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB629 2|976| 1.1017 | |
| k__Bacteria|p__Proteobacteria|c__CFGB544 2|1224| 1.08346 | |
| k__Bacteria|p__Firmicutes|c__CFGB10312 2|1239| 1.03757 | |
| k__Bacteria|p__Firmicutes|c__CFGB31455 2|1239| 0.94711 | |
| k__Bacteria|p__Firmicutes|c__Bacilli 2|1239|91061 0.90652 | |
| k__Bacteria|p__Tenericutes|c__CFGB343 2|544448| 0.89337 | |
| k__Bacteria|p__Firmicutes|c__CFGB10325 2|1239| 0.62218 | |
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria 2|1224|1236 0.45012 | |
| k__Archaea|p__Euryarchaeota|c__Halobacteria 2157|28890|183963 0.1391 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB653 2|976| 0.12673 | |
| k__Bacteria|p__Firmicutes|c__CFGB10314 2|1239| 0.10753 | |
| k__Bacteria|p__Firmicutes|c__CFGB13380 2|1239| 0.04116 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales 2|201174|84998|84999 22.05174 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales 2|976|200643|171549 21.42393 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales 2|1239|186801|186802 20.1462 | |
| k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales 2157|28890|183925|2158 9.93281 | |
| k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales 2|201174|1760|85004 4.69601 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB658|o__OFGB658 2|976|| 4.00689 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB11479|o__OFGB11479 2|976|| 3.29352 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales 2|201174|84998|1643822 2.89893 | |
| k__Bacteria|p__Firmicutes|c__CFGB9120|o__OFGB9120 2|1239|| 2.26587 | |
| k__Bacteria|p__Firmicutes|c__Firmicutes_unclassified|o__Firmicutes_unclassified 2|1239|| 1.82756 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB629|o__OFGB629 2|976|| 1.1017 | |
| k__Bacteria|p__Proteobacteria|c__CFGB544|o__OFGB544 2|1224|| 1.08346 | |
| k__Bacteria|p__Firmicutes|c__CFGB10312|o__OFGB10312 2|1239|| 1.03757 | |
| k__Bacteria|p__Firmicutes|c__CFGB31455|o__OFGB31455 2|1239|| 0.94711 | |
| k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales 2|1239|91061|186826 0.90652 | |
| k__Bacteria|p__Tenericutes|c__CFGB343|o__OFGB343 2|544448|| 0.89337 | |
| k__Bacteria|p__Firmicutes|c__CFGB10325|o__OFGB10325 2|1239|| 0.62218 | |
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Moraxellales 2|1224|1236|2887326 0.45012 | |
| k__Archaea|p__Euryarchaeota|c__Halobacteria|o__Halobacteriales 2157|28890|183963|2235 0.1391 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB653|o__OFGB653 2|976|| 0.12673 | |
| k__Bacteria|p__Firmicutes|c__CFGB10314|o__OFGB10314 2|1239|| 0.10753 | |
| k__Bacteria|p__Firmicutes|c__CFGB13380|o__OFGB13380 2|1239|| 0.04116 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae 2|976|200643|171549|171552 21.42393 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae 2|201174|84998|84999|84107 18.51077 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae 2|1239|186801|186802|216572 10.60522 | |
| k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae 2157|28890|183925|2158|2159 9.93281 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae 2|1239|186801|186802|186803 8.88321 | |
| k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae 2|201174|1760|85004|31953 4.69601 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB658|o__OFGB658|f__FGB658 2|976||| 4.00689 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae 2|201174|84998|84999|1643824 3.54097 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB11479|o__OFGB11479|f__FGB11479 2|976||| 3.29352 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae 2|201174|84998|1643822|1643826 2.89893 | |
| k__Bacteria|p__Firmicutes|c__CFGB9120|o__OFGB9120|f__FGB9120 2|1239||| 2.26587 | |
| k__Bacteria|p__Firmicutes|c__Firmicutes_unclassified|o__Firmicutes_unclassified|f__Firmicutes_unclassified 2|1239||| 1.82756 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB629|o__OFGB629|f__FGB629 2|976||| 1.1017 | |
| k__Bacteria|p__Proteobacteria|c__CFGB544|o__OFGB544|f__FGB544 2|1224||| 1.08346 | |
| k__Bacteria|p__Firmicutes|c__CFGB10312|o__OFGB10312|f__FGB10312 2|1239||| 1.03757 | |
| k__Bacteria|p__Firmicutes|c__CFGB31455|o__OFGB31455|f__FGB31455 2|1239||| 0.94711 | |
| k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae 2|1239|91061|186826|33958 0.90652 | |
| k__Bacteria|p__Tenericutes|c__CFGB343|o__OFGB343|f__FGB343 2|544448||| 0.89337 | |
| k__Bacteria|p__Firmicutes|c__CFGB10325|o__OFGB10325|f__FGB10325 2|1239||| 0.62218 | |
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae 2|1224|1236|2887326|468 0.45012 | |
