Created
August 24, 2017 01:44
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| Collecting openbabel | |
| Using cached openbabel-2.4.1.tar.gz | |
| Building wheels for collected packages: openbabel | |
| Running setup.py bdist_wheel for openbabel ... error | |
| Complete output from command /Users/melanie/anaconda/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/kp/q4m56gkx7rj1g1r_ywpyt3cc0000gn/T/pip-build-mqt3cds7/openbabel/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /var/folders/kp/q4m56gkx7rj1g1r_ywpyt3cc0000gn/T/tmpz5m2j2_fpip-wheel- --python-tag cp36: | |
| running bdist_wheel | |
| running build | |
| running build_ext | |
| Open Babel location automatically determined by pkg-config: | |
| - include_dirs: ['/Users/melanie/anaconda/include/python3.6m', '/usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0'] | |
| - library_dirs: ['/Users/melanie/anaconda/lib', '/usr/local/Cellar/open-babel/2.4.1/lib'] | |
| building '_openbabel' extension | |
| swigging openbabel-python.i to openbabel-python_wrap.cpp | |
| swig -python -c++ -small -O -templatereduce -naturalvar -I/Users/melanie/anaconda/include/python3.6m -I/usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0 -o openbabel-python_wrap.cpp openbabel-python.i | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/obconversion.h:369: Warning 325: Nested struct not currently supported (StreamState ignored) | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/isomorphism.h:159: Warning 325: Nested class not currently supported (Functor ignored) | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/spectrophore.h:571: Warning 312: Nested struct not currently supported (ignored). | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/spectrophore.h:578: Warning 312: Nested struct not currently supported (ignored). | |
| creating build | |
| creating build/temp.macosx-10.7-x86_64-3.6 | |
| gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/melanie/anaconda/include -arch x86_64 -I/Users/melanie/anaconda/include -arch x86_64 -I/Users/melanie/anaconda/include/python3.6m -I/usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0 -c openbabel-python_wrap.cpp -o build/temp.macosx-10.7-x86_64-3.6/openbabel-python_wrap.o | |
| In file included from openbabel-python_wrap.cpp:3395: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] | |
| double GetValue(int i, int j, int k) const; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/base.h:229:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) | |
| virtual const std::string &GetValue() const | |
| ^ | |
| In file included from openbabel-python_wrap.cpp:3395: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] | |
| double GetValue (vector3 pos) const; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/base.h:229:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) | |
| virtual const std::string &GetValue() const | |
| ^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:39:15: error: no member named 'shared_ptr' in namespace 'std' | |
| std::vector<obsharedptr<OBMol> > _reactants; | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:39:27: error: 'OBMol' does not refer to a value | |
| std::vector<obsharedptr<OBMol> > _reactants; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/mol.h:113:14: note: declared here | |
| class OBAPI OBMol: public OBBase | |
| ^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:39:34: error: expected member name or ';' after declaration specifiers | |
| std::vector<obsharedptr<OBMol> > _reactants; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:40:15: error: no member named 'shared_ptr' in namespace 'std' | |
| std::vector<obsharedptr<OBMol> > _products; | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:40:27: error: 'OBMol' does not refer to a value | |
| std::vector<obsharedptr<OBMol> > _products; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/mol.h:113:14: note: declared here | |
| class OBAPI OBMol: public OBBase | |
| ^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:40:34: error: expected member name or ';' after declaration specifiers | |
| std::vector<obsharedptr<OBMol> > _products; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:41:3: error: no type named 'shared_ptr' in namespace 'std' | |
| obsharedptr<OBMol> _ts; | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:41:14: error: expected member name or ';' after declaration specifiers | |
| obsharedptr<OBMol> _ts; | |
| ~~~~~~~~~~~^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:42:3: error: no type named 'shared_ptr' in namespace 'std' | |
| obsharedptr<OBMol> _agent; | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:42:14: error: expected member name or ';' after declaration specifiers | |
| obsharedptr<OBMol> _agent; | |
