Build Log of Failed Bioperl installation (DB_File)

build.log

cpanm (App::cpanminus) 1.7044 on perl 5.030003 built for x86_64-linux
Work directory is /home/stud/ga42vor/.cpanm/work/1591284525.30081
You have make /usr/bin/make
You have LWP 6.44
You have /bin/tar: tar (GNU tar) 1.29
Copyright © 2015 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

Written by John Gilmore and Jay Fenlason.
You have /usr/bin/unzip
Searching Bio::Tree::Tree () on cpanmetadb ...
--> Working on Bio::Tree::Tree
Fetching http://www.cpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-1.7.7.tar.gz
-> OK
Unpacking BioPerl-1.7.7.tar.gz
Entering BioPerl-1.7.7
Checking configure dependencies from META.json
Checking if you have ExtUtils::MakeMaker 6.58 ... Yes (7.34)
Configuring BioPerl-1.7.7
Running Makefile.PL
Warning: prerequisite DB_File 0 not found.
Warning: prerequisite XML::DOM::XPath 0 not found.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for BioPerl
Writing MYMETA.yml and MYMETA.json
-> OK
Checking dependencies from MYMETA.json ...
Checking if you have XML::Twig 0 ... Yes (3.52)
Checking if you have IO::Socket 0 ... Yes (1.40)
Checking if you have DB_File 0 ... No
Checking if you have File::Copy 0 ... Yes (2.34)
Checking if you have vars 0 ... Yes (1.05)
Checking if you have IO::String 0 ... Yes (1.08)
Checking if you have Pod::Usage 0 ... Yes (1.69)
Checking if you have Test::Builder::Module 0 ... Yes (1.302162)
Checking if you have Set::Scalar 0 ... Yes (1.29)
Checking if you have UNIVERSAL 0 ... Yes (1.13)
Checking if you have FindBin 0 ... Yes (1.51)
Checking if you have HTTP::Response 0 ... Yes (6.24)
Checking if you have File::Basename 0 ... Yes (2.85)
Checking if you have Error 0 ... Yes (0.17029)
Checking if you have Test::More 0 ... Yes (1.302162)
Checking if you have XML::LibXML 0 ... Yes (2.0205)
Checking if you have Getopt::Long 0 ... Yes (2.5)
Checking if you have File::Spec 0 ... Yes (3.78)
Checking if you have YAML 0 ... Yes (1.30)
Checking if you have XML::SAX::Base 0 ... Yes (1.09)
Checking if you have AnyDBM_File 0 ... Yes (1.01)
Checking if you have Tie::RefHash 0 ... Yes (1.39)
Checking if you have Test::Most 0 ... Yes (0.37)
Checking if you have parent 0 ... Yes (0.237)
Checking if you have Carp 0 ... Yes (1.50)
Checking if you have Tie::Handle 0 ... Yes (4.2)
Checking if you have IO::Handle 0 ... Yes (1.40)
Checking if you have Time::HiRes 0 ... Yes (1.9760)
Checking if you have File::Spec::Functions 0 ... Yes (3.78)
Checking if you have Data::Dumper 0 ... Yes (2.174)
Checking if you have base 0 ... Yes (2.27)
Checking if you have FileHandle 0 ... Yes (2.03)
Checking if you have XML::DOM::XPath 0 ... No
Checking if you have IO::Scalar 0 ... Yes (2.113)
Checking if you have Graph::Directed 0 ... Yes (undef)
Checking if you have Math::BigFloat 0 ... Yes (1.999816)
Checking if you have POSIX 0 ... Yes (1.88)
Checking if you have Test::Weaken 0 ... Yes (3.022000)
Checking if you have File::Path 0 ... Yes (2.16)
Checking if you have warnings 0 ... Yes (1.44)
Checking if you have IPC::Run 0 ... Yes (20200505.0)
Checking if you have Text::Balanced 0 ... Yes (2.03)
Checking if you have IPC::Open3 0 ... Yes (1.20)
Checking if you have utf8 0 ... Yes (1.22)
Checking if you have Test::Memory::Cycle 0 ... Yes (1.06)
Checking if you have List::MoreUtils 0 ... Yes (0.428)
Checking if you have strict 0 ... Yes (1.11)
Checking if you have XML::Writer 0 ... Yes (0.625)