| k__Archaea|p__Euryarchaeota|c__Halobacteria|o__Halobacteriales|f__Halococcaceae 2157|28890|183963|2235|1963270 0.1391 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB653|o__OFGB653|f__FGB653 2|976||| 0.12673 | |
| k__Bacteria|p__Firmicutes|c__CFGB10314|o__OFGB10314|f__FGB10314 2|1239||| 0.10753 | |
| k__Bacteria|p__Firmicutes|c__CFGB13380|o__OFGB13380|f__FGB13380 2|1239||| 0.04116 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella 2|976|200643|171549|171552|838 20.30091 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus 2|1239|186801|186802|216572|1263 10.52565 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella 2|201174|84998|84999|84107|102106 10.49214 | |
| k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter 2157|28890|183925|2158|2159|2172 9.93281 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__GGB18384 2|201174|84998|84999|84107| 8.01863 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Roseburia 2|1239|186801|186802|186803|841 6.67886 | |
| k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium 2|201174|1760|85004|31953|1678 4.69601 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB658|o__OFGB658|f__FGB658|g__GGB1627 2|976|||| 4.00689 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella 2|201174|84998|84999|1643824|2082587 3.54097 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB11479|o__OFGB11479|f__FGB11479|g__GGB1632 2|976|||| 2.76516 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__GGB4684 2|201174|84998|1643822|1643826| 2.40877 | |
| k__Bacteria|p__Firmicutes|c__CFGB9120|o__OFGB9120|f__FGB9120|g__GGB4642 2|1239|||| 2.26587 | |
| k__Bacteria|p__Firmicutes|c__Firmicutes_unclassified|o__Firmicutes_unclassified|f__Firmicutes_unclassified|g__Firmicutes_unclassified 2|1239|||| 1.82756 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Lachnospiraceae_unclassified 2|1239|186801|186802|186803| 1.36423 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia 2|976|200643|171549|171552|1926672 1.12302 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB629|o__OFGB629|f__FGB629|g__GGB1495 2|976|||| 1.1017 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB544|o__OFGB544|f__FGB544|g__GGB1123 2|976|||| 1.08346 | |
| k__Bacteria|p__Firmicutes|c__CFGB10312|o__OFGB10312|f__FGB10312|g__GGB4643 2|1239|||| 1.03757 | |
| k__Bacteria|p__Firmicutes|c__CFGB31455|o__OFGB31455|f__FGB31455|g__GGB4699 2|1239|||| 0.94711 | |
| k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__GGB4569 2|1239|91061|186826|33958| 0.90652 | |
| k__Bacteria|p__Tenericutes|c__CFGB343|o__OFGB343|f__FGB343|g__GGB781 2|544448|||| 0.89337 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Dorea 2|1239|186801|186802|186803|189330 0.64164 | |
| k__Bacteria|p__Firmicutes|c__CFGB10325|o__OFGB10325|f__FGB10325|g__GGB4669 2|1239|||| 0.62218 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB11479|o__OFGB11479|f__FGB11479|g__GGB1631 2|976|||| 0.52835 | |
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter 2|1224|1236|2887326|468|469 0.45012 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__GGB9420 2|201174|84998|1643822|1643826| 0.41243 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__GGB3420 2|1239|186801|186802|186803| 0.18466 | |
| k__Archaea|p__Euryarchaeota|c__Halobacteria|o__Halobacteriales|f__Halococcaceae|g__Halococcus 2157|28890|183963|2235|1963270|2249 0.1391 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB653|o__OFGB653|f__FGB653|g__GGB1615 2|976|||| 0.12673 | |
| k__Bacteria|p__Firmicutes|c__CFGB10314|o__OFGB10314|f__FGB10314|g__GGB4701 2|1239|||| 0.10753 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium 2|1239|186801|186802|216572|216851 0.07956 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__GGB4674 2|201174|84998|1643822|1643826| 0.06654 | |
| k__Bacteria|p__Firmicutes|c__CFGB13380|o__OFGB13380|f__FGB13380|g__GGB4708 2|1239|||| 0.04116 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Mediterraneibacter 2|1239|186801|186802|186803|2316020 0.01382 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__Phoenicibacter 2|201174|84998|1643822|1643826|1981050 0.01119 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_A 2|976|200643|171549|171552|838|165179 15.15712 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_bromii 2|1239|186801|186802|216572|1263|40518 10.52565 | |
