Pangolin Conda Env

conda_dependencies.txt

# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
_libgcc_mutex=0.1=main
_openmp_mutex=5.1=1_gnu
argcomplete=3.1.1=pypi_0
argh=0.27.2=pypi_0
biopython=1.79=pypi_0
ca-certificates=2023.7.22=hbcca054_0
certifi=2016.9.26=py36_0
dataclasses=0.8=pypi_0
gffutils=0.12=pypi_0
importlib-metadata=4.8.3=pypi_0
ld_impl_linux-64=2.38=h1181459_1
libffi=3.3=he6710b0_2
libgcc-ng=11.2.0=h1234567_1
libgomp=11.2.0=h1234567_1
libstdcxx-ng=11.2.0=h1234567_1
ncurses=6.4=h6a678d5_0
numpy=1.19.5=pypi_0
openssl=1.1.1l=h7f98852_0
pandas=1.1.5=pypi_0
pangolin=1.0.2=pypi_0
pillow=8.4.0=pypi_0
pip=21.2.2=py36h06a4308_0
pyfaidx=0.7.1=pypi_0
pyfastx=1.1.0=pypi_0
python=3.6.13=h12debd9_1
python-dateutil=2.8.2=pypi_0
python_abi=3.6=2_cp36m
pytz=2023.3=pypi_0
pyvcf=0.6.8=py36h9f0ad1d_1002
readline=8.2=h5eee18b_0
setuptools=58.0.4=py36h06a4308_0
simplejson=3.19.1=pypi_0
six=1.16.0=pypi_0
sqlite=3.41.2=h5eee18b_0
tk=8.6.12=h1ccaba5_0
torch=1.8.2+cpu=pypi_0
torchaudio=0.8.2=pypi_0
torchvision=0.9.2+cpu=pypi_0
typing-extensions=4.1.1=pypi_0
wheel=0.37.1=pyhd3eb1b0_0
xz=5.4.2=h5eee18b_0
zipp=3.6.0=pypi_0
zlib=1.2.13=h5eee18b_0

pip_dependencies.txt

argcomplete==3.1.1
argh==0.27.2
biopython==1.79
certifi==2016.9.26
dataclasses==0.8
gffutils==0.12
importlib-metadata==4.8.3
numpy==1.19.5
pandas==1.1.5
pangolin @ PATHTOYOURPANGOLIN/Pangolin
Pillow==8.4.0
pyfaidx==0.7.1
pyfastx==1.1.0
python-dateutil==2.8.2
pytz==2023.3
PyVCF @ file:///home/conda/feedstock_root/build_artifacts/pyvcf_1602591194980/work
simplejson==3.19.1
six==1.16.0
torch==1.8.2+cpu
torchaudio==0.8.2
torchvision==0.9.2+cpu
typing_extensions==4.1.1
zipp==3.6.0