Setup symengine R package with miniconda in docker

setup_symengine_with_miniconda.sh

#!/usr/bin/env bash

set -ex

#### Run this inside Ubuntu docker image

cd ~/

apt-get update

apt-get install -y \
    wget \
    build-essential \
    gfortran \
    zlib1g-dev \
    libbz2-dev \
    liblzma-dev \
    libpcre2-dev \
    libcurl4-gnutls-dev \
    default-jdk

wget https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-Linux-x86_64.sh

bash Miniconda3-py39_4.12.0-Linux-x86_64.sh -b -p ~/miniconda/

~/miniconda/bin/conda init bash
# . ~/.bashrc
. ~/miniconda/etc/profile.d/conda.sh

conda create -y -n test_symengine
conda activate test_symengine
conda install -y gmp mpfr cmake

hash -r

CWD=`pwd`
VERSION=4.2.2

wget http://cloud.r-project.org/src/base/R-4/R-$VERSION.tar.gz

tar xf R-$VERSION.tar.gz

(cd R-$VERSION && \
    PKG_CONFIG_PATH=$CONDA_PREFIX/lib/pkgconfig  \
    CPPFLAGS=-I$CONDA_PREFIX/include  \
    LDFLAGS="-L$CONDA_PREFIX/lib -Wl,-rpath=$CONDA_PREFIX/lib"  \
    ./configure --prefix=$CWD/usr --with-readline=no --with-x=no)
(cd R-$VERSION && make -j48)
(cd R-$VERSION && make install)

# Needs cmake from conda environment.
# while [ ! -z $CONDA_PREFIX ]; do conda deactivate; done

~/usr/bin/R -e 'install.packages("Rcpp", repos="http://cran.us.r-project.org")'

wget https://cran.r-project.org/src/contrib/symengine_0.2.2.tar.gz

~/usr/bin/R -e 'install.packages("symengine_0.2.2.tar.gz", repos=NULL, type="source")'

~/usr/bin/R -e 'library(symengine); print(S(~ x)^2L)'