Checking if you have Data::Stag 0 ... Yes (0.14)
Checking if you have Module::Build 0 ... Yes (0.4231)
Checking if you have URI 0 ... Yes (1.76)
Checking if you have Digest::MD5 0 ... Yes (2.55)
Checking if you have File::Temp 0 ... Yes (0.2309)
Checking if you have Storable 0 ... Yes (3.15)
Checking if you have List::Util 0 ... Yes (1.50)
Checking if you have IO::Pipe 0 ... Yes (1.40)
Checking if you have Symbol 0 ... Yes (1.08)
Checking if you have version 0 ... Yes (0.9924)
Checking if you have XML::DOM 0 ... Yes (1.46)
Checking if you have Text::Wrap 0 ... Yes (2013.0523)
Checking if you have Cwd 0 ... Yes (3.78)
Checking if you have XML::SAX 0 ... Yes (1.02)
Checking if you have lib 0 ... Yes (0.65)
Checking if you have integer 0 ... Yes (1.01)
Checking if you have XML::LibXML::Reader 0 ... Yes (2.0205)
Checking if you have overload 0 ... Yes (1.30)
Checking if you have LWP::UserAgent 0 ... Yes (6.44)
Checking if you have Exporter 0 ... Yes (5.73)
Checking if you have HTTP::Request::Common 0 ... Yes (6.24)
Checking if you have Dumpvalue 0 ... Yes (1.18)
Checking if you have constant 0 ... Yes (1.33)
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.34)
Checking if you have XML::Parser::PerlSAX 0 ... Yes (0.08)
Checking if you have Test::RequiresInternet 0 ... Yes (0.05)
Checking if you have Scalar::Util 0 ... Yes (1.50)
Checking if you have IO::File 0 ... Yes (1.40)
Checking if you have Fcntl 0 ... Yes (1.13)
Checking if you have Test::Builder 0 ... Yes (1.302162)
Checking if you have XML::SAX::Writer 0 ... Yes (0.57)
==> Found dependencies: DB_File, XML::DOM::XPath
Searching DB_File (0) on cpanmetadb ...
--> Working on DB_File
Fetching http://www.cpan.org/authors/id/P/PM/PMQS/DB_File-1.853.tar.gz
-> OK
Unpacking DB_File-1.853.tar.gz
Entering DB_File-1.853
Checking configure dependencies from META.json
Checking if you have ExtUtils::MakeMaker 6.58 ... Yes (7.34)
Configuring DB_File-1.853
Running Makefile.PL
Parsing config.in...
Looks Good.
Checking if your kit is complete...
Looks good
Warning (mostly harmless): No library found for -ldb
Generating a Unix-style Makefile
Writing Makefile for DB_File
Writing MYMETA.yml and MYMETA.json
-> OK
Checking dependencies from MYMETA.json ...
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.34)
Building and testing DB_File-1.853
cp DB_File.pm blib/lib/DB_File.pm
Running Mkbootstrap for DB_File ()
chmod 644 "DB_File.bs"
"/home/stud/ga42vor/perl5/perlbrew/perls/perl-5.30.3/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- DB_File.bs blib/arch/auto/DB_File/DB_File.bs 644
cc -c  -I/usr/local/BerkeleyDB/include -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2   -DVERSION=\"1.853\" -DXS_VERSION=\"1.853\" -fPIC "-I/home/stud/ga42vor/perl5/perlbrew/perls/perl-5.30.3/lib/5.30.3/x86_64-linux/CORE"  -D_NOT_CORE  -DmDB_Prefix_t=size_t -DmDB_Hash_t=u_int32_t   version.c
version.c:30:10: fatal error: db.h: No such file or directory
 #include <db.h>
          ^~~~~~
compilation terminated.
Makefile:352: recipe for target 'version.o' failed
make: *** [version.o] Error 1
-> FAIL Installing DB_File failed. See /home/stud/ga42vor/.cpanm/work/1591284525.30081/build.log for details. Retry with --force to force install it.
Searching XML::DOM::XPath (0) on cpanmetadb ...
--> Working on XML::DOM::XPath
Fetching http://www.cpan.org/authors/id/M/MI/MIROD/XML-DOM-XPath-0.14.tar.gz
-> OK
Unpacking XML-DOM-XPath-0.14.tar.gz
