Created
June 19, 2024 10:27
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(partial) EasyBuild log for failed build of /dev/shm/eb-058lq0j8/files_pr20675/g/GDAL/GDAL-3.9.0-foss-2023b.eb (PR(s) #20675)
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| == 2024-06-19 10:27:31,053 easyblock.py:313 INFO This is EasyBuild 4.9.2 (framework: 4.9.2, easyblocks: 4.9.2) on host alvis-skylake-build. | |
| == 2024-06-19 10:27:31,053 easyblock.py:319 INFO This is easyblock CMakeMake from module easybuild.easyblocks.generic.cmakemake (/apps/Common/software/EasyBuild/4.9.2/lib/python3.6/site-packages/easybuild/easyblocks/generic/cmakemake.py) | |
| == 2024-06-19 10:27:31,053 easyblock.py:1056 INFO Build dir set to /dev/shm/GDAL/3.9.0/foss-2023b | |
| == 2024-06-19 10:27:31,054 easyblock.py:1113 INFO Software install dir set to /apps/Test2/software/GDAL/3.9.0-foss-2023b | |
| == 2024-06-19 10:27:31,054 easyblock.py:1118 INFO Module install dir set to /apps/Test2/fmodules/all | |
| == 2024-06-19 10:27:31,054 easyblock.py:288 INFO Init completed for application name GDAL version 3.9.0 | |
| == 2024-06-19 10:27:31,054 easyblock.py:4228 INFO Obtained application instance of for GDAL (easyblock: CMakeMake) | |
| == 2024-06-19 10:27:31,054 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-06-19 10:27:31,054 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-19 10:27:31,054 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-19 10:27:31,055 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gdal', cuda_cc_cmake='70;75', cuda_cc_semicolon_sep='7.0;7.5', cuda_cc_space_sep='7.0 7.5', cuda_compute_capabilities='7.0,7.5', cuda_sm_comma_sep='sm_70,sm_75', cuda_sm_space_sep='sm_70 sm_75', github_account='gdal', module_name='GDAL/3.9.0-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='GDAL', nameletter='G', nameletterlower='g', namelower='gdal', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.9.0', version_major='3', version_major_minor='3.9', version_minor='9', versionprefix='', versionsuffix='' | |
| == 2024-06-19 10:27:31,056 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2024-06-19 10:27:31,056 one.py:180 INFO Skipping reformatting value for parameter 'toolchainopts' | |
| == 2024-06-19 10:27:31,057 filetools.py:1912 INFO Creating directory /dev/shm/eb-058lq0j8/reprod_20240619102731_788839 (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-19 10:27:31,057 easyblock.py:4482 INFO Dumped easyconfig instance to /dev/shm/eb-058lq0j8/reprod_20240619102731_788839/GDAL-3.9.0-foss-2023b.eb | |
| == 2024-06-19 10:27:31,058 filetools.py:1912 INFO Creating directory /dev/shm/eb-058lq0j8/reprod_20240619102731_788839/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-19 10:27:31,059 filetools.py:2425 INFO /apps/Common/software/EasyBuild/4.9.2/lib/python3.6/site-packages/easybuild/easyblocks/generic/configuremake.py copied to /dev/shm/eb-058lq0j8/reprod_20240619102731_788839/easyblocks/configuremake.py | |
| == 2024-06-19 10:27:31,059 easyblock.py:4462 INFO Dumped easyblock configuremake.py required for reproduction to /dev/shm/eb-058lq0j8/reprod_20240619102731_788839/easyblocks | |
| == 2024-06-19 10:27:31,059 filetools.py:2425 INFO /apps/Common/software/EasyBuild/4.9.2/lib/python3.6/site-packages/easybuild/easyblocks/generic/cmakemake.py copied to /dev/shm/eb-058lq0j8/reprod_20240619102731_788839/easyblocks/cmakemake.py | |
| == 2024-06-19 10:27:31,059 easyblock.py:4462 INFO Dumped easyblock cmakemake.py required for reproduction to /dev/shm/eb-058lq0j8/reprod_20240619102731_788839/easyblocks | |
| == 2024-06-19 10:27:31,059 filetools.py:1912 INFO Creating directory /dev/shm/eb-058lq0j8/reprod_20240619102731_788839/hooks (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-19 10:27:31,059 filetools.py:2425 INFO /apps/c3se_hooks.py copied to /dev/shm/eb-058lq0j8/reprod_20240619102731_788839/hooks/c3se_hooks.py | |
| == 2024-06-19 10:27:31,060 easyblock.py:4494 INFO Dumped hooks file /apps/c3se_hooks.py which is (potentially) required for reproduction to /dev/shm/eb-058lq0j8/reprod_20240619102731_788839/hooks/c3se_hooks.py | |
| == 2024-06-19 10:27:31,060 easyblock.py:2236 INFO Number of iterations to perform for central part of installation procedure: 2 | |
