Mike Dacre MikeDacre
MikeDacre
/ tmux-server-12371.log
Created
July 23, 2015 18:23
tmux -vvvv server log output for Arch Linux machine; fails to execute tpm
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| server started, pid 12371 | |
| cmdq 0x1b73ce0: bind-key C-b send-prefix (client -1) | |
| cmdq 0x1b73ce0: bind-key C-o rotate-window (client -1) | |
| cmdq 0x1b73ce0: bind-key C-z suspend-client (client -1) | |
| cmdq 0x1b73ce0: bind-key Space next-layout (client -1) | |
| cmdq 0x1b73ce0: bind-key ! break-pane (client -1) | |
| cmdq 0x1b73ce0: bind-key " split-window (client -1) | |
| cmdq 0x1b73ce0: bind-key # list-buffers (client -1) | |
| cmdq 0x1b73ce0: bind-key $ command-prompt -I#S "rename-session '%%'" (client -1) | |
| cmdq 0x1b73ce0: bind-key % split-window -h (client -1) |
MikeDacre
/ tmux-server.diff
Created
July 23, 2015 18:33
Diff of https://gist.github.com/MikeDacre/f437480f43f741c1413b and https://gist.github.com/MikeDacre/66de259f2a18c42785a0
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| 1,74c1,74 | |
| < server started, pid 12371 | |
| < cmdq 0x1b73ce0: bind-key C-b send-prefix (client -1) | |
| < cmdq 0x1b73ce0: bind-key C-o rotate-window (client -1) | |
| < cmdq 0x1b73ce0: bind-key C-z suspend-client (client -1) | |
| < cmdq 0x1b73ce0: bind-key Space next-layout (client -1) | |
| < cmdq 0x1b73ce0: bind-key ! break-pane (client -1) | |
| < cmdq 0x1b73ce0: bind-key " split-window (client -1) | |
| < cmdq 0x1b73ce0: bind-key # list-buffers (client -1) | |
| < cmdq 0x1b73ce0: bind-key $ command-prompt -I#S "rename-session '%%'" (client -1) |
MikeDacre
/ tmux-server-filtered.diff
Last active
August 29, 2015 14:25
Diff of functioning and nonfunctioning tpm tmux server logs. Left file (>) is functional, right file (<) is not
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| 75c75 | |
| < cmdq set-option -g default-shell /usr/bin/zsh (client -1) | |
| --- | |
| > cmdq set-option -g default-shell /afs/ir/users/d/a/dacre/usr/bin/zsh (client -1) | |
| 113c113 | |
| < cmdq set-environment -g TMUX_PLUGIN_MANAGER_PATH /home/dacre/.tmux/plugins/ (client 11) | |
| --- | |
| > cmdq set-environment -g TMUX_PLUGIN_MANAGER_PATH /afs/ir/users/d/a/dacre/.tmux/plugins/ (client 11) | |
| 115c115 | |
| < cmdq bind-key I run-shell /home/dacre/.tmux/plugins/tpm/scripts/install_plugins.sh >/dev/null 2>&1 (client 11) |
MikeDacre
/ nicstat-PKGBUILD.patch
Created
August 11, 2015 18:02
Patch for nicstat PKGBUILD from version 1.92 to 1.95
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| --- nicstat/PKGBUILD 2015-06-14 06:52:34.000000000 -0700 | |
| +++ PKGBUILD 2015-08-11 10:56:27.331639326 -0700 | |
| @@ -3,7 +3,7 @@ | |
| # vim:set ts=2 sw=2 et ft=sh tw=100: expandtab | |
| pkgname=nicstat | |
| -pkgver=1.92 | |
| +pkgver=1.95 | |
| pkgrel=3 | |
| pkgdesc='Network traffic statics utility' |
MikeDacre
/ change_indent_length.py
Created
December 11, 2012 19:01
Change number of spaces used for indentation in a file, only change spaces at start of file. Made for python, will work with any file.
