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Miserlou/knn.txt

Created February 22, 2019 04:50
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Various kNNs
Raw
knn.txt
$ p cluster.py
Loading data..
Loading metadata..
All data loaded..
Clustering and imputing metadata field: refinebio_accession_code
Mapped strings to integers:
{2049: 'E-TABM-105-High_24h_1_H1_75-59', 2050: 'E-TABM-105-High_24h_4_E2_75-59', 2055: 'E-TABM-105-High_24h_2_G7_75-59', 2056: 'E-TABM-105-High_24h_5_D8_75-59', 2057: 'E-TABM-105-High_24h_3_G8_75-59', 2065: 'E-MEXP-818-H_GFP and BSA set1', 2066: 'E-MEXP-818-H_GFP and BSA set2', 2070: 'E-TABM-105-Ctrl_24h_2_G1_75-59', 2071: 'E-MTAB-5850-tre-sib-heart-1', 2072: 'E-MTAB-5850-tre-sib-heart-2', 2073: 'E-TABM-105-Ctrl_24h_1_F6_75-59', 2078: 'E-TABM-105-Ctrl_24h_5_H5_75-59', 2083: 'E-MTAB-2906-Zeb_Liv_Ac_Up_1', 2084: 'E-MTAB-2906-Zeb_Liv_Ac_Up_2', 2085: 'E-MTAB-2906-Zeb_Liv_Ac_Up_3', 2103: 'E-TABM-105-High_168h_1_D2_75-59', 2107: 'E-TABM-105-High_168h_4_C4_75-59', 2108: 'E-TABM-105-High_168h_2_B8_75-59', 2110: 'E-TABM-105-High_168h_3_H3_75-59', 2114: 'E-TABM-105-High_168h_5_G6_75-59', 2118: 'E-MEXP-818-H_GFP and FGF8 set1', 2119: 'E-MEXP-818-H_GFP and FGF8 set2', 2123: 'E-TABM-105-Ctrl_168h_1_C2_75-59', 2127: 'E-TABM-105-Ctrl_168h_3_B5_75-59', 2130: 'E-TABM-105-Ctrl_168h_2_E6_75-59', 2131: 'E-TABM-105-Ctrl_168h_5_D5_75-59', 2132: 'E-TABM-105-Ctrl_168h_4_G4_75-59', 2140: 'E-MTAB-5406-30WT1a_Zebrafish', 2141: 'E-MTAB-5406-30WT1b_Zebrafish', 2142: 'E-MTAB-5406-30WT1c_Zebrafish', 2194: 'E-MTAB-1996-Hyb_morpholino', 2199: 'E-MEXP-818-H_VHNF1 and BSA set1', 2200: 'E-MEXP-818-H_VHNF1 and BSA set2', 2211: 'E-MTAB-5406-30POS1a_Zebrafish', 2212: 'E-MTAB-5406-30POS1b_Zebrafish', 2213: 'E-MTAB-5406-30POS1c_Zebrafish', 2239: 'E-TABM-354-Lange_DPF3_mor1.CEL', 2240: 'E-TABM-354-Lange_DPF3_mor2.CEL', 2253: 'E-MEXP-818-H_VHNF1 and FGF8 set2', 2291: 'E-MTAB-2906-Zeb_Liv_Ac_Ctrl_1', 2292: 'E-MTAB-2906-Zeb_Liv_Ac_Ctrl_2', 2293: 'E-MTAB-2906-Zeb_Liv_Ac_Ctrl_3', 2294: 'E-MTAB-2906-Zeb_Liv_Ac_Down_1', 2295: 'E-MTAB-2906-Zeb_Liv_Ac_Down_2', 2296: 'E-MTAB-2906-Zeb_Liv_Ac_Down_3', 2487: 'E-MTAB-2207-setdb2 morpholino 1', 2490: 'E-MTAB-2207-setdb2 morpholino 4', 486: 'GSM85200', 487: 'GSM85201', 488: 'GSM33614', 489: 'GSM85203', 490: 'GSM74260', 491: 'GSM74261', 492: 'GSM35850', 493: 'GSM35851', 494: 'GSM74264', 495: 'GSM85191', 496: 'GSM74284', 497: 'GSM95615', 498: 'GSM95616', 499: 'GSM95617', 500: 'GSM35849', 501: 'GSM95619', 502: 'GSM85189', 503: 'GSM85199', 631: 'SRR3579897', 527: 'GSM130400', 528: 'GSM300510', 529: 'GSM300511', 530: 'GSM300512', 531: 'GSM112800', 532: 'GSM362020', 533: 'GSM362021', 534: 'GSM300516', 535: 'GSM300517', 536: 'GSM442133', 537: 'GSM442134', 538: 'GSM442135', 539: 'GSM303581', 540: 'GSM449031', 541: 'GSM306850', 542: 'GSM419450', 543: 'GSM449025', 544: 'GSM224809', 545: 'GSM449027', 546: 'GSM209538', 547: 'GSM449029', 548: 'GSM479027', 549: 'GSM479028', 550: 'GSM978331', 551: 'GSM978332', 552: 'GSM978333', 553: 'GSM336949', 554: 'GSM978335', 555: 'GSM787284', 556: 'GSM787285', 557: 'GSM466796', 558: 'ERR977590', 559: 'ERR977591', 560: 'SRR519721', 561: 'SRR535850', 562: 'SRR835164', 563: 'SRR527833', 564: 'SRR941753', 565: 'SRR835158', 566: 'SRR363982', 567: 'SRR850595', 568: 'SRR578922', 569: 'SRR519748', 570: 'SRR519749', 571: 'SRR535986', 572: 'SRR886456', 573: 'SRR392987', 574: 'SRR797916', 575: 'SRR489487', 576: 'SRR797918', 577: 'SRR489489', 578: 'GSM1032221', 579: 'GSM1032222', 580: 'ERR1410203', 581: 'GSM1032215', 582: 'ERR1410214', 583: 'GSM1340350', 584: 'ERR1410216', 585: 'ERR1410217', 586: 'GSM1340434', 587: 'GSM2027270', 588: 'GSM1340319', 589: 'GSM1143643', 590: 'GSM2027273', 591: 'GSM1716333', 592: 'GSM1716334', 593: 'GSM2736053', 594: 'GSM2736054', 595: 'GSM2736055', 596: 'GSM1556318', 597: 'ERR1730809', 598: 'SRR2751000', 599: 'GSM2477651', 600: 'ERR1730776', 601: 'GSM1953835', 602: 'ERR1396950', 603: 'ERR1396951', 604: 'ERR1396952', 605: 'ERR1396953', 606: 'ERR1396954', 607: 'ERR1396955', 608: 'ERR1396956', 609: 'ERR1396957', 610: 'ERR1396958', 611: 'SRR5482153', 612: 'SRR6416903', 613: 'SRR3159075', 614: 'SRR3465553', 615: 'SRR3159077', 616: 'SRR5163828', 617: 'SRR2927824', 618: 'SRR3083696', 619: 'SRR5342796', 620: 'SRR1039879', 621: 'SRR5519774', 622: 'SRR6072798', 623: 'SRR3086887', 624: 'SRR2750999', 625: 'SRR3679548', 626: 'SRR6652897', 627: 'SRR5599691', 628: 'SRR6652899', 629: 'SRR3579895', 630: 'SRR3579896', 2679: 'E-MTAB-2207-control morpholino 4', 632: 'SRR3579898', 633: 'SRR5599697', 635: 'SRR5599699', 2929: 'E-MEXP-758-H_body 73hpf TCDD rep1_hyb1', 2930: 'E-MEXP-758-H_body 74hpf TCDD rep1_hyb1', 2931: 'E-MEXP-758-H_body 73hpf TCDD rep2_hyb2', 2932: 'E-MEXP-758-H_body 76hpf TCDD rep1_hyb1', 2933: 'E-MEXP-758-H_body 73hpf TCDD rep3_hyb3', 2934: 'E-MEXP-758-H_body 74hpf TCDD rep3_hyb3', 2935: 'E-MEXP-758-H_body 84hpf TCDD rep3_hyb3', 2936: 'E-MEXP-758-H_body 76hpf TCDD rep3_hyb3', 2949: 'E-MEXP-758-H_body 73hpf DMSO rep1_hyb1', 2950: 'E-MEXP-758-H_body 74hpf DMSO rep1_hyb1', 2951: 'E-MEXP-758-H_body 73hpf DMSO rep2_hyb2', 2952: 'E-MEXP-758-H_body 76hpf DMSO rep1_hyb1', 2953: 'E-MEXP-758-H_body 73hpf DMSO rep3_hyb3', 2954: 'E-MEXP-758-H_body 74hpf DMSO rep3_hyb3', 2955: 'E-MEXP-758-H_body 84hpf DMSO rep3_hyb3', 2956: 'E-MEXP-758-H_body 76hpf DMSO rep3_hyb3', 923: 'E-MEXP-405-HS01', 924: 'E-MEXP-405-HS02', 925: 'E-MEXP-405-HS03', 926: 'E-MEXP-405-HS04', 3006: 'E-MEXP-758-heart 73hpf TCDD rep1 block6', 3007: 'E-MEXP-758-heart 74hpf TCDD rep1 block6', 3008: 'E-MEXP-758-heart 74hpf TCDD rep2 block6', 3009: 'E-MEXP-758-heart 84hpf TCDD rep2 block6', 3010: 'E-MEXP-758-heart 76hpf TCDD rep2 block6', 3011: 'E-MEXP-758-heart 76hpf TCDD rep3 block6', 3026: 'E-MEXP-758-heart 73hpf DMSO rep1 block6', 3027: 'E-MEXP-758-heart 74hpf DMSO rep1 block6', 3028: 'E-MEXP-758-heart 74hpf DMSO rep2 block6', 3029: 'E-MEXP-758-heart 74hpf DMSO rep3 block6', 3030: 'E-MEXP-758-heart 84hpf DMSO rep3 block6', 3031: 'E-MEXP-758-heart 76hpf DMSO rep3 block6', 1030: 'E-MTAB-406-Dre10', 1031: 'E-MTAB-406-Dre20', 1032: 'E-MTAB-406-Dre12', 1033: 'E-MTAB-406-Dre04', 1034: 'E-MTAB-406-Dre14', 1035: 'E-MTAB-406-Dre15', 1036: 'E-MTAB-406-Dre07', 1037: 'E-MTAB-406-Dre17', 1038: 'E-MTAB-406-Dre18', 1039: 'E-MTAB-406-Dre19', 1051: 'E-MTAB-494-AB-G5-1', 1052: 'E-MTAB-494-AB-G5-2', 1053: 'E-MTAB-494-AB-G5-3', 5167: 'E-MEXP-171-Danio rerio__ebi.ac.uk:MIAMExpress:BioSource:181320', 5169: 'E-MEXP-171-Danio rerio__ebi.ac.uk:MIAMExpress:BioSource:181322', 5170: 'E-MEXP-171-Danio rerio__ebi.ac.uk:MIAMExpress:BioSource:181323', 5171: 'E-MEXP-171-Danio rerio__ebi.ac.uk:MIAMExpress:BioSource:181324', 5172: 'E-MEXP-171-Danio rerio__ebi.ac.uk:MIAMExpress:BioSource:181325', 5173: 'E-MEXP-171-Danio rerio__ebi.ac.uk:MIAMExpress:BioSource:181326', 5174: 'E-MEXP-171-Danio rerio__ebi.ac.uk:MIAMExpress:BioSource:181327', 5175: 'E-MEXP-171-Danio rerio__ebi.ac.uk:MIAMExpress:BioSource:181319', 1150: 'E-MTAB-1476-101642-01', 1151: 'E-MTAB-1476-101642-20', 1153: 'E-MTAB-1476-101642-31', 1154: 'E-MTAB-1476-101642-05', 1155: 'E-MTAB-1476-101642-51', 1156: 'E-MTAB-1476-101642-34', 1157: 'E-MTAB-1476-101642-17', 1158: 'E-MTAB-1476-101642-18', 1159: 'E-MTAB-1476-101642-73', 1160: 'E-MTAB-1476-101642-47', 1161: 'E-MTAB-1476-101642-57', 1162: 'E-MTAB-1476-101642-76', 1163: 'E-MTAB-1476-101642-68', 1164: 'E-MTAB-1476-101642-96', 1166: 'E-MTAB-1476-101642-89', 