| == 2024-06-19 10:27:31,060 build_log.py:267 INFO building and installing GDAL/3.9.0-foss-2023b... | |
| == 2024-06-19 10:27:31,063 filetools.py:2005 INFO Lock /apps/Test2/software/.locks/_apps_Test2_software_GDAL_3.9.0-foss-2023b.lock does not exist | |
| == 2024-06-19 10:27:31,063 filetools.py:1946 INFO Creating lock at /apps/Test2/software/.locks/_apps_Test2_software_GDAL_3.9.0-foss-2023b.lock... | |
| == 2024-06-19 10:27:31,064 filetools.py:1912 INFO Creating directory /apps/Test2/software/.locks/_apps_Test2_software_GDAL_3.9.0-foss-2023b.lock (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-19 10:27:31,064 filetools.py:1955 INFO Lock created: /apps/Test2/software/.locks/_apps_Test2_software_GDAL_3.9.0-foss-2023b.lock | |
| == 2024-06-19 10:27:31,064 build_log.py:267 INFO fetching files... | |
| == 2024-06-19 10:27:31,067 easyblock.py:3950 INFO Starting fetch step | |
| == 2024-06-19 10:27:31,067 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-06-19 10:27:31,068 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-19 10:27:31,068 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-19 10:27:31,068 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gdal', builddir='/dev/shm/GDAL/3.9.0/foss-2023b', cuda_cc_cmake='70;75', cuda_cc_semicolon_sep='7.0;7.5', cuda_cc_space_sep='7.0 7.5', cuda_compute_capabilities='7.0,7.5', cuda_sm_comma_sep='sm_70,sm_75', cuda_sm_space_sep='sm_70 sm_75', github_account='gdal', installdir='/apps/Test2/software/GDAL/3.9.0-foss-2023b', module_name='GDAL/3.9.0-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='GDAL', nameletter='G', nameletterlower='g', namelower='gdal', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.9.0', version_major='3', version_major_minor='3.9', version_minor='9', versionprefix='', versionsuffix='' | |
| == 2024-06-19 10:27:31,068 easyblock.py:3958 INFO Running method fetch_step part of step fetch | |
| == 2024-06-19 10:27:31,068 easyblock.py:2358 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2024-06-19 10:27:31,068 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for gdal-3.9.0.tar.xz: /dev/shm/eb-058lq0j8/files_pr20675/g/GDAL | |
| == 2024-06-19 10:27:31,068 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /apps/Common/software/EasyBuild/4.9.2/bin/eb | |
| == 2024-06-19 10:27:31,069 tools.py:288 INFO Also considering installation prefix /apps/Common/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
| == 2024-06-19 10:27:31,075 easyblock.py:851 INFO Found file gdal-3.9.0.tar.xz at /apps/sources/g/GDAL/gdal-3.9.0.tar.xz | |
| == 2024-06-19 10:27:31,075 easyblock.py:496 INFO Added sources: [{'name': 'gdal-3.9.0.tar.xz', 'path': '/apps/sources/g/GDAL/gdal-3.9.0.tar.xz', 'cmd': None, 'checksum': {'gdal-3.9.0.tar.xz': '577f80e9d14ff7c90b6bfbc34201652b4546700c01543efb4f4c3050e0b3fda2'}, 'finalpath': '/dev/shm/GDAL/3.9.0/foss-2023b'}] | |
| == 2024-06-19 10:27:31,075 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for GDAL-3.6.2_fix-python-CC-CXX.patch: /dev/shm/eb-058lq0j8/files_pr20675/g/GDAL | |
| == 2024-06-19 10:27:31,075 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /apps/Common/software/EasyBuild/4.9.2/bin/eb | |
| == 2024-06-19 10:27:31,075 tools.py:288 INFO Also considering installation prefix /apps/Common/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
| == 2024-06-19 10:27:31,075 easyblock.py:851 INFO Found file GDAL-3.6.2_fix-python-CC-CXX.patch at /dev/shm/eb-058lq0j8/files_pr20675/g/GDAL/GDAL-3.6.2_fix-python-CC-CXX.patch | |
| == 2024-06-19 10:27:31,076 easyblock.py:535 INFO Added patches: [{'name': 'GDAL-3.6.2_fix-python-CC-CXX.patch', 'postinstall': False, 'path': '/dev/shm/eb-058lq0j8/files_pr20675/g/GDAL/GDAL-3.6.2_fix-python-CC-CXX.patch', 'checksum': {'GDAL-3.6.2_fix-python-CC-CXX.patch': '859b874b0c8ff7626a76d51f008bf05b7f89a35b325bdd1d126d2364154acc63'}}] | |
| == 2024-06-19 10:27:31,095 easyblock.py:2411 INFO md5 checksum for /apps/sources/g/GDAL/gdal-3.9.0.tar.xz: 03717a7af435f89fa1e33d1c79af50dc | |
| == 2024-06-19 10:27:31,122 easyblock.py:2411 INFO sha256 checksum for /apps/sources/g/GDAL/gdal-3.9.0.tar.xz: 577f80e9d14ff7c90b6bfbc34201652b4546700c01543efb4f4c3050e0b3fda2 | |