| k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii 2157|28890|183925|2158|2159|2172|2173 9.93281 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_SGB14398 2|201174|84998|84999|84107|102106| 9.01163 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__GGB18384|s__GGB18384_SGB14372 2|201174|84998|84999|84107|| 8.01863 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Roseburia|s__Roseburia_faecis 2|1239|186801|186802|186803|841|301302 6.67886 | |
| k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium_adolescentis 2|201174|1760|85004|31953|1678|1680 4.69601 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB658|o__OFGB658|f__FGB658|g__GGB1627|s__GGB1627_SGB2230 2|976||||| 4.00689 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella_catena 2|201174|84998|84999|1643824|2082587|2003188 3.54097 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_C 2|976|200643|171549|171552|838|165179 3.48391 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB11479|o__OFGB11479|f__FGB11479|g__GGB1632|s__GGB1632_SGB2240 2|976||||| 2.76516 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__GGB4684|s__GGB4684_SGB6478 2|201174|84998|1643822|1643826|| 2.40877 | |
| k__Bacteria|p__Firmicutes|c__CFGB9120|o__OFGB9120|f__FGB9120|g__GGB4642|s__GGB4642_SGB6422 2|1239||||| 2.26587 | |
| k__Bacteria|p__Firmicutes|c__Firmicutes_unclassified|o__Firmicutes_unclassified|f__Firmicutes_unclassified|g__Firmicutes_unclassified|s__Firmicutes_bacterium_AM41_11 2|1239|||||2292893 1.82756 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_aerofaciens 2|201174|84998|84999|84107|102106|74426 1.46579 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Lachnospiraceae_unclassified|s__Eubacterium_rectale 2|1239|186801|186802|186803||39491 1.36423 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_B 2|976|200643|171549|171552|838|165179 1.31197 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia_timonensis 2|976|200643|171549|171552|1926672|1852370 1.12302 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB629|o__OFGB629|f__FGB629|g__GGB1495|s__GGB1495_SGB2071 2|976||||| 1.1017 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB544|o__OFGB544|f__FGB544|g__GGB1123|s__GGB1123_SGB1437 2|976||||| 1.08346 | |
| k__Bacteria|p__Firmicutes|c__CFGB10312|o__OFGB10312|f__FGB10312|g__GGB4643|s__GGB4643_SGB6427 2|1239||||| 1.03757 | |
| k__Bacteria|p__Firmicutes|c__CFGB31455|o__OFGB31455|f__FGB31455|g__GGB4699|s__GGB4699_SGB6503 2|1239||||| 0.94711 | |
| k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__GGB4569|s__GGB4569_SGB6312 2|1239|91061|186826|33958|| 0.90652 | |
| k__Bacteria|p__Tenericutes|c__CFGB343|o__OFGB343|f__FGB343|g__GGB781|s__GGB781_SGB1024 2|544448||||| 0.89337 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Peptostreptococcaceae|g__Romboutsia|s__Romboutsia_timonensis 2|1239|186801|186802|186804|1501226|1776391 0.65777 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Dorea|s__Dorea_longicatena 2|1239|186801|186802|186803|189330|88431 0.64164 | |
| k__Bacteria|p__Firmicutes|c__CFGB10325|o__OFGB10325|f__FGB10325|g__GGB4669|s__GGB4669_SGB6458 2|1239||||| 0.62218 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB11479|o__OFGB11479|f__FGB11479|g__GGB1631|s__GGB1631_SGB2239 2|976||||| 0.52835 | |
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_SGB65105 2|1224|1236|2887326|468|469| 0.45012 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__GGB9420|s__GGB9420_SGB14786 2|201174|84998|1643822|1643826|| 0.41243 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_F 2|976|200643|171549|171552|838|165179 0.34791 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__GGB3420|s__GGB3420_SGB4539 2|1239|186801|186802|186803|| 0.18466 | |
| k__Archaea|p__Euryarchaeota|c__Halobacteria|o__Halobacteriales|f__Halococcaceae|g__Halococcus|s__Halococcus_morrhuae 2157|28890|183963|2235|1963270|2249|2250 0.1391 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB653|o__OFGB653|f__FGB653|g__GGB1615|s__GGB1615_SGB2212 2|976||||| 0.12673 | |
| k__Bacteria|p__Firmicutes|c__CFGB10314|o__OFGB10314|f__FGB10314|g__GGB4701|s__GGB4701_SGB6508 2|1239||||| 0.10753 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium_prausnitzii 2|1239|186801|186802|216572|216851|853 0.07956 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__GGB4674|s__GGB4674_SGB6463 2|201174|84998|1643822|1643826|| 0.06654 | |