1219: 'E-MEXP-736-H_zHS10', 1220: 'E-MEXP-736-H_zHS20', 1221: 'E-MEXP-736-H_zHS12', 1222: 'E-MEXP-736-H_zHS13', 1223: 'E-MEXP-736-H_zHS23', 1224: 'E-MEXP-736-H_zHS15', 1225: 'E-MEXP-736-H_zHS16', 1227: 'E-MEXP-736-H_zHS09', 1228: 'E-MEXP-736-H_zHS19', 1247: 'E-MEXP-818-H_LABEL1', 1270: 'E-MTAB-6548-MO1.cel', 1271: 'E-MTAB-6548-MO2.cel', 1272: 'E-MTAB-6548-MO3.cel', 1273: 'E-MTAB-6548-MO4.cel', 1274: 'E-MEXP-737-H_zHS241', 1275: 'E-MEXP-737-H_zHS242', 1279: 'E-MTAB-6548-RS1.cel', 1280: 'E-MTAB-6548-RS2.cel', 1281: 'E-MTAB-6548-RS3.cel', 1282: 'E-MTAB-6548-RS4.cel', 1408: 'E-MTAB-381-clp-d-1h-1', 1409: 'E-MTAB-381-clp-d-1h-2', 1410: 'E-MTAB-381-clp-d-3h-1', 1411: 'E-MTAB-381-clp-d-3h-2', 1412: 'E-MTAB-381-clp-d-3h-3', 1413: 'E-MTAB-381-hlp-d-1h-1', 1414: 'E-MTAB-381-hlp-d-1h-2', 1415: 'E-MTAB-381-hlp-d-3h-1', 1416: 'E-MTAB-381-hlp-d-3h-2', 1417: 'E-MTAB-381-clp-l-1h-2', 1418: 'E-MTAB-381-clp-l-3h-1', 1419: 'E-MTAB-381-clp-l-3h-2', 1420: 'E-MTAB-381-clp-l-3h-3', 1421: 'E-MTAB-381-llp-d-3h-3', 1422: 'E-MTAB-381-hlp-l-1h-2', 1423: 'E-MTAB-381-hlp-l-3h-1', 1424: 'E-MTAB-381-hlp-l-3h-2', 1425: 'E-MTAB-381-hlp-l-3h-3', 1426: 'E-MTAB-381-llp-l-1h-2', 1427: 'E-MTAB-381-llp-l-3h-1', 1428: 'E-MTAB-381-llp-l-3h-2', 1429: 'E-MTAB-381-llp-l-3h-3', 1488: 'E-TABM-33-PBA: Tue-1c-1', 1489: 'E-TABM-33-PBA: Tue-1c-2', 1492: 'E-TABM-33-PBA: Tue-4d-1', 1493: 'E-TABM-33-PBA: Tue-5d-1', 1494: 'E-TABM-33-PBA: Tue-5d-2', 1498: 'E-TABM-33-PBA: Tue-6h-1', 1499: 'E-TABM-33-PBA: Tue-6h-2', 1500: 'E-TABM-33-PBA: Tue-8h-1', 1501: 'E-TABM-33-PBA: Tue-8h-2', 1502: 'E-TABM-33-PBA: Tue-9h-2', 1510: 'E-MTAB-381-hlp-d-1h-3-2', 1518: 'E-MTAB-381-hlp-l-1h-3-2', 1533: 'E-MTAB-494-AB-G5-ctrl-1', 1534: 'E-MTAB-494-AB-G5-ctrl-2', 1535: 'E-MTAB-494-AB-G5-ctrl-3', 1539: 'E-TABM-33-PBA: Tue-30d-1', 1540: 'E-TABM-33-PBA: Tue-30d-2', 1541: 'E-TABM-33-PBA: Tue-14d-1', 1542: 'E-TABM-33-PBA: Tue-14d-2', 1545: 'E-TABM-33-PBA: Tue-32h-1', 1546: 'E-TABM-33-PBA: Tue-90d-2', 1547: 'E-TABM-33-PBA: Tue-16h-1', 1548: 'E-TABM-33-PBA: Tue-16h-2', 1552: 'E-TABM-33-PBA: Tue-48h-1', 1553: 'E-TABM-33-PBA: Tue-48h-2', 1643: 'E-TABM-33-PBA: Tue-11.7h-1', 1644: 'E-TABM-33-PBA: Tue-11.7h-2', 1659: 'E-MTAB-6548-CONTROL1.cel', 1660: 'E-MTAB-6548-CONTROL2.cel', 1661: 'E-MTAB-6548-CONTROL3.cel', 1662: 'E-MTAB-6548-CONTROL4.cel', 1663: 'E-MTAB-6548-CONTROL5.cel', 1664: 'E-MTAB-6548-CONTROL6.cel', 1665: 'E-MTAB-6548-CONTROL7.cel', 1666: 'E-MTAB-6548-CONTROL8.cel', 1678: 'E-MEXP-1301-H_Ethanol 1', 1679: 'E-MEXP-1301-H_Ethanol 2', 1700: 'E-MEXP-1301-H_Control 1', 1701: 'E-MEXP-1301-H_Control 2', 1702: 'E-MEXP-1301-H_Control 3', 1708: 'E-MTAB-5850-tre-heart-1', 1709: 'E-MTAB-5850-tre-heart-2', 1710: 'E-MTAB-5850-tre-heart-3', 2676: 'E-MTAB-2207-control morpholino 1', 1739: 'E-MEXP-171-Danio rerio', 1788: 'E-MEXP-1301-H_Nicotine 1', 1789: 'E-MEXP-1301-H_Nicotine 2', 1910: 'E-MEXP-1239-reg-heart-3d-1', 1911: 'E-MEXP-1239-reg-heart-0h-1', 1912: 'E-MEXP-1239-reg-heart-5d-1', 1913: 'E-MEXP-1239-reg-heart-5d-2', 1914: 'E-MEXP-1239-reg-heart-0h-4', 1915: 'E-MEXP-1239-reg-heart-0h-5', 1917: 'E-MEXP-1239-reg-heart-6h-1', 1944: 'E-TABM-105-Mid_24h_2_B3_75-59', 1948: 'E-TABM-105-Mid_24h_1_C7_75-59', 1953: 'E-TABM-105-Mid_24h_4_H4_75-59', 1954: 'E-TABM-105-Mid_24h_3_F8_75-59', 1962: 'E-MEXP-1239-reg-heart-12h-1', 1965: 'E-MEXP-1239-reg-heart-24h-1', 1970: 'E-TABM-105-Low_24h_1_F2_75-59', 1972: 'E-TABM-105-Low_24h_4_D3_75-59', 1973: 'E-TABM-105-Low_24h_2_E5_75-59', 1976: 'E-TABM-105-Low_24h_5_D6_75-59', 1981: 'E-MTAB-1996-Hyb_wildtype', 2004: 'E-TABM-105-Mid_168h_5_D1_75-59', 2005: 'E-TABM-105-Mid_168h_3_E3_75-59', 2024: 'E-TABM-105-Low_168h_1_A4_75-59', 2028: 'E-TABM-105-Low_168h_3_F1_75-59', 2034: 'E-TABM-105-Low_168h_4_E7_75-59', 2039: 'E-TABM-105-Low_168h_5_H8_75-59'}
Accuracy of kNN classifier on training set (3227 labeled samples, 260 total categories) for metadata field refinebio_accession_code: 0.24
Accuracy of kNN classifier on test set (1384 labeled samples, 260 total categories) for metadata field refinebio_accession_code: 0.02
Clustering and imputing metadata field: refinebio_age
Mapped strings to integers:
{287: '10.000', 289: '30.000', 291: '14.000', 292: '60.000', 293: '25.000', 294: '35.000', 295: '11.700', 296: '73.000', 297: '74.000', 298: '48.000', 299: '76.000', 301: '96.000', 346: '192.000', 239: '1.000', 240: '2.000', 241: '3.000', 242: '4.000', 243: '5.000', 244: '6.000', 245: '7.000', 246: '8.000', 247: '9.000'}
Accuracy of kNN classifier on training set (207 labeled samples, 22 total categories) for metadata field refinebio_age: 0.85
Accuracy of kNN classifier on test set (90 labeled samples, 22 total categories) for metadata field refinebio_age: 0.78
Clustering and imputing metadata field: refinebio_cell_line
Mapped strings to integers:
{276: 'zf4', 358: 'pac2'}
Accuracy of kNN classifier on training set (19 labeled samples, 2 total categories) for metadata field refinebio_cell_line: 1.00
Accuracy of kNN classifier on test set (9 labeled samples, 2 total categories) for metadata field refinebio_cell_line: 1.00
Clustering and imputing metadata field: refinebio_compound
Mapped strings to integers:
{769: 'control', 1287: 'tetracycline', 1164: 'fgf8 protein', 1550: 'fetal calf serum', 1297: 'valproic acid', 1308: 'chorpromazin', 1059: 'amioderone', 5926: 'recombinant leptin-a and leptin-a morpholino oligonucleotide', 860: 'aplexone', 432: 'none', 817: 'caffeine', 435: 'dmso', 1334: 'cyclosporin a', 2370: '1-naphtylisothiocyanate', 1480: 'uxt morpholino', 970: 'isoniazid', 1739: 'lithium carbonate', 334: 'dsw', 848: 'adefovir', 1361: 'thioacetamide', 1875: 'dimethyl sulfoxide', 1111: 'bsa protein', 857: 'nicotine', 1372: 'acetaminophen', 863: 'paraquat', 3559: 'leptin-a morpholino oligonucleotide', 1896: 'control morpholino', 747: 'ethanol', 3180: '2,3,7,8-tetrachlorodibenzo-p-dioxin', 1261: 'carbamazepin', 2415: '17alpha-ethynylestradiol', 1011: 'd-mannitol', 2812: '17 alpha-ethynylestradiol (ee2)'}
Accuracy of kNN classifier on training set (174 labeled samples, 30 total categories) for metadata field refinebio_compound: 0.63
Accuracy of kNN classifier on test set (75 labeled samples, 30 total categories) for metadata field refinebio_compound: 0.40
Clustering and imputing metadata field: refinebio_disease
Mapped strings to integers:
{769: 'control', 1641: 'metabolic memory', 649: 'normal', 2315: 'regenerated their axons', 2189: 'mycobacterium marinum', 2708: 'embryonal rhabdomyosarcoma', 821: 'diabetic', 2921: 'did not regenerate their axons'}
Accuracy of kNN classifier on training set (44 labeled samples, 6 total categories) for metadata field refinebio_disease: 0.86
Accuracy of kNN classifier on test set (19 labeled samples, 6 total categories) for metadata field refinebio_disease: 0.53
Clustering and imputing metadata field: refinebio_disease_stage
Mapped strings to integers:
{769: 'control', 1641: 'metabolic memory', 2189: 'mycobacterium marinum', 2708: 'embryonal rhabdomyosarcoma', 821: 'diabetic', 649: 'normal'}
Accuracy of kNN classifier on training set (37 labeled samples, 4 total categories) for metadata field refinebio_disease_stage: 0.97
Accuracy of kNN classifier on test set (17 labeled samples, 4 total categories) for metadata field refinebio_disease_stage: 0.65
Clustering and imputing metadata field: refinebio_genetic_information
Mapped strings to integers:
{}