| == 2024-06-19 10:27:31,122 easyblock.py:2411 INFO md5 checksum for /dev/shm/eb-058lq0j8/files_pr20675/g/GDAL/GDAL-3.6.2_fix-python-CC-CXX.patch: bb965e1d7624b8965f93628b79fd5cf5 | |
| == 2024-06-19 10:27:31,123 easyblock.py:2411 INFO sha256 checksum for /dev/shm/eb-058lq0j8/files_pr20675/g/GDAL/GDAL-3.6.2_fix-python-CC-CXX.patch: 859b874b0c8ff7626a76d51f008bf05b7f89a35b325bdd1d126d2364154acc63 | |
| == 2024-06-19 10:27:31,123 easyblock.py:2446 INFO Checking dirs that need to be created: ['/apps/Test2/software/GDAL/3.9.0-foss-2023b', '/apps/Test2/fmodules/all/GDAL', '/apps/Test2/fmodules/data/GDAL'] | |
| == 2024-06-19 10:27:31,123 filetools.py:1912 INFO Creating directory /apps/Test2/software/GDAL/3.9.0-foss-2023b (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-19 10:27:31,126 configuremake.py:96 INFO config.guess version: 2018-08-29 (last updated: 2024-06-13T16:09:28.808643, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c) | |
| == 2024-06-19 10:27:31,126 configuremake.py:151 INFO Found config.guess at /apps/sources/generic/eb_v4.9.2/ConfigureMake/config.guess | |
| == 2024-06-19 10:27:31,127 build_log.py:267 INFO creating build dir, resetting environment... | |
| == 2024-06-19 10:27:31,129 easyblock.py:3950 INFO Starting ready step | |
| == 2024-06-19 10:27:31,129 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-06-19 10:27:31,130 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-19 10:27:31,130 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-19 10:27:31,130 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gdal', builddir='/dev/shm/GDAL/3.9.0/foss-2023b', cuda_cc_cmake='70;75', cuda_cc_semicolon_sep='7.0;7.5', cuda_cc_space_sep='7.0 7.5', cuda_compute_capabilities='7.0,7.5', cuda_sm_comma_sep='sm_70,sm_75', cuda_sm_space_sep='sm_70 sm_75', github_account='gdal', installdir='/apps/Test2/software/GDAL/3.9.0-foss-2023b', module_name='GDAL/3.9.0-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='GDAL', nameletter='G', nameletterlower='g', namelower='gdal', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.9.0', version_major='3', version_major_minor='3.9', version_minor='9', versionprefix='', versionsuffix='' | |
| == 2024-06-19 10:27:31,130 easyblock.py:3958 INFO Running method check_readiness_step part of step ready | |
| == 2024-06-19 10:27:31,130 easyblock.py:2255 INFO Setting parallelism: 32 | |
| == 2024-06-19 10:27:31,163 easyblock.py:2307 WARNING Loaded modules detected: ['EasyBuild/4.9.2'] | |
| == 2024-06-19 10:27:31,164 easyblock.py:3958 INFO Running method make_builddir part of step ready | |
| == 2024-06-19 10:27:31,164 filetools.py:1912 INFO Creating directory /dev/shm/GDAL/3.9.0/foss-2023b (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-19 10:27:31,164 easyblock.py:3958 INFO Running method reset_env part of step ready | |
| == 2024-06-19 10:27:31,165 easyblock.py:3958 INFO Running method handle_iterate_opts part of step ready | |
| == 2024-06-19 10:27:31,165 build_log.py:267 INFO starting iteration #0 ... | |
| == 2024-06-19 10:27:31,168 easyblock.py:2195 INFO Current iteration index: 0 | |
| == 2024-06-19 10:27:31,169 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-06-19 10:27:31,169 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-19 10:27:31,169 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-19 10:27:31,169 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gdal', builddir='/dev/shm/GDAL/3.9.0/foss-2023b', cuda_cc_cmake='70;75', cuda_cc_semicolon_sep='7.0;7.5', cuda_cc_space_sep='7.0 7.5', cuda_compute_capabilities='7.0,7.5', cuda_sm_comma_sep='sm_70,sm_75', cuda_sm_space_sep='sm_70 sm_75', github_account='gdal', installdir='/apps/Test2/software/GDAL/3.9.0-foss-2023b', module_name='GDAL/3.9.0-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='GDAL', nameletter='G', nameletterlower='g', namelower='gdal', parallel='32', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.9.0', version_major='3', version_major_minor='3.9', version_minor='9', versionprefix='', versionsuffix='' | |
| == 2024-06-19 10:27:31,169 build_log.py:267 INFO unpacking... | |
| == 2024-06-19 10:27:31,172 easyblock.py:3950 INFO Starting source step | |