| k__Bacteria|p__Firmicutes|c__CFGB13380|o__OFGB13380|f__FGB13380|g__GGB4708|s__GGB4708_SGB6518 2|1239||||| 0.04116 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_bouchesdurhonensis 2|201174|84998|84999|84107|102106|1907654 0.01472 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Mediterraneibacter|s__Ruminococcus_torques 2|1239|186801|186802|186803|2316020|33039 0.01382 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__Phoenicibacter|s__Phoenicibacter_congonensis 2|201174|84998|1643822|1643826|1981050|1944646 0.01119 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_A|t__SGB1626 2|976|200643|171549|171552|838|165179| 15.15712 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_bromii|t__SGB4285 2|1239|186801|186802|216572|1263|40518| 10.52565 k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM28_29LB,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_TF12_19AC,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF37_3AC,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF43_11,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM34_10LB,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF16_40,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF17_11,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM31_32,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF42_10,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM36_18 | |
| k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii|t__SGB714 2157|28890|183925|2158|2159|2172|2173| 9.93281 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_sp_A54 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_SGB14398|t__SGB14398 2|201174|84998|84999|84107|102106|| 9.01163 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__GGB18384|s__GGB18384_SGB14372|t__SGB14372 2|201174|84998|84999|84107||| 8.01863 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Roseburia|s__Roseburia_faecis|t__SGB4925 2|1239|186801|186802|186803|841|301302| 6.67886 k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Roseburia|s__Roseburia_hominis,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Roseburia|s__Roseburia_sp_TF10_5 | |
| k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium_adolescentis|t__SGB17244_group 2|201174|1760|85004|31953|1678|1680| 4.69601 k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacteriaceae_unclassified|s__Bifidobacteriaceae_bacterium_MCC01943,k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium_faecale,k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacteriaceae_unclassified|s__Bifidobacteriaceae_bacterium_MCC01941 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB658|o__OFGB658|f__FGB658|g__GGB1627|s__GGB1627_SGB2230|t__SGB2230 2|976|||||| 4.00689 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella_catena|t__SGB14379 2|201174|84998|84999|1643824|2082587|2003188| 3.54097 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_C|t__SGB1644 2|976|200643|171549|171552|838|165179| 3.48391 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_sp_TF12_30,k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_sp_AM23_5 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB11479|o__OFGB11479|f__FGB11479|g__GGB1632|s__GGB1632_SGB2240|t__SGB2240 2|976|||||| 2.76516 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__GGB4684|s__GGB4684_SGB6478|t__SGB6478 2|201174|84998|1643822|1643826||| 2.40877 | |
| k__Bacteria|p__Firmicutes|c__CFGB9120|o__OFGB9120|f__FGB9120|g__GGB4642|s__GGB4642_SGB6422|t__SGB6422 2|1239|||||| 2.26587 | |
| k__Bacteria|p__Firmicutes|c__Firmicutes_unclassified|o__Firmicutes_unclassified|f__Firmicutes_unclassified|g__Firmicutes_unclassified|s__Firmicutes_bacterium_AM41_11|t__SGB6817 2|1239|||||2292893| 1.82756 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_aerofaciens|t__SGB14535_group 2|201174|84998|84999|84107|102106|74426| 1.46579 k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_sp_AF28_5AC,k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Coriobacteriaceae_unclassified|s__Coriobacteriaceae_bacterium,k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_sp_4_8_47FAA,k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_sp_AM38_1BH,k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_sp_AF25_2LB,k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_sp_TF05_9AC | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Lachnospiraceae_unclassified|s__Eubacterium_rectale|t__SGB4933 2|1239|186801|186802|186803||39491| 1.36423 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_B|t__SGB1613 2|976|200643|171549|171552|838|165179| 1.31197 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia_timonensis|t__SGB1477 2|976|200643|171549|171552|1926672|1852370| 1.12302 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB629|o__OFGB629|f__FGB629|g__GGB1495|s__GGB1495_SGB2071|t__SGB2071 2|976|||||| 1.1017 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB544|o__OFGB544|f__FGB544|g__GGB1123|s__GGB1123_SGB1437|t__SGB1437 2|976|||||| 1.08346 | |