Clustering and imputing metadata field: refinebio_organism
Mapped strings to integers:
{843: 'DANIO_RERIO'}
Accuracy of kNN classifier on training set (3227 labeled samples, 1 total categories) for metadata field refinebio_organism: 1.00
Accuracy of kNN classifier on test set (1384 labeled samples, 1 total categories) for metadata field refinebio_organism: 1.00
Clustering and imputing metadata field: refinebio_platform
Mapped strings to integers:
{4001: 'Affymetrix Human Gene 1.0 ST Array (hugene10st)', 5579: 'Affymetrix Genechip Zebrafish ST Genome Array 1.1 (zebgene11st)', 4649: 'IlluminaGenomeAnalyzer (IlluminaGenomeAnalyzer)', 4262: 'Affymetrix Zebrafish Genome Array (zebrafish)', 3111: 'IlluminaHiSeq1500 (IlluminaHiSeq1500)', 3113: 'IlluminaHiSeq2500 (IlluminaHiSeq2500)', 3435: 'Zebrafish Gene 1.0 ST Array (zebgene10st)', 3101: 'IlluminaHiSeq1000 (IlluminaHiSeq1000)', 4941: 'IlluminaGenomeAnalyzerII (IlluminaGenomeAnalyzerII)', 1835: 'NextSeq500 (NextSeq500)', 3107: 'IlluminaHiSeq4000 (IlluminaHiSeq4000)', 3241: 'Illumina HiSeq 2500 (Illumina HiSeq 2500)', 3485: 'IonTorrentProton (IonTorrentProton)', 3227: 'IlluminaHiScanSQ (IlluminaHiScanSQ)', 5181: 'IlluminaGenomeAnalyzerIIx (IlluminaGenomeAnalyzerIIx)', 3103: 'IlluminaHiSeq2000 (IlluminaHiSeq2000)'}
Accuracy of kNN classifier on training set (3227 labeled samples, 14 total categories) for metadata field refinebio_platform: 0.96
Accuracy of kNN classifier on test set (1384 labeled samples, 14 total categories) for metadata field refinebio_platform: 0.94
Clustering and imputing metadata field: refinebio_race
Mapped strings to integers:
{}
Clustering and imputing metadata field: refinebio_sex
Mapped strings to integers:
{784: 'unknown', 1274: 'hemaphrodite', 618: 'female', 1634: 'males and females', 415: 'male'}
Accuracy of kNN classifier on training set (125 labeled samples, 5 total categories) for metadata field refinebio_sex: 0.94
Accuracy of kNN classifier on test set (54 labeled samples, 5 total categories) for metadata field refinebio_sex: 0.91
Clustering and imputing metadata field: refinebio_source_archive_url
Mapped strings to integers:
{6721: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MTAB-494/samples', 6779: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MEXP-1301/samples', 6742: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MEXP-736/samples', 6662: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-TABM-33/samples', 6743: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MEXP-818/samples', 6763: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MTAB-2207/samples', 6767: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MTAB-5406/samples', 6769: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MTAB-2906/samples', 6770: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MTAB-1476/samples', 6710: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-TABM-105/samples', 6775: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MTAB-6548/samples', 6777: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MTAB-1996/samples', 6714: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MTAB-406/samples', 6735: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MEXP-171/samples', 6716: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MTAB-381/samples', 6746: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MEXP-758/samples', 6789: 'https://www.ebi.ac.uk/arrayexpress/json/v3/experiments/E-MEXP-1239/samples'}
Accuracy of kNN classifier on training set (177 labeled samples, 17 total categories) for metadata field refinebio_source_archive_url: 0.94
Accuracy of kNN classifier on test set (76 labeled samples, 17 total categories) for metadata field refinebio_source_archive_url: 0.95
Clustering and imputing metadata field: refinebio_source_database
Mapped strings to integers:
{1032: 'ARRAY_EXPRESS', 219: 'GEO', 230: 'SRA'}
Accuracy of kNN classifier on training set (3227 labeled samples, 3 total categories) for metadata field refinebio_source_database: 0.99
Accuracy of kNN classifier on test set (1384 labeled samples, 3 total categories) for metadata field refinebio_source_database: 0.98
Clustering and imputing metadata field: refinebio_specimen_part
Mapped strings to integers:
{1536: 'heart ventricle', 1028: 'mch+ mantle', 2055: 'dechorionated embryo', 521: 'lavae', 4108: 'right presomitic mesoderm (posterior half)', 4621: 'myf5-gfp+/mylz2-mcherry+ cell subfraction, tumor #2', 532: 'heart', 546: 'liver', 2084: 'adult zebrafish brain', 1118: 'normal skin', 4662: 'retina with retinal pigment epithelium attached', 567: 'tumor', 2625: 'kidney multiciliated cells', 524: 'brain', 1099: 'whole brain', 2126: 'upper digestive tract', 2640: 'the last formed two somites', 2641: 'mononuclear myogenic cells', 2642: 'right side flanking tailbud', 1109: 'whole larva', 2654: 'dissociated sorted embryos', 1645: 'zebrafish embyos', 1136: 'whole ovary', 2682: 'dorsal subventricular zone', 635: 'larvae', 643: 'retina', 649: 'muscle', 654: 'embryo', 4239: 'dissected larval zebrafish trunks (approx 50)', 658: 'vessel', 1171: 'mesendoderm', 2199: 'medial neurogenic zone', 664: 'testes', 2201: 'renal collecting ducts', 1178: 'melanophore', 1691: 'embryos from eggs', 6300: 'myf5-gfp negative/mylz2-mcherry negative cell subfraction, tumor #1', 6301: 'myf5-gfp negative/mylz2-mcherry negative cell subfraction, tumor #2', 1183: 'pineal gland', 3235: 'zebrafish primary melanoma tumor', 1707: 'rhabdomyosarcoma', 1200: 'xanthophore', 2745: 'dechorionated whole embryos', 1210: 'whole larvae', 1727: 'zebrafishembryos', 1222: 'whole hearts', 1741: 'dorsal parenchyma', 1229: 'whole embryo', 1746: 'melanoma cell line', 1236: 'anterior psm', 212: 'nf', 1789: 'testicular tissue', 3335: 'zebrafish melanoma tumor cell line', 3857: 'mocklna injected embryos, dechorionated', 4380: 'anti-mir-34lna injected embryos, dechorionated', 3360: 'somites and all associated tissues', 1313: 'abnormal skin', 1831: 'fibroblastic cells', 1323: 'embryonic eye', 812: 'gfp+ hair', 3376: 'myelomonocytes sorted from kidney', 5431: 'olfactory rosettes, olfactory bulbs, and telencephalons', 1340: 'kidney marrow', 323: 'eye', 842: 'melanoma', 1357: 'whole-embryos', 851: 'ectoderm', 5460: 'myf5-gfp negative/mylz2-mcherry+ cell subfraction, tumor #1', 5461: 'myf5-gfp+/mylz2-mcherry negative cell subfraction, tumor #2', 1367: 'posterior psm', 1378: 'telencephalon', 2412: 'mocklna injected embryos', 2422: 'extracardiac body tissue', 2935: 'anti-mir-34lna injected embryos', 3453: 'embryonic tissue, post cell sorting', 1919: 'whole embryo lysate', 1920: 'whole kidney tissue', 1414: 'center tailbud', 1433: '10 dpf zebrafish', 1435: 'mch+/gfp+ mantle', 1439: 'whole organism', 416: 'cell', 4517: 'wkms(without erythrocytes) sorted from kidney', 966: 'animal cap', 967: 'caudal fin', 984: 'cone cells', 2527: 'left side flanking tailbud', 7148: "tailbud, presomitic mesoderm, kupffer's vesicle and all associated tissues", 1005: 'whole body', 1009: 'center psm', 1013: 'retina+rpe', 2556: 'sorted gfp+ t-lymphoblasts', 4620: 'myf5-gfp+/mylz2-mcherry+ cell subfraction, tumor #1'}
Accuracy of kNN classifier on training set (826 labeled samples, 78 total categories) for metadata field refinebio_specimen_part: 0.95
Accuracy of kNN classifier on test set (354 labeled samples, 78 total categories) for metadata field refinebio_specimen_part: 0.92