| == 2024-06-19 10:27:31,172 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-06-19 10:27:31,172 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-19 10:27:31,173 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-19 10:27:31,173 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gdal', builddir='/dev/shm/GDAL/3.9.0/foss-2023b', cuda_cc_cmake='70;75', cuda_cc_semicolon_sep='7.0;7.5', cuda_cc_space_sep='7.0 7.5', cuda_compute_capabilities='7.0,7.5', cuda_sm_comma_sep='sm_70,sm_75', cuda_sm_space_sep='sm_70 sm_75', github_account='gdal', installdir='/apps/Test2/software/GDAL/3.9.0-foss-2023b', module_name='GDAL/3.9.0-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='GDAL', nameletter='G', nameletterlower='g', namelower='gdal', parallel='32', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.9.0', version_major='3', version_major_minor='3.9', version_minor='9', versionprefix='', versionsuffix='' | |
| == 2024-06-19 10:27:31,173 easyblock.py:3958 INFO Running method checksum_step part of step source | |
| == 2024-06-19 10:27:31,199 easyblock.py:2464 INFO Checksum verification for /apps/sources/g/GDAL/gdal-3.9.0.tar.xz using {'gdal-3.9.0.tar.xz': '577f80e9d14ff7c90b6bfbc34201652b4546700c01543efb4f4c3050e0b3fda2'} passed. | |
| == 2024-06-19 10:27:31,199 easyblock.py:2464 INFO Checksum verification for /dev/shm/eb-058lq0j8/files_pr20675/g/GDAL/GDAL-3.6.2_fix-python-CC-CXX.patch using {'GDAL-3.6.2_fix-python-CC-CXX.patch': '859b874b0c8ff7626a76d51f008bf05b7f89a35b325bdd1d126d2364154acc63'} passed. | |
| == 2024-06-19 10:27:31,200 easyblock.py:3958 INFO Running method extract_step part of step source | |
| == 2024-06-19 10:27:31,200 easyblock.py:2576 INFO Unpacking source gdal-3.9.0.tar.xz | |
| == 2024-06-19 10:27:31,200 run.py:247 INFO running cmd: unset TAPE; unxz /apps/sources/g/GDAL/gdal-3.9.0.tar.xz --stdout | tar x | |
| == 2024-06-19 10:27:31,911 build_log.py:267 INFO patching... | |
| == 2024-06-19 10:27:31,914 easyblock.py:3950 INFO Starting patch step | |
| == 2024-06-19 10:27:31,914 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-06-19 10:27:31,915 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-19 10:27:31,915 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-19 10:27:31,915 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gdal', builddir='/dev/shm/GDAL/3.9.0/foss-2023b', cuda_cc_cmake='70;75', cuda_cc_semicolon_sep='7.0;7.5', cuda_cc_space_sep='7.0 7.5', cuda_compute_capabilities='7.0,7.5', cuda_sm_comma_sep='sm_70,sm_75', cuda_sm_space_sep='sm_70 sm_75', github_account='gdal', installdir='/apps/Test2/software/GDAL/3.9.0-foss-2023b', module_name='GDAL/3.9.0-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='GDAL', nameletter='G', nameletterlower='g', namelower='gdal', parallel='32', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.9.0', version_major='3', version_major_minor='3.9', version_minor='9', versionprefix='', versionsuffix='' | |
| == 2024-06-19 10:27:31,915 easyblock.py:3958 INFO Running method patch_step part of step patch | |
| == 2024-06-19 10:27:31,915 easyblock.py:2594 INFO Applying patch GDAL-3.6.2_fix-python-CC-CXX.patch | |
| == 2024-06-19 10:27:31,916 run.py:247 INFO running cmd: patch -p1 -i /dev/shm/eb-058lq0j8/files_pr20675/g/GDAL/GDAL-3.6.2_fix-python-CC-CXX.patch | |
| == 2024-06-19 10:27:31,922 build_log.py:267 INFO preparing... | |
| == 2024-06-19 10:27:31,926 easyblock.py:3950 INFO Starting prepare step | |
| == 2024-06-19 10:27:31,926 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-06-19 10:27:31,926 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-19 10:27:31,926 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-19 10:27:31,926 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gdal', builddir='/dev/shm/GDAL/3.9.0/foss-2023b', cuda_cc_cmake='70;75', cuda_cc_semicolon_sep='7.0;7.5', cuda_cc_space_sep='7.0 7.5', cuda_compute_capabilities='7.0,7.5', cuda_sm_comma_sep='sm_70,sm_75', cuda_sm_space_sep='sm_70 sm_75', github_account='gdal', installdir='/apps/Test2/software/GDAL/3.9.0-foss-2023b', module_name='GDAL/3.9.0-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='GDAL', nameletter='G', nameletterlower='g', namelower='gdal', parallel='32', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.9.0', version_major='3', version_major_minor='3.9', version_minor='9', versionprefix='', versionsuffix='' | |
