MarkEdmondson1234/r-installation-debain-wheezy

## r-installation-debain-wheezy
### r-installation-debain-wheezy
#### setup commands to setup R, RStudio and OpenCPU on a Google Compute Engine Wheezy instance
#### Mark Edmondson 29 June 2014
##
## No original work, all taken from these sources:
## https://github.com/jeroenooms/opencpu-deb/blob/master/build-on-debian.md
## https://support.rstudio.com/hc/communities/public/questions/200651456-RStudio-server-not-installable-on-Debian-Wheezy-just-released-this-week-
## http://cran.r-project.org/bin/linux/debian/README.html

# need to be sudo for all below
sudo -i

apt-get update
apt-get upgrade

# do this to avoid language warnings, run and select languages with spacebar
dpkg-reconfigure locales

#### Installations needed for opencpu
apt-get install apparmor-utils

## Edit /etc/default/grub to set:
## GRUB_CMDLINE_LINUX=" security=apparmor"
nano /etc/default/grub

update-grub
reboot

## log in again, set sudo status
sudo -i

## check apparmor works
aa-status

## need to backport Apache 2.4
apt-get purge apache2-*
apt-get autoremove --purge
echo "deb http://www.d7031.de/debian wheezy-experimental main" > /etc/apt/sources.list.d/apache-backport.list
apt-key adv --keyserver keyserver.ubuntu.net --recv-key 9EB5E8A3DF17D0B3
apt-get update
apt-get dist-upgrade
apt-get install apache2

##### Install R 3.01
apt-key adv --keyserver keyserver.ubuntu.net --recv-key 381BA480
echo "deb http://cran.r-project.org/bin/linux/debian wheezy-cran3/" > /etc/apt/sources.list.d/cran.list
apt-get update
apt-get upgrade
apt-get install git make devscripts apache2-dev apache2-mpm-prefork libapreq2-dev r-base-core r-base-dev

# install Rapache
git clone https://github.com/jeffreyhorner/rapache.git
cd rapache
debuild -us -uc
cd ..
dpkg -i libapache2*.deb
service apache2 restart
apt-get install r-base libapparmor-dev r-cran-rcpp libcurl4-openssl-dev xvfb xauth xfonts-base

# install openCPU
git clone https://github.com/jeroenooms/opencpu-deb
cd opencpu-deb/
debuild -us -uc
cd ..
dpkg -i opencpu-lib*.deb
dpkg -i opencpu-server*.deb

# Edit /etc/apparmor.d/opencpu-exec and comment-out or remove the line that starts with "signal"
# Edit /etc/apparmor.d/opencpu-main and comment-out or remove the line that starts with "signal"
nano /etc/apparmor.d/opencpu-exec
nano /etc/apparmor.d/opencpu-main

service apparmor restart
service opencpu restart

# Done! Navigate to http(s)://your.server.com/ocpu/

# install cache server
apt-get install nginx
dpkg -i opencpu-cache*.deb

##### Install Rstudio

# install backport of libcurl library
sudo apt-get install libcurl4-openssl-dev
wget http://ftp.dk.debian.org/debian/pool/main/o/openssl/libssl0.9.8_0.9.8o-4squeeze14_amd64.deb
dpkg -i libssl0.9.8_0.9.8o-4squeeze14_amd64.deb

# install gbedi to build RStudio
apt-get install gdebi-core

# download the latest version at http://www.rstudio.com/products/rstudio/download-server/
wget http://download2.rstudio.org/rstudio-server-0.98.945-amd64.deb
apt-get install debconf
sudo gdebi rstudio-server-0.98.945-amd64.deb
rstudio-server start

# Done!  RStudio running on port 8787 (remember to open port via GCE interface)

# ...but maybe you would like to run Rstudio at /rstudio/ on port 80?
# edit /etc/apache2/site-enabled/000-default to include below:
#### <VirtualHost *:80>
####
#### ProxyPass /rstudio/ http://localhost:8787/
#### ProxyPassReverse /rstudio/ http://localhost:8787/
#### RedirectMatch permanent ^/rstudio$ /rstudio/
####
#### </VirtualHost>

nano /etc/apache2/sites-enabled/000-default

/etc/init.d/apache2 restart

## create a webpage to display at http(s)://your.server.ip/
## below creates homepage with links to the OpenCPU and RStudio installations
echo '<!doctype html><html><body><h1>R on Google Compute Engine</h1><ul><li><a href="./rstudio/">RStudio Server</a></li><li><a href="./ocpu/test/">OpenCPU</a></li></ul></body></html>' | sudo tee /var/www/html/index.html
	### r-installation-debain-wheezy
	#### setup commands to setup R, RStudio and OpenCPU on a Google Compute Engine Wheezy instance
	#### Mark Edmondson 29 June 2014
	##
	## No original work, all taken from these sources:
	## https://github.com/jeroenooms/opencpu-deb/blob/master/build-on-debian.md
	## https://support.rstudio.com/hc/communities/public/questions/200651456-RStudio-server-not-installable-on-Debian-Wheezy-just-released-this-week-
	## http://cran.r-project.org/bin/linux/debian/README.html