Clustering and imputing metadata field: refinebio_subject
Mapped strings to integers:
{109: 'm', 49: '1', 50: '2', 51: '3', 52: '4', 53: '5', 54: '6', 55: '7', 56: '8', 57: '9', 284: 'wt1', 285: 'wt2', 159: 'm2'}
Accuracy of kNN classifier on training set (6 labeled samples, 6 total categories) for metadata field refinebio_subject: 0.17
Accuracy of kNN classifier on test set (3 labeled samples, 6 total categories) for metadata field refinebio_subject: 0.00
Clustering and imputing metadata field: refinebio_time
Mapped strings to integers:
{769: 'control', 1412: 'fertilization', 897: '0.75 to 6 hpf', 265: 'ct2', 269: 'ct6', 398: 'day 0', 399: 'day 1', 402: 'day 4', 195: '10b', 148: '2b', 405: 'day 7', 1046: 'egg_laying', 152: '6b', 156: '4h', 159: '168', 3253: '3 day post amputation of caudal fin', 198: '11d', 48: '0', 49: '1', 50: '2', 51: '3', 53: '5', 54: '6', 3255: '5 day post amputation of caudal fin', 312: 'ct10', 441: '48hrs', 315: 'ct22', 316: 'ct14', 447: 'day 10', 320: 'ct18', 2022: '3 day post-amputation', 323: '36hr', 326: '48hr', 199: '14b', 203: '12h', 2638: '24 hours post-fertilization', 2644: '48 hours post-fertilization', 100: '22', 97: '10', 99: '12', 2020: '1 day post-amputation', 101: '14', 102: '24', 2024: '5 day post-amputation', 105: '18', 2026: '7 day post-amputation', 451: 'day 14', 3251: '1 day post amputation of caudal fin', 893: '0.75 to 2 hpf'}
Accuracy of kNN classifier on training set (228 labeled samples, 42 total categories) for metadata field refinebio_time: 0.79
Accuracy of kNN classifier on test set (98 labeled samples, 42 total categories) for metadata field refinebio_time: 0.59
Clustering and imputing metadata field: refinebio_title
Mapped strings to integers:
{8250: '30% Epiboly treated, frozen at shield stage; denoted Epiboly/Shield in processed data file', 114: 'A1', 115: 'A2', 116: 'A3', 117: 'C2', 118: 'C3', 123: '0K', 129: '6K', 131: '0S', 137: '6S', 138: 'T6', 153: 'WB', 156: 'MO', 171: 'WT', 177: '24K', 8371: 'Sphere treated, frozen at seen somite stage; denoted Sphere/Somite in processed data file', 182: 'C1B', 183: 'C2B', 184: 'CD1', 185: 'C4B', 186: 'C5B', 187: 'C6B', 189: 'C8B', 193: 'Mt', 198: 'C1R', 199: 'T1B', 200: 'T2B', 201: 'C4R', 202: 'C5R', 203: 'T5B', 204: 'C7R', 205: 'C8R', 206: 'T8B', 207: 'OL4', 208: 'OL5', 210: '2.1A', 211: '2.1B', 216: 'T2R', 217: 'T3R', 218: '8.3A', 219: '8.3B', 220: 'T6R', 221: 'YS1', 222: 'WT3', 223: 'YS3', 224: '5s8', 225: 'YS5', 226: 'YS6', 229: 'PBS', 230: '5y8', 231: '6y8', 237: 'MMS', 248: 'CL63', 249: 'CL64', 250: 'CL65', 251: 'CL66', 252: 'CL67', 253: 'CL68', 258: '10.2A', 259: '10.2B', 260: '12.2A', 261: '12.2B', 263: '15.2A', 264: '15.2B', 268: 'tg1', 269: '5s32', 270: '5s24', 271: '6s24', 8466: '30% Epiboly treated, frozen at tailbud stage; denoted Epiboly/Tailbud in processed data file', 275: '5y32', 276: '5y24', 277: '13y8', 278: 'OPC4', 279: 'OPC5', 282: 'Tu 1', 283: 'Tu 2', 284: 'Tu 3', 285: 'YAP3', 286: 'Sib', 293: 'Tel', 297: 'p53 1', 298: 'p53 2', 299: 'p53 3', 309: '4.3.1A', 310: '4.3.1B', 311: '7.2.1A', 312: '7.2.1B', 315: 'WT_1', 316: '13s32', 317: 'WT_3', 318: 'WT_4', 320: 'WT_6', 322: '13y32', 323: '13y24', 328: 'zMP1', 329: 'zMP2', 334: 'zSP1', 335: 'zSP2', 346: 'Seq1', 347: 'Wt_1', 348: 'Wt_2', 349: 'Wt_3', 350: 'Seq5', 355: '13.1.1A', 356: '13.1.1B', 357: 'WT 2h', 358: 'CTRL1', 359: 'CTRL2', 360: 'CTRL3', 361: 'Tu P0', 363: 'Mid 1', 364: '7dpa', 365: 'Mid 3', 366: 'Mid 4', 367: 'sib1', 368: 'TCDD 1', 369: 'TCDD 2', 370: 'TCDD 3', 371: '5hpf', 373: 'sih1', 374: 'sih2', 375: 'sih3', 384: 'TOM_1', 385: 'TOM_2', 386: 'TOM_3', 388: 'DMSO 1', 389: 'DMSO 2', 390: 'DMSO 3', 391: 'D5.5WT', 393: 'D7.5WT', 394: 'MUTAS', 395: 'AB-G5-2', 396: 'AB-G5-3', 397: 'Seq13', 398: 'Seq14', 399: 'Seq15', 401: '11KT_1', 402: '11KT_2', 403: '11KT_3', 404: '11KT_4', 405: '11KT_5', 409: 'MUTPS', 410: 'bud-2', 417: '12hpf', 420: '24hpf', 421: 'SIBAS3', 425: 'Dre-10', 426: 'tail', 427: 'Dre-12', 428: 'Dre-04', 429: 'Dre-14', 430: 'Dre-15', 431: 'Dre-07', 432: 'Dre-17', 433: 'Dre-18', 434: 'Dre-19', 436: 'SIBPS3', 439: '8.4.1.1.1', 445: 'MUTAS3', 448: 'BEZO_1', 449: 'BEZO_2', 450: 'BEZO_3', 453: 'BaAQ_1', 454: 'BaAQ_2', 455: 'BaAQ_3', 456: 'MM03 WT', 457: 'WTGF_2', 458: '2dpf-1', 459: '2dpf-2', 460: 'MUTPS3', 461: '5dpf-1', 462: '5dpf-2', 465: 'WT (T01)', 466: 'IM2_WT', 468: 'WTCV_1', 469: 'WTCV_2', 470: 'WTCV_3', 475: 'EC_ab1', 478: 'EGFP+_2', 479: 'EGFP-_1', 480: 'E_wt 1', 481: 'E_wt 2', 482: 'E_wt 3', 485: 'Dist 1', 486: '5days', 487: 'Dist 3', 488: 'Dist 4', 489: 'Dist 5', 499: 'WT TB A1', 500: 'WT TB B1', 501: 'WT TB B2', 506: 'Prox 1', 507: 'Prox 2', 508: 'Prox 3', 509: 'Prox 4', 510: 'Prox 5', 511: '1PPMHg2', 512: '1PPMHg3', 513: '3PPMHg2', 514: '3PPMHg3', 515: 'dome-1', 516: 'dome-2', 518: '28hpf-1', 519: '28hpf-2', 521: 'gill10', 523: 'Ikk2 2h', 525: 'Ikk2 4h', 529: 'gill18', 530: 'gill28', 531: 'E2+TCDD 2', 532: 'E2+TCDD 3', 537: 'RPL11-MO', 538: 'E_zHS10', 539: 'RPS19 MO', 540: 'E_zHS12', 541: 'E_zHS13', 542: 'E_zHS23', 543: 'E_zHS15', 544: 'E_zHS16', 545: 'IM5_SPT', 546: 'E_zHS09', 547: 'E_zHS19', 550: 'EC-con1', 554: 'zf_wt', 558: '10PPMHg1', 559: 'MO1.cel', 560: 'U2AF2A KD', 561: 'U2AF2B KD', 562: 'MO4.cel', 564: 'TDRD1WK3', 568: 'RS1.cel', 569: 'RS2.cel', 570: 'RS3.cel', 571: 'RS4.cel', 572: 'Qkiac 3', 579: 'WT rep1', 580: 'WT rep2', 581: 'WT rep3', 588: 'EXTRACT1', 592: 'Cont MO', 593: 'E_zHS242', 594: 'mac-ab1', 595: 'MutGF_1', 596: 'MutGF_2', 598: 'RPS24_MO', 601: 'EC_con2', 607: 'MutCV_1', 608: 'MutCV_2', 609: 'Eye Day', 612: 'CBZ_a_51', 613: 'CBZ_b_60', 614: 'TAIL2_WT', 615: 'TAIL3_WT', 616: 'Tu Male', 617: 'CBZ_c_63', 618: 'CBZ_d_72', 619: 'CBZ_a_49', 620: 'CBZ_c_66', 621: 'brain10', 622: 'CBZ_d_67', 623: 'CBZ_d_68', 624: 'CBZ_d_69', 625: 'tbx5 MO2', 626: 'U2AFA2B KD', 627: 'Dr_60h_1', 628: 'Dr_60h_2', 629: 'brain18', 630: 'Dr_72h_1', 631: 'Dr_72h_2', 632: 'C2_24hpf', 633: '24hpf_E1', 634: '1Kcell-1', 635: '1Kcell-2', 636: '72hpf_E1', 637: 'heart18', 638: 'heart28', 639: 'CAC rep 1', 640: 'CAC rep 2', 641: 'BRAF;p53 3', 642: 'WT_rep1', 643: 'WT_rep2', 644: 'WT_rep3', 645: 'mac_ab2', 647: 'WTTESTIS', 648: 'S2_24hpf', 650: 'S1_72hpf', 651: 'S2_72hpf', 652: 'liver28', 653: 'S1_48hpf', 654: 'S2_48hpf', 657: '2-4cell-1', 658: '2-4cell-2', 661: 'Kidney1', 662: 'Kidney2', 665: 'CAFF_a_73', 666: 'CAFF_c_90', 667: 'CAFF_b_83', 668: 'CAFF_b_84', 669: 'CAFF_a_77', 670: 'CAFF_d_93', 671: 'CAFF_c_86', 672: 'CAFF_d_95', 673: '36hpf PGC', 675: '2079-JTG-4-1', 676: '2079-JTG-4-2', 682: 'Mutant1', 8875: '30% Epiboly treated, frozen at seven somite stage; denoted Epiboly/Somite in processed data file', 684: 'CAPE [CC5]', 691: 'Sample 1', 692: 'Sample 2', 693: 'Sample 3', 694: 'NICD rep1', 695: 'NICD rep2', 696: 'NICD rep3', 706: 'CTRL 3dpf', 709: 'DMSO [CC4]', 714: 'Mutant 1', 716: 'Mutant 3', 717: 'Mutant 4', 718: 'MUT_rep2', 719: 'mac-con1', 720: 'Mutant 7', 721: 'WT skin 1', 722: '11KT+Amh_1', 723: '11KT+Amh_2', 724: '11KT+Amh_3', 725: '11KT+Amh_4', 726: '11KT+Amh_5', 727: '48-D3_S3_R1', 728: 'shield-2', 729: 'shield-3', 732: 'CS_Tel_30', 735: 'zeb-con1', 736: 'Dr_bud_1', 737: 'Dr_bud_2', 738: '48-P1_S4_R1', 739: 'sib_nuc', 740: '48-P2_S5_R1', 741: 'kidney10', 742: '48-P3_S6_R1', 744: 'spleen10', 746: 'zIEC1 mRNA', 747: 'zIEC2 mRNA', 748: 'zIEC3 mRNA', 749: 'kidney18', 750: 'C96hpf_l3', 752: 'WT_Ctrl 1', 753: 'WT_Ctrl 2', 754: 'WT_Ctrl 3', 755: 'muscle28', 756: 'clp-d-1h-1', 