| == 2024-06-19 10:27:31,927 easyblock.py:3958 INFO Running method prepare_step part of step prepare | |
| == 2024-06-19 10:27:32,204 modules.py:628 INFO Checking whether CMake/3.27.6-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,204 modules.py:633 INFO Module CMake/3.27.6-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,204 modules.py:656 INFO Result for existence check of CMake/3.27.6-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,204 modules.py:628 INFO Checking whether pkgconf/2.0.3-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,204 modules.py:633 INFO Module pkgconf/2.0.3-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,205 modules.py:656 INFO Result for existence check of pkgconf/2.0.3-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,205 modules.py:628 INFO Checking whether Bison/3.8.2-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,205 modules.py:633 INFO Module Bison/3.8.2-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,205 modules.py:656 INFO Result for existence check of Bison/3.8.2-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,205 modules.py:628 INFO Checking whether Python/3.11.5-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,205 modules.py:633 INFO Module Python/3.11.5-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,205 modules.py:656 INFO Result for existence check of Python/3.11.5-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,205 modules.py:628 INFO Checking whether netCDF/4.9.2-gompi-2023b exists... | |
| == 2024-06-19 10:27:32,205 modules.py:633 INFO Module netCDF/4.9.2-gompi-2023b exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,205 modules.py:656 INFO Result for existence check of netCDF/4.9.2-gompi-2023b module: True | |
| == 2024-06-19 10:27:32,205 modules.py:628 INFO Checking whether expat/2.5.0-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,205 modules.py:633 INFO Module expat/2.5.0-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,205 modules.py:656 INFO Result for existence check of expat/2.5.0-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,205 modules.py:628 INFO Checking whether GEOS/3.12.1-GCC-13.2.0 exists... | |
| == 2024-06-19 10:27:32,205 modules.py:633 INFO Module GEOS/3.12.1-GCC-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,205 modules.py:656 INFO Result for existence check of GEOS/3.12.1-GCC-13.2.0 module: True | |
| == 2024-06-19 10:27:32,205 modules.py:628 INFO Checking whether SQLite/3.43.1-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,205 modules.py:633 INFO Module SQLite/3.43.1-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,205 modules.py:656 INFO Result for existence check of SQLite/3.43.1-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,206 modules.py:628 INFO Checking whether libarchive/3.7.2-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,206 modules.py:633 INFO Module libarchive/3.7.2-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,206 modules.py:656 INFO Result for existence check of libarchive/3.7.2-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,206 modules.py:628 INFO Checking whether libxml2/2.11.5-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,206 modules.py:633 INFO Module libxml2/2.11.5-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,206 modules.py:656 INFO Result for existence check of libxml2/2.11.5-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,206 modules.py:628 INFO Checking whether libpng/1.6.40-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,206 modules.py:633 INFO Module libpng/1.6.40-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,206 modules.py:656 INFO Result for existence check of libpng/1.6.40-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,206 modules.py:628 INFO Checking whether libjpeg-turbo/3.0.1-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,206 modules.py:633 INFO Module libjpeg-turbo/3.0.1-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,206 modules.py:656 INFO Result for existence check of libjpeg-turbo/3.0.1-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,206 