| ~~~~~~~~~~~^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:56:26: error: no type named 'shared_ptr' in namespace 'std' | |
| void AddReactant(const obsharedptr<OBMol> sp) | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:56:37: error: expected ')' | |
| void AddReactant(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:56:19: note: to match this '(' | |
| void AddReactant(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:59:25: error: no type named 'shared_ptr' in namespace 'std' | |
| void AddProduct(const obsharedptr<OBMol> sp) | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:59:36: error: expected ')' | |
| void AddProduct(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:59:18: note: to match this '(' | |
| void AddProduct(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:62:33: error: no type named 'shared_ptr' in namespace 'std' | |
| void SetTransitionState(const obsharedptr<OBMol> sp) | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:62:44: error: expected ')' | |
| void SetTransitionState(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:62:26: note: to match this '(' | |
| void SetTransitionState(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:65:23: error: no type named 'shared_ptr' in namespace 'std' | |
| void AddAgent(const obsharedptr<OBMol> sp) | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:65:34: error: expected ')' | |
| void AddAgent(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:65:16: note: to match this '(' | |
| void AddAgent(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:68:3: error: no type named 'shared_ptr' in namespace 'std' | |
| obsharedptr<OBMol> GetReactant(const unsigned i) | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| fatal error: too many errors emitted, stopping now [-ferror-limit=] | |
| 2 warnings and 20 errors generated. | |
| error: command 'gcc' failed with exit status 1 | |
| ---------------------------------------- | |
| Failed building wheel for openbabel | |
| Running setup.py clean for openbabel | |
| Failed to build openbabel | |
| Installing collected packages: openbabel | |
| Running setup.py install for openbabel ... error | |
| Complete output from command /Users/melanie/anaconda/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/kp/q4m56gkx7rj1g1r_ywpyt3cc0000gn/T/pip-build-mqt3cds7/openbabel/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/kp/q4m56gkx7rj1g1r_ywpyt3cc0000gn/T/pip-npjgjsfn-record/install-record.txt --single-version-externally-managed --compile: | |
| running install | |
| running build_ext | |
| Open Babel location automatically determined by pkg-config: | |
| - include_dirs: ['/Users/melanie/anaconda/include/python3.6m', '/usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0'] | |
| - library_dirs: ['/Users/melanie/anaconda/lib', '/usr/local/Cellar/open-babel/2.4.1/lib'] | |
| building '_openbabel' extension | |
| swigging openbabel-python.i to openbabel-python_wrap.cpp | |
| swig -python -c++ -small -O -templatereduce -naturalvar -I/Users/melanie/anaconda/include/python3.6m -I/usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0 -o openbabel-python_wrap.cpp openbabel-python.i | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/obconversion.h:369: Warning 325: Nested struct not currently supported (StreamState ignored) | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/isomorphism.h:159: Warning 325: Nested class not currently supported (Functor ignored) | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/spectrophore.h:571: Warning 312: Nested struct not currently supported (ignored). | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/spectrophore.h:578: Warning 312: Nested struct not currently supported (ignored). | |
| creating build | |
| creating build/temp.macosx-10.7-x86_64-3.6 | |
| gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/melanie/anaconda/include -arch x86_64 -I/Users/melanie/anaconda/include -arch x86_64 -I/Users/melanie/anaconda/include/python3.6m -I/usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0 -c openbabel-python_wrap.cpp -o build/temp.macosx-10.7-x86_64-3.6/openbabel-python_wrap.o | |
| In file included from openbabel-python_wrap.cpp:3395: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] | |
| double GetValue(int i, int j, int k) const; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/base.h:229:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) | |
| virtual const std::string &GetValue() const | |
| ^ | |
| In file included from openbabel-python_wrap.cpp:3395: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] | |
| double GetValue (vector3 pos) const; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/base.h:229:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) | |
| virtual const std::string &GetValue() const | |