757: 'clp-d-1h-2', 758: 'clp-d-3h-1', 759: 'clp-d-3h-2', 760: 'clp-d-3h-3', 761: 'hlp-d-1h-1', 762: 'hlp-d-1h-2', 763: 'hlp-d-3h-1', 764: 'hlp-d-3h-2', 765: 'clp-l-1h-2', 766: 'Nmbu-RNA-1', 767: 'Nmbu-RNA-2', 768: 'Nmbu-RNA-3', 769: 'Nmbu-RNA-4', 770: 'Nmbu-RNA-5', 771: 'Nmbu-RNA-6', 772: 'Nmbu-RNA-7', 773: 'hlp-l-3h-3', 774: '5d-D1_S7_R1', 775: 'llp-l-3h-1', 776: 'llp-l-3h-2', 777: 'Mutant_1', 778: '5d-D3_S9_R1', 779: 'ZF.GFP.Low', 786: 'Control1', 787: 'Control2', 791: '1dpa con 1', 792: 'Dr_5day_1', 793: '3dpa con 1', 794: 'Dr_5day_3', 795: '3dpa con 3', 796: 'Sibling 4', 798: 'RPS19+p53 MO', 799: 'Sibling 7', 800: 'E_mzoep 1', 801: 'E_mzoep 2', 802: 'E_mzoep 3', 803: 'WT-sox10_1', 804: 'WT-sox10_2', 805: 'WT-sox10_3', 808: 'AB-P2_S20_R1', 809: '0 hpi rep1', 810: '0 hpi rep2', 811: '0 hpi rep3', 812: 'Extract 1', 813: 'Extract 2', 814: 'Extract 3', 815: 'AB-P1_S19_R1', 816: 'Nmbu-RNA-12', 817: 'Nmbu-RNA-13', 818: 'Control 1', 819: 'Control 2', 820: 'Control 3', 821: '9 hpi rep4', 822: 'UHRF1_hi_A', 823: 'UHRF1_hi_B', 824: '5mg_arm_1', 825: 'WT-20hpf-DP', 826: '5mg_arm_3', 828: '5d-P1_S10_R1', 829: 'MZudu TB A1', 830: 'MZudu TB B1', 831: 'MZudu TB B2', 832: 'WT-36hpf-DP', 833: 'WT-28hpf-DP', 837: '7hpf soma', 841: 'WT_10hfp_A', 842: 'WT_10hfp_B', 843: 'WT_10hfp_C', 844: 'WT poly(A)+', 845: '3mpf_rep1', 846: 'ZMEL1 - rep1', 847: 'ZMEL1 - rep2', 848: 'ZMEL1 - rep3', 850: 'control 1', 851: 'control 2', 852: 'tbx5_8neg', 853: 'tbx5_9neg', 855: '1ypf_rep1', 856: '1ypf_rep2', 857: 'ZF.GFP.High', 858: 'hlp-d-1h-3-2', 861: 'ZiliIPTes', 862: 'FliRas 3df', 866: 'hlp-l-1h-3-2', 867: '18 hpi rep2', 868: '18 hpi rep3', 869: '18 hpi rep4', 870: 'tbx5_2pos', 872: 'ZiwiIPTes', 873: 'EC-repair1', 874: '3 dpa con b', 875: 'wt_ache_1', 876: 'wt_ache_2', 877: 'glut12 MO_3', 878: 'Leiden HS02', 879: 'Leiden HS03', 880: 'Leiden HS04', 881: '2DPFVD3 rep1', 882: '2DPFVD3 rep2', 883: 'Control_3', 884: '2DPFVD3 rep4', 885: '6DPFVD3 rep1', 886: '6DPFVD3 rep2', 887: '6DPFVD3 rep3', 888: '6DPFVD3 rep4', 889: '6DPFVD3 rep5', 890: '3dpa tcdd 3', 891: 'WT_3-3hfp_A', 892: 'WT_3-3hfp_B', 893: 'WT_3-3hfp_C', 894: 'WT_5-3hfp_B', 895: 'WT_4-5hpf_B', 896: 'WT_4-5hpf_C', 897: '3407STDY6276910', 898: '3407STDY6276911', 899: '3407STDY6276912', 900: '3407STDY6276850', 901: '3407STDY6276851', 902: '3407STDY6276852', 903: '3407STDY6276853', 904: '3407STDY6276854', 905: 'CbrainF_b3', 906: '3407STDY6276838', 907: 'C2cells_r2', 908: '3407STDY6276858', 909: '3407STDY6276859', 910: 'CbrainM_b1', 911: '3407STDY6276897', 912: '3407STDY6276898', 913: 'CbrainM_b4', 914: 'CbrainM_b5', 917: 'tbx5_10pos', 918: '1-cell rep1', 921: '4M_ZT4_rep1', 922: '4M_ZT4_rep2', 924: 'EC_repair2', 925: 'UbrainF_b5', 926: 'U2cells_r3', 927: 'MO_impdh1a', 928: 'MO_impdh1b', 929: 'UbrainM_b2', 930: 'UbrainM_b3', 932: 'UbrainM_b5', 935: 'pitx2ab MO1', 936: 'pitx2ab MO2', 937: 'pitx2ab MO3', 938: 'Dr_32cell_1', 939: 'Dr_32cell_2', 940: 'Mid_24h_2_B3', 942: '6hpf_Dcp2DN', 943: 'CS+US_Tel_30', 944: 'Mid_24h_1_C7', 945: 'CovaryF_g1', 946: 'CovaryF_g2', 948: 'CONTROL1.cel', 949: 'CovaryF_g5', 950: 'CONTROL3.cel', 951: 'CONTROL4.cel', 952: 'CONTROL5.cel', 953: 'CONTROL6.cel', 954: 'CONTROL7.cel', 955: 'CONTROL8.cel', 956: '1dpa Beclo 1', 957: '1dpa Beclo 2', 958: 'CTCF_10hfp_A', 959: 'Sample_20534', 960: 'Sample_20535', 961: 'Sample_23560', 962: 'Sample_23561', 963: 'UovaryF_g1', 964: 'N1_nabu_RNA', 965: 'dm_77h_25_433', 966: 'UovaryF_g4', 967: 'YapS87A rep3', 968: '12M_ZT4_rep1', 969: '12M_ZT4_rep2', 970: 'dm_77h_27_436', 971: '26809202_gfp_3', 972: 'wt-clutch1', 973: 'wt-clutch2', 9166: 'Wild-type embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep2', 9167: 'Wild-type embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep3', 9168: 'Wild-type embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep4', 977: 'neg_7dpi_05', 978: 'CHT-HSPC rep1', 979: 'CHT-HSPC rep2', 980: '2DPFETOH rep1', 981: '2DPFETOH rep2', 982: '2DPFETOH rep3', 983: '2DPFETOH rep4', 984: '2DPFETOH rep5', 985: 'Morphant_1', 986: 'Morphant_2', 987: 'Morphant_3', 988: '3P_Seq_4hpf', 989: '2h RPFs run 3', 991: 'Cortisol_1', 992: 'Cortisol_2', 993: 'Cortisol_3', 997: '96_con_rep1', 998: '96_con_rep2', 1000: 'Mid_168h_5_D1', 1001: 'Mid_168h_3_E3', 1002: 'Loser, rep 2', 1003: 'Loser, rep 3', 1004: 'tre-heart-3', 1008: 'dm_77h_FM_351', 1009: 'CTCF_3-3hfp_B', 1010: 'Tlr2-/-_PBS_11', 1011: 'Tlr2-/-_PBS_12', 1012: 'CTCF_4-5hpf_B', 1013: 'CTCF_4-5hpf_C', 1014: 'Tlr2+/-_Mm20_1', 1015: 'Mock_1dpi_A', 9208: 'Wild-type embryos heat-shocked for 30 mins and posterior PSM dissected after 30 mins, biological rep1', 1017: 'Nano_1dpi_A', 1018: 'Nano_1dpi_B', 9211: 'Wild-type embryos heat-shocked for 30 mins and posterior PSM dissected after 30 mins, biological rep4', 1020: 'zmp_ph271_B3', 1021: 'zmp_ph271_B4', 1022: '9267X8_tumor', 1023: 'zmp_ph271_B6', 1024: '5d-1-2-P3_S15_R1', 1025: 'zmp_ph266_D2', 1026: 'zmp_ph266_F1', 1027: 'zmp_ph257_B6', 1028: 'zmp_ph266_F3', 1029: 'zmp_ph266_B8', 1030: 'zmp_ph266_F5', 1031: 'zmp_ph266_F6', 1032: 'zmp_ph266_D9', 1033: 'zmp_ph257_H6', 1034: 'zmp_ph266_F9', 1035: 'zmp_ph257_H8', 1036: 'zmp_ph257_H9', 1037: '12h RPFs run 2', 1038: 'Zebrafish-C', 1039: '24h RPFs run 1', 1040: '24h RPFs run 2', 1041: '3P_Seq_72hpf', 1042: 'mac-repair1', 1043: 'CuCPF10_4May07', 1044: '1 \xce\xbcM PCB153-1', 1045: '48h RPFs run 1', 1046: 'High_24h_4_E2', 1047: 'CuCPF14_4May07', 1048: 'CuCPF07_3May07', 1049: '4 hr DMSO Rep 1', 1050: 'CuCPF09_3May07', 1051: 'CuCPF19_3May07', 1052: 'CuCPF29_3May07', 1053: 'High_24h_3_G8', 1054: 'm39 total RNA', 1055: 'Dr_shield_2', 1056: '8 hr DMSO Rep 4', 1057: 'CtestesM_g3', 1059: 'CtestesM_g5', 1062: 'Ctrl_24h_3_A2', 1064: 'zmp_ph260_B10', 1065: '9267X12_tumor', 1066: 'Dr_prime25_2', 1067: '9267X14_tumor', 1068: 'zmp_ph271_B12', 1069: 'zmp_ph257_A10', 1070: 'zmp_ph257_B10', 1071: 'zmp_ph257_B11', 1072: 'zmp_ph257_B12', 1073: 'zmp_ph266_E10', 1074: 'zmp_ph257_F10', 1075: 'Testis_Rep1', 1076: 'Testis_Rep2', 1077: 'Testis_Rep3', 1078: 'zmp_ph257_H12', 1080: 'LSB male rep1', 1081: 'LSB male rep2', 1083: '3P_Seq_1cell', 1084: 'intestine18', 1085: 'intestine28', 1087: 'Transgenic1', 1088: 'Transgenic2', 1089: 'Transgenic3', 1092: '10 \xce\xbcM PCB153-1', 1093: 'adultbraf_1', 1094: 'adultbraf_2', 1095: 'prdm1 WT rep1', 1096: 'rag2 RMS_RAG2-2', 1097: 'prdm1 WT rep3', 1098: 'rag2 RMS_RAG2-4', 1099: 'rag2 RMS_RAG2-5', 1100: 'Rad21_3-3hfp_C', 1101: 'rag2 RMS_RAG2-7', 1102: 'rag2 RMS_RAG2-8', 1103: 'rag2 RMS_RAG2-9', 1104: 'High_168h_2_B8', 1106: 'High_168h_3_H3', 1110: 'High_168h_5_G6', 1111: 'Winner, rep 1', 1112: 'Winner, rep 2', 1113: 'Winner, rep 3', 1114: 'Dr_prime5-6_1', 1115: 'Dr_prime5-6_2', 1116: 'Dr_prime5-6_3', 1119: 'Ctrl_168h_1_C2', 1120: 'Mirror, rep 2', 1121: 'Mirror, rep 3', 1123: 'Ctrl_168h_3_B5', 1124: '3P_Seq_Adult', 1126: 'Ctrl_168h_2_E6', 1127: 'Ctrl_168h_5_D5', 1128: 'Ctrl_168h_4_G4', 1130: 'MZnanog 2 hpf', 1132: 'Dr_6somite_1', 1133: 'Dr_6somite_2', 1134: 'MZnanog 6 hpf', 1136: 'mutant_rep1', 1137: 'mutant_rep2', 1138: '0.1 \xce\xbcM PCB153-1', 1139: 'WA_52hpf_rep1', 1140: 'ZF_4dpa_Fin_1', 1141: 'ZF_4dpa_Fin_2', 1142: 'YA_52hpf_rep2', 1143: 'YA_52hpf_rep3', 1144: 'gfp_nt_1hr_1', 1145: 'WT-36hpf-fli1a', 1146: 'gfp_nt_1hr_3', 1147: '3P_Seq_Ovary', 1151: 'Pineal_DD_ZT2', 1152: '1 hr TP-0903 Rep 1', 1153: '1 hr TP-0903 Rep 2', 1154: '1 hr TP-0903 Rep 3', 1155: '1 hr TP-0903 Rep 4', 1156: 