modules.py:628 INFO Checking whether LibTIFF/4.6.0-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,206 modules.py:633 INFO Module LibTIFF/4.6.0-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,206 modules.py:656 INFO Result for existence check of LibTIFF/4.6.0-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,206 modules.py:628 INFO Checking whether zlib/1.2.13-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,206 modules.py:633 INFO Module zlib/1.2.13-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,206 modules.py:656 INFO Result for existence check of zlib/1.2.13-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,207 modules.py:628 INFO Checking whether cURL/8.3.0-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,207 modules.py:633 INFO Module cURL/8.3.0-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,207 modules.py:656 INFO Result for existence check of cURL/8.3.0-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,207 modules.py:628 INFO Checking whether PCRE/8.45-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,207 modules.py:633 INFO Module PCRE/8.45-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,207 modules.py:656 INFO Result for existence check of PCRE/8.45-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,207 modules.py:628 INFO Checking whether PROJ/9.3.1-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,207 modules.py:633 INFO Module PROJ/9.3.1-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,207 modules.py:656 INFO Result for existence check of PROJ/9.3.1-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,207 modules.py:628 INFO Checking whether libgeotiff/1.7.3-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,207 modules.py:633 INFO Module libgeotiff/1.7.3-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,207 modules.py:656 INFO Result for existence check of libgeotiff/1.7.3-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,207 modules.py:628 INFO Checking whether SciPy-bundle/2023.11-gfbf-2023b exists... | |
| == 2024-06-19 10:27:32,207 modules.py:633 INFO Module SciPy-bundle/2023.11-gfbf-2023b exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,207 modules.py:656 INFO Result for existence check of SciPy-bundle/2023.11-gfbf-2023b module: True | |
| == 2024-06-19 10:27:32,207 modules.py:628 INFO Checking whether HDF5/1.14.3-gompi-2023b exists... | |
| == 2024-06-19 10:27:32,207 modules.py:633 INFO Module HDF5/1.14.3-gompi-2023b exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,207 modules.py:656 INFO Result for existence check of HDF5/1.14.3-gompi-2023b module: True | |
| == 2024-06-19 10:27:32,207 modules.py:628 INFO Checking whether HDF/4.2.16-2-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,208 modules.py:633 INFO Module HDF/4.2.16-2-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,208 modules.py:656 INFO Result for existence check of HDF/4.2.16-2-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,208 modules.py:628 INFO Checking whether Armadillo/12.8.0-foss-2023b exists... | |
| == 2024-06-19 10:27:32,208 modules.py:633 INFO Module Armadillo/12.8.0-foss-2023b exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,208 modules.py:656 INFO Result for existence check of Armadillo/12.8.0-foss-2023b module: True | |
| == 2024-06-19 10:27:32,208 modules.py:628 INFO Checking whether CFITSIO/4.3.1-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,208 modules.py:633 INFO Module CFITSIO/4.3.1-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,208 modules.py:656 INFO Result for existence check of CFITSIO/4.3.1-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,208 modules.py:628 INFO Checking whether zstd/1.5.5-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,208 modules.py:633 INFO Module zstd/1.5.5-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,208 modules.py:656 INFO Result for existence check of zstd/1.5.5-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,208 modules.py:628 INFO Checking whether giflib/5.2.1-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,208 modules.py:633 INFO Module giflib/5.2.1-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,208 modules.py:656 INFO Result for