Entering XML-DOM-XPath-0.14
Checking configure dependencies from META.yml
Configuring XML-DOM-XPath-0.14
Running Makefile.PL
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for XML::DOM::XPath
Writing MYMETA.yml and MYMETA.json
-> OK
Checking dependencies from MYMETA.json ...
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.34)
Checking if you have XML::XPathEngine 0.1 ... Yes (0.14)
Checking if you have XML::DOM 0 ... Yes (1.46)
Building and testing XML-DOM-XPath-0.14
cp XPath.pm blib/lib/XML/DOM/XPath.pm
Manifying 1 pod document
PERL_DL_NONLAZY=1 "/home/stud/ga42vor/perl5/perlbrew/perls/perl-5.30.3/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/1.t ................................. ok
skipping, Test::Pod required
t/pod.t ............................... ok
Test::Pod::Coverage 1.00 required for testing POD coverage at t/pod_coverage.t line 6.
t/pod_coverage.t ...................... ok
t/test_bugs.t ......................... ok
The encoding pragma is no longer supported. Check cperl at t/test_non_ascii.t line 10.
BEGIN failed--compilation aborted at t/test_non_ascii.t line 10.
# Looks like your test exited with 2 before it could output anything.
t/test_non_ascii.t .................... 
Dubious, test returned 2 (wstat 512, 0x200)
Failed 10/10 subtests 
t/test_xml_xpath_and_xml_dom_xpath.t .. ok
t/xmlxpath_01basic.t .................. ok
t/xmlxpath_02descendant.t ............. ok
t/xmlxpath_03star.t ................... ok
t/xmlxpath_04pos.t .................... ok
t/xmlxpath_05attrib.t ................. ok
t/xmlxpath_06attrib_val.t ............. ok
t/xmlxpath_07count.t .................. ok
t/xmlxpath_08name.t ................... ok
t/xmlxpath_09a_string_length.t ........ ok
t/xmlxpath_09string_length.t .......... ok
t/xmlxpath_10pipe.t ................... ok
t/xmlxpath_12axisdescendant.t ......... ok
t/xmlxpath_13axisparent.t ............. ok
t/xmlxpath_14axisancestor.t ........... ok
t/xmlxpath_15axisfol_sib.t ............ ok
t/xmlxpath_16axisprec_sib.t ........... ok
t/xmlxpath_17axisfollowing.t .......... ok
t/xmlxpath_18axispreceding.t .......... ok
t/xmlxpath_19axisd_or_s.t ............. ok
t/xmlxpath_20axisa_or_s.t ............. ok
t/xmlxpath_21allnodes.t ............... ok
t/xmlxpath_22name_select.t ............ ok
t/xmlxpath_23func.t ................... ok
t/xmlxpath_24namespaces.t ............. ok
t/xmlxpath_25scope.t .................. ok
t/xmlxpath_26predicate.t .............. ok
t/xmlxpath_28ancestor2.t .............. ok
t/xmlxpath_29desc_with_predicate.t .... ok
t/xmlxpath_30lang.t ................... ok

Test Summary Report
-------------------
t/test_non_ascii.t                  (Wstat: 512 Tests: 0 Failed: 0)
  Non-zero exit status: 2
  Parse errors: Bad plan.  You planned 10 tests but ran 0.
Files=35, Tests=183,  5 wallclock secs ( 0.12 usr  0.03 sys +  2.81 cusr  0.40 csys =  3.36 CPU)
Result: FAIL
Failed 1/35 test programs. 0/183 subtests failed.
Makefile:841: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
-> FAIL Installing XML::DOM::XPath failed. See /home/stud/ga42vor/.cpanm/work/1591284525.30081/build.log for details. Retry with --force to force install it.
-> FAIL Installing the dependencies failed: Module 'DB_File' is not installed, Module 'XML::DOM::XPath' is not installed
-> FAIL Bailing out the installation for BioPerl-1.7.7.

Hi,

have you resolved the probleme ?
thanks in advance

best regards