'WR_52hpf_rep1', 1157: 'wt1aGFP_3_neg', 1158: 'wt1aGFP_4_neg', 1159: '8 hr TP-0903 Rep 1', 1160: '8 hr TP-0903 Rep 2', 1161: '8 hr TP-0903 Rep 3', 1162: '8 hr TP-0903 Rep 4', 1163: 'Pineal_LD_ZT6', 1164: '3P_Seq_PreMZT', 1173: '(-)4SUTP_512cell', 1174: 'WT heart 20dpa', 1175: 'Pineal_DD_CT10', 1176: '(-)4SUTP_128cell', 1177: 'control rep1', 1178: 'control rep2', 1179: 'control rep3', 1180: 'WT_control_2', 1181: 'Dr_14somite_3', 1182: 'WT-dlx5a-sox10', 1183: 'Pineal_DD_CT18', 1184: 'rpeh_86h_32_351', 1185: 'rpeh_86h_33_351', 1187: 'Mutant_DMSO_9', 1188: 'rpeh_86h_32_436', 1189: 'Control 24hpf', 1190: 'AB female rep2', 1194: 'dm_77h_25_399s61', 1195: 'dm_77h_25_399s62', 1197: 'dm_77h_28_399s61', 1198: 'Pineal_DD_ZT10', 1200: 'NH_FLI_skin_94', 1201: 'Pineal_DD_ZT22', 1202: 'Pineal_DD_ZT14', 1203: 'CuCPF25_21June07', 1204: 'NH_FLI_skin_98', 1205: 'Trilostane_1', 1206: 'Pineal_LD_ZT10', 1207: '0dpa mRNA, rep 1', 1208: '0dpa mRNA, rep 2', 1209: 'alcohol_rep1', 1210: 'Pineal_LD_ZT14', 1211: '4dpa mRNA, rep 1', 1212: '4dpa mRNA, rep 2', 1213: '4dpa mRNA, rep 3', 1214: 'Pineal_LD_ZT18', 1216: 'alcohol_rep8', 1217: '9267X1_control', 1218: '9267X2_control', 1219: '9267X3_control', 1220: 'MaleBody_Rep1', 1221: 'MaleBody_Rep2', 1222: 'UASEdn1-36hpf-DP', 1223: 'Apex TCDD 0 hpa 1', 1224: 'Apex TCDD 0 hpa 2', 1225: '9267X9_control', 1226: 'Apex TCDD 7 dpa 1', 1227: 'Mutant_DMSO_10', 1228: 'Mutant_DMSO_11', 1229: 'Mutant_DMSO_12', 1230: '26809002_setdb1_2', 1231: 'zf_libra(del)', 1232: '26645502_setdb1_1', 1233: 'foxo3b MO 24hpf', 1234: '27 hpf ethanol', 1236: '6hpf_control', 1237: '48 hpf ethanol', 1238: 'WRR_52hpf_rep1', 1239: 'WRR_52hpf_rep2', 1240: 'WRR_52hpf_rep3', 1241: 'control_rep2', 1242: 'NH_FLI_skin_106', 1243: 'gfp_neo_3hr_2', 1244: 'gfp_neo_3hr_3', 1245: 'gfp_neo_5hr_2', 1246: 'NH_FLI_skin_119', 1247: 'NH_FLI_skin_147', 1249: 'NH_FLI_skin_149', 1250: 'zfish_0ppm_R1', 1251: 'zfish_0ppm_R2', 1252: 'zfish_0ppm_R3', 1253: 'zfish_3ppm_R1', 1254: 'zfish_3ppm_R2', 1255: 'zf_libra(inv)', 1256: '4dpf_eye_rep2', 1257: '4dpf_eye_rep3', 1258: '5dpf_eye_rep3', 1259: '48 hpf control', 1260: 'cntl_nt_1hr_1', 1261: 'cntl_nt_1hr_2', 1262: 'cntl_nt_1hr_3', 1265: '9267X10_control', 1266: '9267X11_control', 1267: 'EGFP-negative 1', 1268: 'EGFP-negative 2', 1269: 'EGFP-negative 3', 1270: '9267X15_control', 1273: 'Pineal_DD_CT10b', 1276: 'Pineal_DD_CT22b', 1277: 'Pineal_DD_CT14b', 1278: 'hspNICD-36hpf-DP', 1279: 'HSB female rep1', 1280: 'cdh15 RMS_CDH15-7a', 1281: 'Pineal_DD_CT18b', 1282: 'Dr_90epiboly_1', 1283: 'LSB female rep1', 1284: 'LSB female rep2', 1285: 'Dr_75epiboly_1', 1286: 'Dr_75epiboly_2', 1290: 'Liver-AHCYmut-3', 1291: 'Liver-AHCYmut-4', 1293: 'Liver-AHCYmut-6', 1296: 'epcam mutant 1', 1297: 'epcam mutant 2', 1298: 'epcam mutant 3', 1299: 'zfish_10ppm_R1', 1300: 'zfish_10ppm_R2', 1301: 'zfish_10ppm_R3', 1302: '6hpf_controlB', 1304: '24hpf Sample1_11', 1305: 'mylz RMS_MYLZ2-1', 1306: '24hpf Sample1_22', 1307: 'Dre_132_2hpf_PAL', 1308: 'adult_heart_0', 1309: '3P_Seq_PreMZT_2', 1310: '3P_Seq_PreMZT_3', 1311: 'NH_FLI_liver_96', 1312: '24hpf Sample3_71', 1313: 'NH_FLI_liver_98', 1314: 'Dre_155_4hpf_PAL', 1315: 'DMSO_control_1', 1316: 'DMSO_control_2', 1317: 'Wild type 5 hpf', 1318: 'Dre_132_2hpf_RPF', 1319: 'Wild type 7 hpf', 1320: 'hspGal4-36hpf-DP', 1322: 'Dre_132_6hpf_RPF', 1323: 'Dre_155_2hpf_RPF', 1324: 'ZMEL1 IN VITRO REP 1', 1325: 'ZMEL1 IN VITRO REP 2', 1326: '231A_GFP_plus_WB', 1327: 'NH_FLI_brain_113', 1328: 'NH_FLI_brain_132', 1329: '10C: DMSO vehicle', 1330: 'Biliatresone 1', 1331: 'Biliatresone 2', 1332: 'NH_FLI_brain_136', 1333: 'NH_FLI_brain_119', 1334: 'NH_FLI_brain_147', 1335: 'NH_FLI_brain_148', 1336: 'NH_FLI_brain_149', 1338: 'sMOsrsf5a_rep1', 1339: 'sMOsrsf5a_rep2', 1340: 'Alpha_cells_R3', 1343: 'Delta_cells_R2', 1344: 'Delta_cells_R3', 1345: 's854 3dpf GFP+ Rep1', 1346: 'Brain-Old-Male-1', 1347: 'NH_FLI_liver_120', 1348: 's854 4dpf GFP+ Rep3', 1349: 'E_reg-heart-3d-1', 1350: 's854 6dpf GFP- Rep1', 1351: 's854 6dpf GFP- Rep2', 1352: 's854 6dpf GFP- Rep3', 1353: 'NH_FLI_liver_126', 1354: 'NH_FLI_liver_109', 1355: 'Normal Embryo 4', 1356: 'NH_FLI_liver_147', 1357: 'salm_inf_1 (s_1)', 1358: 'cntl_neo_1hr_3', 1359: 'salm_inf_2 (s_2)', 1360: 'Control_3dpi_A', 1361: 'Control_3dpi_B', 1362: 'Control_3dpi_C', 1365: 'tre-sib-heart-1', 1366: 'tre-sib-heart-2', 1367: 'tre-sib-heart-3', 1376: 'Beta_cells_R1_1', 1377: 'Beta_cells_R1_2', 1378: 'Pineal_Dark_CT2', 1379: 'Zeb_Liv_Ac_Up_2', 1380: 'Zeb_Liv_Ac_Up_3', 1381: 'Wildtype_TCDD_6', 1382: 'Pineal_Dark_CT6', 1383: 'E_GFP and BSA set1', 1384: 'E_GFP and BSA set2', 1386: 'Zebrafish_28C_01', 1387: 'Zebrafish_28C_02', 1388: 'Zebrafish_28C_03', 1390: 'Liver-Control-1', 1391: 'Liver-Control-2', 1393: 'Miller_wt40.bam', 1397: 'Miller_wt80.bam', 1398: 'Wildtype_DMSO_3', 1399: 'Wildtype_DMSO_4', 1400: 'RESA-Seq - Mut 8h B2', 1401: 'E_reg-heart-12h-1', 1404: 'zcrest 1 50K cell', 1406: 'miRNA_GFP_minus', 1408: 'mylz RMS_MYLZ2-7a', 1409: 'mylz RMS_MYLZ2-8a', 1410: 'PCB126 BRAIN1 RNA-Seq', 1411: 'PCB126 BRAIN2 RNA-Seq', 1412: '14dpi RNAseq rep1', 1413: 'PCB126 BRAIN4 RNA-Seq', 1414: 'Diabetic 0h rep 2', 1415: 'Diabetic 0h rep 3', 1416: 'KO_Cryoinjury 1', 1417: 'KO_Cryoinjury 2', 1418: 'KO_Cryoinjury 3', 1419: 'KO_Cryoinjury 4', 1420: 'rap_replicate1', 1421: 'rap_replicate2', 1422: 'rap_replicate3', 1423: 'FemaleBody_Rep1', 1424: 'FemaleBody_Rep2', 1425: 'Pineal_Dark_CT10', 1426: 'adult_muscle_1', 1427: 'adult_muscle_2', 1428: 'Pineal_Dark_CT22', 1429: 'Pineal_Dark_CT14', 1430: 'Sample 8 - hlk - Z27', 1431: 'Zebrafish_152B_01', 1432: 'Zebrafish_152B_02', 1433: 'Pineal_Dark_CT18', 1434: 'Zebrafish_156A_01', 1435: 'Zebrafish_156A_02', 1436: 'C2_CGATGT_L001_R1_001', 1437: 'E_GFP and FGF8 set2', 1438: 'C4_CGATGT_L001_R1_001', 1439: 'B07_rx3_weak_ZT15', 1440: '0 hpl Replicate 3', 1441: 'C7_CGATGT_L001_R1_001', 1442: 'C8_CGATGT_L001_R1_001', 1443: 'ZF melanoma rep2', 1444: 'RESA-Seq - Mut 64c B1', 1445: 'RESA-Seq - Mut 64c B2', 1446: 'NH_FLI_brain_97+98', 1447: '8 hpl Replicate 2', 1448: '8 hpl Replicate 3', 1449: '20120724_RPF-Seq_Bud', 1450: 'M6_CGATGT_L001_R1_001', 1451: 'M7_CGATGT_L001_R1_001', 1452: 'M8_CGATGT_L001_R1_001', 1453: 'Stat3 zebrafish', 1456: 'wt control hybA', 1457: 'Ductal_cells_R1', 1458: 'Ductal_cells_R2', 1459: 'Ductal_cells_R3', 1460: 'NH_FLI_liver_93+94', 1461: '75 hpf RA sample 4B', 1463: '120A_GFP_plus_Tel', 1464: 'Diabetic 12h rep 1', 1465: 'Diabetic 12h rep 2', 1466: 'Diabetic 12h rep 3', 1467: 'Diabetic 24h rep 1', 1468: 'Diabetic 24h rep 2', 1469: 'Diabetic 24h rep 3', 1472: 'Zebrafish Liver', 1473: 'Diabetic 48h rep 1', 1474: 'Diabetic 48h rep 2', 1475: 'Diabetic 48h rep 3', 1479: 'Zebrafish-PGRP-SC', 1480: 'Treated_1_blood', 1481: 'Treated_2_blood', 1482: 'Treated_3_blood', 1483: 'Alpha_cells_R1_2', 1484: 'Alpha_cells_R2_2', 1486: 'Delta_cells_R1_1', 1487: 'Delta_cells_R1_2', 1488: 'ZMEL1 METASTATIC REP 1', 1489: 'ZMEL1 METASTATIC REP 2', 1490: 'Mixed Tissue Day', 1491: 'Miller_hox20.bam', 1493: 'Miller_hox40.bam', 1494: 'lsm8 mutant rep2', 1495: '16 hpl Replicate 3', 1496: 'Pineal_Light_CT2', 1497: 'Miller_hox80.bam', 1498: 'edn1-fli1a-sox10_1', 1499: 'edn1-fli1a-sox10_2', 1500: 'DMSO, 0.2 %. sample 134', 1501: 'DMSO, 0.2 %. sample 045', 1502: 'DMSO, 0.2 %. sample 109', 1504: 'Control_1_blood', 1505: 'Control_2_blood', 1506: 'Control_3_blood', 1507: 'Tu P0 Individual 1', 1508: '96 hpf AB