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| #!/bin/env python3 | |
| #=============================================================================== | |
| # | |
| # FILE: change_indent_length.py | |
| # | |
| # USAGE: cange_indent_length.py [-h] file_name old_tab_length new_tab_length | |
| # | |
| # DESCRIPTION: Change indent length, only change those at start of line | |
| # | |
| # AUTHOR: Michael D Dacre, mike.dacre@gmail.com |
MikeDacre
/ selective-backup.py
Last active
December 14, 2015 07:48
A simple backup program to create a selective backup by duplicating a directory tree with hard links. This allows users to choose only the files they wish backed up. It requires a third party backup solution (e.g. rsync or CrashPlan), to do the actual backup. The script allows users to choose the backup location, and also uses `find` to search t…
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| #!/bin/env python3 | |
| dsript="""\ | |
| #=============================================================================== | |
| # | |
| # FILE: selective-backup.py | |
| # | |
| # USAGE: ./selective-backup.py [-o] [-l] [-r] file1 [file2]...[folder1... | |
| # | |
| # DESCRIPTION: Duplicate a directory to a given location using only hard links | |
| # REQUIREMENTS: python3 |
MikeDacre
/ format_alleleseq_output.py
Created
December 15, 2015 01:08
Format the output of the alleleseq pipeline into gene and snp level tab-delimited outputs sorted by tissue
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| #!/usr/bin/env python3 | |
| # -*- coding: utf-8 -*- | |
| # vim:fenc=utf-8 tabstop=4 expandtab shiftwidth=4 softtabstop=4 | |
| """ | |
| #============================================================================# | |
| # # | |
| # AUTHOR: Michael D Dacre, mike.dacre@gmail.com # | |
| # ORGANIZATION: Stanford University # | |
| # LICENSE: MIT License, property of Stanford, use as you wish # | |
| # CREATED: 2015-12-13 10:07 # |
MikeDacre
/ std-arg.py
Last active
December 21, 2015 17:59
Cumbersome python3 functions to give user the choice between either using STDIN, STDOUT, STDERR, or using -i, -o, and -l. The idea is that we want to use the protection of a `with"` statement if using the '-i' and '-o' flags for input and output files, while still allowing the use of STDIN and STDERR. It makes use of sys and argparse. It is cumb…
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| #!/usr/bin/env python3 | |
| # -*- coding: utf-8 -*- | |
| # vim:fenc=utf-8 tabstop=4 expandtab shiftwidth=4 softtabstop=4 | |
| """ | |
| #==================================================================================== | |
| # | |
| # FILE: std-arg.py | |
| # AUTHOR: Michael D Dacre, mike.dacre@gmail.com | |
| # LICENSE: Open Source | |
| # CREATED: 2013-08-26 10:56 |
MikeDacre
/ vcf_simplify.py
Last active
January 4, 2016 04:28
Simplify a 1000genomes vcf file to a smaller file with all genotypes encoded as 0/1/2, where 0: homozygote 1; 1: heterozygote; 2:homozygote 2
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| #!/usr/bin/env python3 | |
| # -*- coding: utf-8 -*- | |
| # vim:fenc=utf-8 tabstop=4 expandtab shiftwidth=4 softtabstop=4 | |
| # | |
| # Copyright © Mike Dacre <mike.dacre@gmail.com> | |
| # | |
| # Distributed under terms of the MIT license | |
| """ | |
| =============================================================================== |
MikeDacre
/ bed2vcf.py
Last active
January 8, 2016 21:29
Convert simplified bed file(s) plus a reference genome into a vcf file. Formats in source.
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| #!/usr/bin/env python3 | |
| # -*- coding: utf-8 -*- | |
| # Distributed under terms of the MIT license | |
| """ | |
| ================================================================================ | |
| FILE: bed2vcf (python 3) | |
| AUTHOR: Michael D Dacre, mike.dacre@gmail.com | |
| ORGANIZATION: Stanford University | |
| LICENSE: MIT License, Property of Stanford, Use as you wish |