| k__Bacteria|p__Firmicutes|c__CFGB10312|o__OFGB10312|f__FGB10312|g__GGB4643|s__GGB4643_SGB6427|t__SGB6427 2|1239|||||| 1.03757 | |
| k__Bacteria|p__Firmicutes|c__CFGB31455|o__OFGB31455|f__FGB31455|g__GGB4699|s__GGB4699_SGB6503|t__SGB6503 2|1239|||||| 0.94711 | |
| k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__GGB4569|s__GGB4569_SGB6312|t__SGB6312 2|1239|91061|186826|33958||| 0.90652 | |
| k__Bacteria|p__Tenericutes|c__CFGB343|o__OFGB343|f__FGB343|g__GGB781|s__GGB781_SGB1024|t__SGB1024 2|544448|||||| 0.89337 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Peptostreptococcaceae|g__Romboutsia|s__Romboutsia_timonensis|t__SGB6148 2|1239|186801|186802|186804|1501226|1776391| 0.65777 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Dorea|s__Dorea_longicatena|t__SGB4581 2|1239|186801|186802|186803|189330|88431| 0.64164 | |
| k__Bacteria|p__Firmicutes|c__CFGB10325|o__OFGB10325|f__FGB10325|g__GGB4669|s__GGB4669_SGB6458|t__SGB6458 2|1239|||||| 0.62218 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB11479|o__OFGB11479|f__FGB11479|g__GGB1631|s__GGB1631_SGB2239|t__SGB2239 2|976|||||| 0.52835 | |
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_SGB65105|t__SGB65105 2|1224|1236|2887326|468|469|| 0.45012 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__GGB9420|s__GGB9420_SGB14786|t__SGB14786 2|201174|84998|1643822|1643826||| 0.41243 | |
| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_F|t__SGB1614 2|976|200643|171549|171552|838|165179| 0.34791 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__GGB3420|s__GGB3420_SGB4539|t__SGB4539 2|1239|186801|186802|186803||| 0.18466 | |
| k__Archaea|p__Euryarchaeota|c__Halobacteria|o__Halobacteriales|f__Halococcaceae|g__Halococcus|s__Halococcus_morrhuae|t__SGB336 2157|28890|183963|2235|1963270|2249|2250| 0.1391 | |
| k__Bacteria|p__Bacteroidetes|c__CFGB653|o__OFGB653|f__FGB653|g__GGB1615|s__GGB1615_SGB2212|t__SGB2212 2|976|||||| 0.12673 | |
| k__Bacteria|p__Firmicutes|c__CFGB10314|o__OFGB10314|f__FGB10314|g__GGB4701|s__GGB4701_SGB6508|t__SGB6508 2|1239|||||| 0.10753 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium_prausnitzii|t__SGB15333 2|1239|186801|186802|216572|216851|853| 0.07956 k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium_sp_OM04_11BH | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__GGB4674|s__GGB4674_SGB6463|t__SGB6463 2|201174|84998|1643822|1643826||| 0.06654 | |
| k__Bacteria|p__Firmicutes|c__CFGB13380|o__OFGB13380|f__FGB13380|g__GGB4708|s__GGB4708_SGB6518|t__SGB6518 2|1239|||||| 0.04116 | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_bouchesdurhonensis|t__SGB14397 2|201174|84998|84999|84107|102106|1907654| 0.01472 k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella_sp_KGMB02528 | |
| k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Mediterraneibacter|s__Ruminococcus_torques|t__SGB4563 2|1239|186801|186802|186803|2316020|33039| 0.01382 k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter_faecis,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM22_14LB,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF31_14BH,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_TF08_4,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF32_2AC,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM33_14,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF25_17,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM49_8,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM09_18_1,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM57_5,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_OM08_13AT,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM41_2AC,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_OM07_7,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM16_34,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF24_16,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM29_1,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF25_13,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF12_5,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_TF10_6,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_OM04_4AA,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AM27_11LB,k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus_sp_AF27_11AA | |
| k__Bacteria|p__Actinobacteria|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__Phoenicibacter|s__Phoenicibacter_congonensis|t__SGB957 2|201174|84998|1643822|1643826|1981050|1944646| 0.01119 |
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