| ^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:39:15: error: no member named 'shared_ptr' in namespace 'std' | |
| std::vector<obsharedptr<OBMol> > _reactants; | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:39:27: error: 'OBMol' does not refer to a value | |
| std::vector<obsharedptr<OBMol> > _reactants; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/mol.h:113:14: note: declared here | |
| class OBAPI OBMol: public OBBase | |
| ^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:39:34: error: expected member name or ';' after declaration specifiers | |
| std::vector<obsharedptr<OBMol> > _reactants; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:40:15: error: no member named 'shared_ptr' in namespace 'std' | |
| std::vector<obsharedptr<OBMol> > _products; | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:40:27: error: 'OBMol' does not refer to a value | |
| std::vector<obsharedptr<OBMol> > _products; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/mol.h:113:14: note: declared here | |
| class OBAPI OBMol: public OBBase | |
| ^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:40:34: error: expected member name or ';' after declaration specifiers | |
| std::vector<obsharedptr<OBMol> > _products; | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:41:3: error: no type named 'shared_ptr' in namespace 'std' | |
| obsharedptr<OBMol> _ts; | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:41:14: error: expected member name or ';' after declaration specifiers | |
| obsharedptr<OBMol> _ts; | |
| ~~~~~~~~~~~^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:42:3: error: no type named 'shared_ptr' in namespace 'std' | |
| obsharedptr<OBMol> _agent; | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:42:14: error: expected member name or ';' after declaration specifiers | |
| obsharedptr<OBMol> _agent; | |
| ~~~~~~~~~~~^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:56:26: error: no type named 'shared_ptr' in namespace 'std' | |
| void AddReactant(const obsharedptr<OBMol> sp) | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:56:37: error: expected ')' | |
| void AddReactant(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:56:19: note: to match this '(' | |
| void AddReactant(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:59:25: error: no type named 'shared_ptr' in namespace 'std' | |
| void AddProduct(const obsharedptr<OBMol> sp) | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:59:36: error: expected ')' | |
| void AddProduct(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:59:18: note: to match this '(' | |
| void AddProduct(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:62:33: error: no type named 'shared_ptr' in namespace 'std' | |
| void SetTransitionState(const obsharedptr<OBMol> sp) | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:62:44: error: expected ')' | |
| void SetTransitionState(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:62:26: note: to match this '(' | |
| void SetTransitionState(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:65:23: error: no type named 'shared_ptr' in namespace 'std' | |
| void AddAgent(const obsharedptr<OBMol> sp) | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| In file included from openbabel-python_wrap.cpp:3401: | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:65:34: error: expected ')' | |
| void AddAgent(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:65:16: note: to match this '(' | |
| void AddAgent(const obsharedptr<OBMol> sp) | |
| ^ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/reaction.h:68:3: error: no type named 'shared_ptr' in namespace 'std' | |
| obsharedptr<OBMol> GetReactant(const unsigned i) | |
| ^~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/shared_ptr.h:25:23: note: expanded from macro 'obsharedptr' | |
| #define obsharedptr OB_SHARED_PTR_IMPLEMENTATION | |
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| /usr/local/Cellar/open-babel/2.4.1/include/openbabel-2.0/openbabel/babelconfig.h:153:43: note: expanded from macro 'OB_SHARED_PTR_IMPLEMENTATION' | |
| #define OB_SHARED_PTR_IMPLEMENTATION std::shared_ptr | |
| ~~~~~^ | |
| fatal error: too many errors emitted, stopping now [-ferror-limit=] | |
| 2 warnings and 20 errors generated. | |
| error: command 'gcc' failed with exit status 1 | |
| ---------------------------------------- | |
| Command "/Users/melanie/anaconda/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/kp/q4m56gkx7rj1g1r_ywpyt3cc0000gn/T/pip-build-mqt3cds7/openbabel/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/kp/q4m56gkx7rj1g1r_ywpyt3cc0000gn/T/pip-npjgjsfn-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/kp/q4m56gkx7rj1g1r_ywpyt3cc0000gn/T/pip-build-mqt3cds7/openbabel/ |
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