ckandoth

Use apt to install the necessary packages:

sudo apt install -y slurm-wlm slurm-wlm-doc

Load file:///usr/share/doc/slurm-wlm/html/configurator.html in a browser (or file://wsl%24/Ubuntu/usr/share/doc/slurm-wlm/html/configurator.html on WSL2), and:

1. Set your machine's hostname in SlurmctldHost and NodeName.
2. Set CPUs as appropriate, and optionally Sockets, CoresPerSocket, and ThreadsPerCore. Use command lscpu to find what you have.
3. Set RealMemory to the number of megabytes you want to allocate to Slurm jobs,
4. Set StateSaveLocation to /var/spool/slurm-llnl.
5. Set ProctrackType to linuxproc because processes are less likely to escape Slurm control on a single machine config.

sirselim

Jetson Xavier basecalling notes

initial basecalling runs

'fast' flip-flop calling on the Jetson Xavier

guppy_basecaller --disable_pings --compress_fastq -c dna_r9.4.1_450bps_fast.cfg -i flongle_fast5_pass/ -s flongle_test2 -x 'auto' --recursive 

allenyllee

#!/bin/bash

# install qemu utils
sudo apt install qemu-utils

# install nbd client
sudo apt install nbd-client

msrose

Combining two git repositories

Use case: You have repository A with remote location rA, and repository B (which may or may not have remote location rB). You want to do one of two things:

• preserve all commits of both repositories, but replace everything from A with the contents of B, and use rA as your remote location
• actually combine the two repositories, as if they are two branches that you want to merge, using rA as the remote location

NB: Check out git subtree/git submodule and this Stack Overflow question before going through the steps below. This gist is just a record of how I solved this problem on my own one day.

Before starting, make sure your local and remote repositories are up-to-date with all changes you need. The following steps use the general idea of changing the remote origin and renaming the local master branch of one of the repos in order to combine the two master branches.