existence check of giflib/5.2.1-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,208 modules.py:628 INFO Checking whether json-c/0.17-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,208 modules.py:633 INFO Module json-c/0.17-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,208 modules.py:656 INFO Result for existence check of json-c/0.17-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,208 modules.py:628 INFO Checking whether Xerces-C++/3.2.5-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,208 modules.py:633 INFO Module Xerces-C++/3.2.5-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,209 modules.py:656 INFO Result for existence check of Xerces-C++/3.2.5-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,209 modules.py:628 INFO Checking whether PCRE2/10.42-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,209 modules.py:633 INFO Module PCRE2/10.42-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,209 modules.py:656 INFO Result for existence check of PCRE2/10.42-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,209 modules.py:628 INFO Checking whether OpenEXR/3.2.0-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,209 modules.py:633 INFO Module OpenEXR/3.2.0-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,209 modules.py:656 INFO Result for existence check of OpenEXR/3.2.0-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,209 modules.py:628 INFO Checking whether Brunsli/0.1-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,209 modules.py:636 INFO Module Brunsli/0.1-GCCcore-13.2.0 not found in list of available modules, checking via 'module show'... | |
| == 2024-06-19 10:27:32,433 modules.py:649 INFO Module Brunsli/0.1-GCCcore-13.2.0 not found via module avail/show, checking whether it is a wrapper | |
| == 2024-06-19 10:27:32,434 modules.py:656 INFO Result for existence check of Brunsli/0.1-GCCcore-13.2.0 module: False | |
| == 2024-06-19 10:27:32,434 modules.py:628 INFO Checking whether Qhull/2020.2-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,434 modules.py:633 INFO Module Qhull/2020.2-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,434 modules.py:656 INFO Result for existence check of Qhull/2020.2-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,434 modules.py:628 INFO Checking whether LERC/4.0.0-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,434 modules.py:633 INFO Module LERC/4.0.0-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,434 modules.py:656 INFO Result for existence check of LERC/4.0.0-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,435 modules.py:628 INFO Checking whether OpenJPEG/2.5.0-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,435 modules.py:633 INFO Module OpenJPEG/2.5.0-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,435 modules.py:656 INFO Result for existence check of OpenJPEG/2.5.0-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,435 modules.py:628 INFO Checking whether SWIG/4.1.1-GCCcore-13.2.0 exists... | |
| == 2024-06-19 10:27:32,435 modules.py:633 INFO Module SWIG/4.1.1-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-06-19 10:27:32,435 modules.py:656 INFO Result for existence check of SWIG/4.1.1-GCCcore-13.2.0 module: True | |
| == 2024-06-19 10:27:32,469 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): Missing modules for dependencies (use --robot?): Brunsli/0.1-GCCcore-13.2.0 (at easybuild/tools/toolchain/toolchain.py:563 in _check_dependencies) | |
| == 2024-06-19 10:27:32,470 filetools.py:2013 INFO Removing lock /apps/Test2/software/.locks/_apps_Test2_software_GDAL_3.9.0-foss-2023b.lock... | |
| == 2024-06-19 10:27:32,474 filetools.py:383 INFO Path /apps/Test2/software/.locks/_apps_Test2_software_GDAL_3.9.0-foss-2023b.lock successfully removed. | |
| == 2024-06-19 10:27:32,474 filetools.py:2017 INFO Lock removed: /apps/Test2/software/.locks/_apps_Test2_software_GDAL_3.9.0-foss-2023b.lock | |
| == 2024-06-19 10:27:32,475 easyblock.py:4285 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): Brunsli/0.1-GCCcore-13.2.0 | |
| == 2024-06-19 10:27:32,475 easyblock.py:328 INFO Closing log for application name GDAL version 3.9.0 |
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