tBOOH rep 1', 1509: '96 hpf AB tBOOH rep 2', 1510: '96 hpf AB tBOOH rep 3', 1512: 'Tel_Fad_Treated1', 1513: 'Tel_Fad_Treated2', 1514: 'Tel_Fad_Treated3', 1515: 'zebrafish_RPE_V2', 1516: 'rpeleye_77h_47_440', 1517: 'rpeleye_77h_48_440', 1518: 'NH_FLI_brain_103+104', 1519: 'Zebrafish ovary', 1520: 'zcrest 2 50K cells', 1521: 'hi559 Mutant Repl1', 1522: 'sperm cells rep1', 1523: 'hi559 Mutant Repl3', 1524: 'h62A_GFP_plus_Tel', 1531: 'SJD P0 Individual 1', 1532: 'dmso_replicate1', 1533: 'jag1b++-fli1a-sox10', 1535: '3P_PE_Seq_PostMZT', 1536: 'p53 M214K/M214K MPNST_73', 1537: 'p53 M214K/M214K MPNST_83', 1538: 'Tel_Fad_Control3', 1539: 'Trilostane+Fsh_3', 1540: 'Trilostane+Fsh_4', 1541: 'Trilostane+Fsh_5', 1542: 'Control (D) 0h rep 1', 1543: 'Control (D) 0h rep 2', 1544: 'Control (D) 0h rep 3', 1545: 'wt_sibling_rep1', 1546: 'Pineal_Light_CT22', 1547: 'Pineal_Light_CT14', 1549: 'Brain-Old-Female-1', 1550: 'Brain-Old-Female-2', 1551: 'Pineal_Light_CT18', 1552: 'jaw_tcdd_2h_rep1', 1553: 'B01_wild-type_ZT03', 1554: 'jaw_tcdd_2h_rep3', 1555: 'jaw_tcdd_4h_rep2', 1556: 'jaw_tcdd_4h_rep3', 1558: 'B03_wild-type_ZT15', 1560: 'B02_wild-type_ZT09', 1562: 'MC-LR 500 Replicate 1', 1563: 'MC-LR 500 Replicate 2', 1564: 'MC-LR 500 Replicate 3', 1566: 'control Low dose', 1567: '2h input mRNA run 2', 1569: '5h input mRNA run 1', 1570: 'wt_control_rep1', 1571: 'E_VHNF1 and FGF8 set2', 1575: 'Zebrafish Muscle', 1579: 'zmp_ph230_dgcr8_A1', 1580: 'zmp_ph230_dgcr8_A2', 1581: 'zmp_ph230_dgcr8_A3', 1582: 'zmp_ph230_dgcr8_A4', 1583: 'zmp_ph230_dgcr8_A5', 1584: 'Insulin 4 hpi rep2', 1585: 'Insulin 4 hpi rep3', 1586: 'Acinar_cells_R1_1', 1587: 'Acinar_cells_R1_2', 1588: 'Acinar_cells_R2_2', 1589: 'Zeb_Liv_Ac_Down_1', 1590: 'Zeb_Liv_Ac_Down_2', 1591: 'Zeb_Liv_Ac_Down_3', 1592: 'salm_contr_1 (s_3)', 1593: 'Control (D) 12h rep 1', 1594: '48hpf_con2 (ESD-14_N3)', 1595: '56hpf_con2 (ESD-20_N8)', 1596: 'Control (D) 24h rep 1', 1597: '3d, brain, day, rep1', 1598: 'Dre_mock_6hpf_RPF', 1599: '3d, brain, day, rep3', 1600: '56hpf_con1 (ESD-19_N6)', 1601: 'jaw_tcdd_12h_rep1', 1602: 'jaw_tcdd_12h_rep2', 1603: 'jaw_tcdd_12h_rep3', 1604: 'Control (D) 48h rep 3', 1605: 'tnpo3 mutant rep1', 1606: 'tnpo3 mutant rep2', 1607: 'Tumor [Sample_2e]', 1608: 'Tumor [Sample_2f]', 1609: '48 hpf AB Water rep 2', 1610: 'hen1 mutant polyA', 1611: '96 hpf AB Water rep 1', 1612: 'CONTROL LIVER2 RNA-Seq', 1613: 'CONTROL LIVER3 RNA-Seq', 1614: 'CONTROL LIVER4 RNA-Seq', 1615: '12h input mRNA run 1', 1616: '12h input mRNA run 2', 1618: '24h input mRNA run 1', 1619: 'zebrafish_WT_4h_1', 1620: 'zebrafish_WT_4h_2', 9813: 'Tg(hsp:70:dkk1-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep1', 9814: 'Tg(hsp:70:dkk1-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep2', 9815: 'Tg(hsp:70:dkk1-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep3', 1624: '48h input mRNA run 1', 1625: '48h input mRNA run 2', 1626: '48h input mRNA run 3', 1627: 'Control_3_muscle', 1628: 'h62A_GFP_minus_Tel', 1629: 'Control (MM) 0h rep 2', 1630: 'Sample 2 - hMYC-ER - Z10', 1632: 'Sample 3 - hMYC-ER - Z11', 1634: 'Dusp6 mutant 20 dpa', 1635: 'zmp_ph229_dicer_B1', 1636: 'zmp_ph229_dicer_C1', 1637: 'zmp_ph229_dicer_C2', 1638: 'zmp_ph229_dicer_C3', 1639: 'zmp_ph229_dicer_A6', 1640: 'zmp_ph229_dicer_A7', 1642: '(+)4SUTP_512cell_rep1', 1643: '10d, brain, day, rep1', 1644: '10d, brain, day, rep2', 1645: '10d, brain, day, rep3', 1646: '(+)4SUTP_128cell_rep2', 1647: '(+)4SUTP_256cell_rep1', 1648: '(+)4SUTP_256cell_rep2', 1649: 'Liver-Overfed-wt-2', 1650: 'Liver-Overfed-wt-3', 1651: 'Liver-Overfed-wt-4', 1652: '2 hpf AB Diquat rep 2', 1653: 'hspEdn1-fli1a-sox10', 1654: 'Liver-Overfed-wt-7', 1657: 'Pineal Gland Night', 1662: 'Mutant_HSC2_RNA-Seq', 1665: 'Control MO, 10s, rep1', 1666: 'Control MO, 10s, rep2', 1667: 'Control MO, 10s, rep3', 1668: '0dpa small RNA, rep 2', 1669: '0dpa small RNA, rep 3', 1670: 'Negative Control 2', 1671: '4dpa small RNA, rep 1', 1672: 'zmp_if3_1_reRNASeq', 1673: 'Apex Control 0 hpa 1', 1674: 'Apex Control 0 hpa 2', 1675: 'zmp_if3_4_reRNASeq', 1676: 'control high dose', 1677: 'hesx1_wildtype_B2', 1678: 'hesx1_wildtype_B3', 1679: 'Control (MM) 12h rep 1', 1680: 'Control (MM) 12h rep 2', 1681: 'Control (MM) 12h rep 3', 1682: 'hesx1_wildtype_B7', 1683: 'B09_rx3_strong_ZT03', 1684: 'Control (MM) 24h rep 3', 1686: 'brain: 1-WT36h_e1_le1', 1688: 'Control (MM) 48h rep 1', 1689: 'ddx39a_24hpf_RNAseq', 1690: 'snapc3 mutant rep2', 1691: 'snapc3 mutant rep3', 1694: 'F1 livers control 1', 1695: 'Zebrafish Embryos', 1696: 'zebrafish_SB_4.3h_3', 1697: '20120724_RPF-Seq_2-4Cell', 1699: 'GFP positive cells', 1701: 'GSM1108120: prdm1-/- rep3', 1705: 'kdrl:cxcr1-clutch1', 1706: 'GSM1108118: prdm1-/- rep1', 1707: '3d, pineal, day, rep2', 1708: 'Extract_wildtype', 1709: '5d, pineal, day, rep2', 1710: 'Mixed Tissue Night', 1711: '5d, pineal, day, rep4', 1712: '5d, pineal, day, rep5', 1713: '96 hpf AB Diquat rep 2', 1714: '96 hpf AB Diquat rep 3', 1716: 'HSC_Control_RNA-Seq', 1717: 'zebrafish_WT_4.3h_2', 1718: 'zebrafish_WT_4.3h_3', 1719: '3mo, brain, day, rep3', 1720: 'zmp_if3_10_reRNASeq', 1721: 'zmp_if3_20_reRNASeq', 1722: 'zmp_if3_30_reRNASeq', 1723: 'zmp_if3_31_reRNASeq', 1724: 'zmp_if3_32_reRNASeq', 1725: 'hesx1_wildtype_B11', 1726: 'hesx1_wildtype_B12', 1727: 'zmp_if3_17_reRNASeq', 1728: 'Fluoxetine_25_rep1', 1729: 'Fluoxetine_25_rep2', 1730: 'Fluoxetine_25_rep3', 1731: '1yr, brain, day, rep2', 1732: '1yr, brain, day, rep3', 1733: 'ZMP_phenotype_121_A', 1734: '4,7hpf MZ replicate 1', 1735: 'ZMP_phenotype_121_C', 1736: 'ZMP_phenotype_121_D', 1737: 'ZMP_phenotype_121_E', 1738: 'hi559 Wild Type Repl1', 1739: 'hi559 Wild Type Repl2', 1740: 'hi559 Wild Type Repl3', 1741: 'ZMP_phenotype_126_D', 1742: '4 hpi infected_rep1', 1743: '4 hpi infected_rep2', 1744: '4 hpi infected_rep3', 1745: '4 hpi infected_rep4', 1746: 'zmp_ph244_A02_plate3', 1747: 'zmp_ph244_C11_plate2', 1748: 'zmp_ph244_E11_plate1', 1749: 'zmp_ph244_E02_plate2', 1750: 'zmp_ph244_A08_plate1', 1751: 'zmp_ph244_A08_plate2', 1752: 'SET morfolino rep_1', 1753: 'SET morfolino rep_2', 1754: 'SET morfolino rep_3', 1755: 'zmp_ph244_C09_plate3', 1756: 'zmp_ph244_F07_plate3', 1757: 'YA_36hpf_rep1 (YA36_5-1)', 9950: 'Tg(hsp:70:wnt8a-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep3', 1759: 'GSM1108121: pbx2/4-MO rep1', 1760: 'zmp_ph228_drosha_A6', 1761: 'GSM1108122: pbx2/4-MO rep2', 1762: 'zmp_ph228_drosha_B7', 1763: 'GSM1108123: pbx2/4-MO rep3', 1765: 'Miller_vanglWT.bam', 1766: 'Heart, Control, rep2', 1767: 'Heart, Control, rep3', 1768: 'Heart, Control, rep4', 1769: 'wildtype ligation', 1771: 'Control Replicate 1', 1772: 'Control Replicate 2', 1773: 'Control Replicate 3', 1776: 'Fluoxetine_250_rep1', 1777: 'Fluoxetine_250_rep2', 1778: 'Brain_hypoxia-rep1', 1779: 'col9a2+ population 3', 1780: 'Brain_hypoxia-rep3', 1782: 'V_red_ZF_sample_0007', 1784: 'CH1_F_M_pooled_fish', 1785: 'WR_36hpf_rep1 (WR36_3-1)', 1786: 'CH3_F_M_pooled_fish', 1787: 'CH4_F_M_pooled_fish', 1788: 'ZF melanocytes rep1', 1789: 'wt zebrafish heart', 1790: 'ZF melanocytes rep3', 1791: '24 hpf pretreatment', 1792: 'YR_52hpf_rep2 (YR52_8-2)', 1793: 'Brain-Young-Female-2', 1794: 'Brain-Young-Female-3', 1795: 'Liver-Azacytidine-2', 1797: 'YR_36hpf_rep3 (YR36_7-3)', 1798: 'Liver-Azacytidine-5', 1799: 'Liver-Azacytidine-6', 1800: 'CW2_F_M_pooled_fish', 1801: 'CW3_F_M_pooled_fish', 1802: 'CW4_F_M_pooled_fish', 