	# need to be sudo for all below
	sudo -i

	apt-get update
	apt-get upgrade

	# do this to avoid language warnings, run and select languages with spacebar
	dpkg-reconfigure locales

	#### Installations needed for opencpu
	apt-get install apparmor-utils

	## Edit /etc/default/grub to set:
	## GRUB_CMDLINE_LINUX=" security=apparmor"
	nano /etc/default/grub

	update-grub
	reboot

	## log in again, set sudo status
	sudo -i

	## check apparmor works
	aa-status

	## need to backport Apache 2.4
	apt-get purge apache2-*
	apt-get autoremove --purge
	echo "deb http://www.d7031.de/debian wheezy-experimental main" > /etc/apt/sources.list.d/apache-backport.list
	apt-key adv --keyserver keyserver.ubuntu.net --recv-key 9EB5E8A3DF17D0B3
	apt-get update
	apt-get dist-upgrade
	apt-get install apache2

	##### Install R 3.01
	apt-key adv --keyserver keyserver.ubuntu.net --recv-key 381BA480
	echo "deb http://cran.r-project.org/bin/linux/debian wheezy-cran3/" > /etc/apt/sources.list.d/cran.list
	apt-get update
	apt-get upgrade
	apt-get install git make devscripts apache2-dev apache2-mpm-prefork libapreq2-dev r-base-core r-base-dev

	# install Rapache
	git clone https://github.com/jeffreyhorner/rapache.git
	cd rapache
	debuild -us -uc
	cd ..
	dpkg -i libapache2*.deb
	service apache2 restart
	apt-get install r-base libapparmor-dev r-cran-rcpp libcurl4-openssl-dev xvfb xauth xfonts-base

	# install openCPU
	git clone https://github.com/jeroenooms/opencpu-deb
	cd opencpu-deb/
	debuild -us -uc
	cd ..
	dpkg -i opencpu-lib*.deb
	dpkg -i opencpu-server*.deb

	# Edit /etc/apparmor.d/opencpu-exec and comment-out or remove the line that starts with "signal"
	# Edit /etc/apparmor.d/opencpu-main and comment-out or remove the line that starts with "signal"
	nano /etc/apparmor.d/opencpu-exec
	nano /etc/apparmor.d/opencpu-main

	service apparmor restart
	service opencpu restart

	# Done! Navigate to http(s)://your.server.com/ocpu/

	# install cache server
	apt-get install nginx
	dpkg -i opencpu-cache*.deb

	##### Install Rstudio

	# install backport of libcurl library
	sudo apt-get install libcurl4-openssl-dev
	wget http://ftp.dk.debian.org/debian/pool/main/o/openssl/libssl0.9.8_0.9.8o-4squeeze14_amd64.deb
	dpkg -i libssl0.9.8_0.9.8o-4squeeze14_amd64.deb

	# install gbedi to build RStudio
	apt-get install gdebi-core

	# download the latest version at http://www.rstudio.com/products/rstudio/download-server/
	wget http://download2.rstudio.org/rstudio-server-0.98.945-amd64.deb
	apt-get install debconf
	sudo gdebi rstudio-server-0.98.945-amd64.deb
	rstudio-server start

	# Done! RStudio running on port 8787 (remember to open port via GCE interface)

	# ...but maybe you would like to run Rstudio at /rstudio/ on port 80?
	# edit /etc/apache2/site-enabled/000-default to include below:
	#### <VirtualHost *:80>
	####
	#### ProxyPass /rstudio/ http://localhost:8787/
	#### ProxyPassReverse /rstudio/ http://localhost:8787/
	#### RedirectMatch permanent ^/rstudio$ /rstudio/
	####
	#### </VirtualHost>

	nano /etc/apache2/sites-enabled/000-default

	/etc/init.d/apache2 restart

	## create a webpage to display at http(s)://your.server.ip/
	## below creates homepage with links to the OpenCPU and RStudio installations
	echo '<!doctype html><html><body><h1>R on Google Compute Engine</h1><ul><li><a href="./rstudio/">RStudio Server</a></li><li><a href="./ocpu/test/">OpenCPU</a></li></ul></body></html>' \| sudo tee /var/www/html/index.html