1804: 'zmp_ph228_drosha_B10', 1805: 'zmp_ph228_drosha_A12', 1806: 'zmp_ph228_drosha_B12', 1807: 'WH4_F_M_pooled_fish', 1811: 'SJDxTuF1 Individual 1', 1812: 'TuxSJDF2 Individual 1', 1813: 'TuxSJDF2 Individual 2', 1816: 'zebrafish_sham_12_1', 1817: 'zebrafish_sham_12_2', 1818: 'Control heart - rep 1', 1819: 'zebrafish_sham_24_1', 1820: 'zebrafish_sham_24_2', 1821: 'zebrafish_sham_24_3', 1822: 'zebrafish_28_gill_1', 1823: 'zebrafish_28_gill_2', 1824: 'A1_wild-type_ZT03_DEX', 1825: 'zebrafish_sham_48_1', 1826: '3mo, pineal, day, rep1', 1827: '3mo, pineal, day, rep2', 1828: '3mo, pineal, day, rep3', 1829: 'A3_wild-type_ZT15_DEX', 1831: 'A2_wild-type_ZT09_DEX', 1833: '2 hpf Nfe2 KO tBOOH rep 1', 1834: '2 hpf Nfe2 KO tBOOH rep 2', 1835: '2 hpf Nfe2 KO tBOOH rep 3', 1836: 'zmp_ph263_inf_6hpi_2', 1837: 'zmp_ph263_inf_6hpi_3', 1838: 'embryo_256-cell_rep1', 1839: '1yr, pineal, day, rep1', 1840: 'postnbCreERT2_7dpi_1', 1841: 'postnbCreERT2_7dpi_2', 1842: 'postnbCreERT2_7dpi_3', 1843: 'postnbCreERT2_7dpi_4', 1844: 'Heart, Resected, rep2', 1845: 'WA_52hpf_rep3 (WA52_2-3-2)', 1846: 'ZMP_phenotype_198_2r', 1847: 'ZMP_phenotype_198_3r', 1848: 'ZMP_phenotype_198_4r', 1849: 'Toddler mutant 4 hpf', 1850: 'ZMP_phenotype_198_6r', 1851: 'KSE_4_23_MT1_04242007_5-1_JC', 1852: 'Toddler mutant 7 hpf', 1853: 'Uninfected_rep2_10754', 1855: 'GSM1108117: control rep3', 1758: 'zmp_ph244_G09_plate2', 1859: 'ZMP_phentoype_110_1_1', 1860: 'ZMP_phentoype_110_1_2', 1861: 'ZMP_phentoype_110_1_3', 1862: 'ZMP_phentoype_110_1_4', 1863: 'ZMP_phentoype_110_1_5', 1864: 'ZMP_phentoype_110_1_6', 1865: 'ZMP_phentoype_110_1_7', 1866: 'ZMP_phentoype_110_1_8', 1867: 'ZMP_phenotype_180_1_2', 1868: 'ZMP_phenotype_180_1_3', 1869: 'ZMP_phenotype_133_1_6', 1870: 'ZMP_phenotype_180_1_5', 1871: 'ZMP_phenotype_180_1_6', 1872: 'ZMP_phenotype_180_1_7', 1873: 'ZMP_phenotype_128_1_6', 1874: 'ZMP_phenotype_180_1_9', 1875: 'ZMP_phenotype_128_1_8', 1876: 'ZMP_phenotype_128_1_9', 1877: 'ZMP_phenotype_129_1_9', 1878: 'ZMP_phenotype_197_1_5', 1879: 'ZMP_phenotype_197_1_6', 1880: 'ZMP_phenotype_197_1_7', 1881: 'ZMP_phenotype_197_1_8', 1882: 'ZMP_phenotype_197_1_9', 1883: 'zmp_ph263_inf_6hpi_10', 1884: 'zmp_ph263_inf_6hpi_20', 1885: 'zmp_ph263_inf_6hpi_21', 1886: 'zmp_ph263_inf_6hpi_22', 1887: 'zmp_ph263_inf_6hpi_23', 1888: 'zmp_ph263_inf_6hpi_24', 1889: 'zmp_ph264_inf_24hpi_6', 1890: 'zmp_phenotype_209_E2', 1891: 'zmp_phenotype_209_E3', 1892: 'zmp_ph264_inf_24hpi_9', 1893: 'ZMP_phenotype_198_10r', 1894: 'ZMP_phenotype_198_11r', 1895: 'ZMP_phenotype_198_21r', 1896: 'ZMP_phenotype_198_40r', 1897: 'ZMP_phenotype_198_23r', 1898: 'ZMP_phenotype_198_42r', 1899: 'zmp_phenotype_209_H8', 1900: 'ZMP_phenotype_198_44r', 1901: 'ZMP_phenotype_198_27r', 1902: 'ZMP_phenotype_198_37r', 1903: 'ZMP_phenotype_198_47r', 10096: 'Tg(hsp701;dnfgfr1-EGFP) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep2', 10097: 'Tg(hsp701;dnfgfr1-EGFP) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep3', 10098: 'Tg(hsp701;dnfgfr1-EGFP) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep4', 1907: 'ZMP_phentoype_110_1_10', 1908: 'ZMP_phentoype_110_1_20', 1909: 'ZMP_phentoype_110_1_21', 1910: 'ZMP_phentoype_110_1_22', 1911: 'lef1-/-_3 dpf rep1 (10688X2)', 1912: 'ZMP_phentoype_110_1_24', 1913: 'ZMP_phenotype_152_1_10', 1914: 'ZMP_phenotype_152_1_11', 1915: 'ZMP_phenotype_152_1_12', 1916: 'ZMP_phenotype_152_1_13', 1917: 'ZMP_phenotype_152_1_14', 1918: 'ZMP_phenotype_152_1_15', 1919: 'ZMP_phenotype_152_1_16', 1920: 'ZMP_phenotype_152_1_17', 1921: 'ZMP_phenotype_152_1_18', 1922: 'ZMP_phenotype_236_1_61', 1923: 'ZMP_phenotype_236_1_62', 1924: 'ZMP_phenotype_236_1_63', 1925: 'ZMP_phenotype_236_1_28', 1926: 'ZMP_phenotype_236_1_29', 1927: 'ZMP_phenotype_236_1_66', 1928: 'ZMP_phenotype_237_1_48', 1929: 'ZMP_phenotype_236_1_68', 1930: 'ZMP_phenotype_236_1_69', 1931: 'ZMP_phenotype_189_1_18', 1932: 'ZMP_phenotype_189_1_19', 1933: 'zmp_phenotype_209_A10', 1934: 'zmp_phenotype_209_A11', 1935: 'zmp_phenotype_209_A12', 1936: 'zmp_ph264_inf_24hpi_14', 1937: 'zmp_ph264_inf_24hpi_15', 1938: '2 hpf Nfe2 KO Water rep 3', 1939: 'zmp_phenotype_209_F11', 1940: 'zmp_phenotype_209_F12', 1941: 'zmp_phenotype_209_G12', 1942: 'MZ at 1 hpf replicate 2', 1943: 'Uninjured RNAseq rep2', 1944: 'enptd5a+ population 1', 1945: 'enptd5a+ population 2', 1946: 'enptd5a+ population 3', 1947: 'WT at 3 hpf replicate 1', 1948: 'WT at 4 hpf replicate 1', 1949: 'WT at 3 hpf replicate 3', 1950: '1yr, brain, night, rep1', 1951: '1yr, brain, night, rep2', 1952: '1yr, brain, night, rep3', 1953: 'A8_rx3_strong_ZT21_DEX', 1954: 'DSW, vehicle. sample 053', 1955: 'A7_rx3_strong_ZT15_DEX', 1957: 'DSW, vehicle. sample 128', 1958: 'DSW, vehicle. sample 147', 1959: 'DSW, vehicle. sample 148', 1960: 'DSW, vehicle. sample 059', 1961: 'Danio_rerio_SnapC_WT', 1962: '1 dpi uninfected_rep1', 1963: '1 dpi uninfected_rep2', 1964: '3 dpi uninfected_rep1', 1965: '3 dpi uninfected_rep2', 1966: '5 dpi uninfected_rep1', 1967: '5 dpi uninfected_rep2', 1968: '5 dpi uninfected_rep3', 1969: '5 dpi uninfected_rep4', 1970: '2 hpi uninfected_rep4', 1971: '6 hpi uninfected_rep1', 1972: '6 hpi uninfected_rep2', 1973: '6 hpi uninfected_rep3', 10166: 'Wild type retina with retinal pigment epithelium attached, 52hpf, pool of 10 tiss, bio rep 3 WRR_52hpf_rep3 (WRR52_4)', 1975: '8 hpi uninfected_rep3', 1976: '8 hpi uninfected_rep4', 1985: 'zebrafish wild type 1', 1986: 'zebrafish wild type 2', 1992: 'zmp_ph263_mock_6hpi_10', 1993: 'zmp_ph263_mock_6hpi_11', 1994: '10L: 5 ug/l PCP treatment', 1995: '48 hpf Nfe2 KO Water rep 2', 1996: 'male brain 121, control', 1997: 'zmp_ph263_mock_6hpi_15', 1998: 'Prim-5_5mM MTBE, bio rep 1', 1999: 'zmp_ph263_mock_6hpi_17', 2000: 'zmp_ph263_mock_6hpi_18', 2001: 'male brain 108, control', 2002: 'Brain from SH Male rep 1', 2003: 'Brain from SH Male rep 2', 10196: 'Tg(hsp:70:DeltaTcF-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep4', 2013: 'whole ovary-10ppb TCDD-1', 2014: 'whole ovary-10ppb TCDD-2', 2016: 'whole ovary-40ppb TCDD-1', 2017: 'whole ovary-40ppb TCDD-2', 2018: 'zebrafish brain8 high', 2019: 'zebrafish brain9 high', 2020: 'zebrafish_8_0h_gill_2', 2021: 'zebrafish_8_0h_gill_3', 2024: 'wild type, replicate 1', 2025: 'zebrafish_8_6h_gill_1', 2026: 'zebrafish_8_6h_gill_2', 2027: 'zebrafish_8_6h_gill_3', 2028: 'mitf-BRAFV600E;p53-/- skin 2', 2029: 'mitf-BRAFV600E;p53-/- skin 3', 2030: 'mitf-BRAFV600E;p53-/- skin 4', 2031: 'mitf-BRAFV600E;p53-/- skin 5', 2032: 'mitf-BRAFV600E;p53-/- skin 6', 2036: 'Danio_rerio_SnapC_MUT', 2037: '2 hpf Nfe2 KO Diquat rep 1', 2038: '2 hpf Nfe2 KO Diquat rep 2', 2039: 'MZ at 2,5 hpf replicate 1', 2041: 'zmp_ph264_mock_24hpi_10', 2042: 'zmp_ph264_mock_24hpi_11', 2043: 'zmp_ph264_mock_24hpi_12', 2044: 'zmp_ph264_mock_24hpi_13', 2045: 'WT at 2,5 hpf replicate 3', 2046: 'zmp_ph264_mock_24hpi_15', 2047: 'zmp_ph264_mock_24hpi_16', 2048: 'zmp_ph264_mock_24hpi_17', 2049: 'zmp_ph264_mock_24hpi_18', 2050: 'zmp_ph264_mock_24hpi_19', 2051: 'Adefovir, 100 M. sample 072', 2052: 'Zebrafish adult brain', 2055: '1-cell, polysome-bound', 2057: 'Brain from TM1 Male rep 1', 2058: 'Brain from TM1 Male rep 2', 2059: '1yr, pineal, night, rep1', 2060: '1yr, pineal, night, rep2', 2061: '1yr, pineal, night, rep3', 2062: 'whole ovary-100ppb TCDD-2', 2069: 'zebrafish_han_WT_Rep1', 2070: 'zebrafish_han_WT_Rep2', 2071: '5.3 hpf, unfractionated', 2072: 'zebrafish_8_12h_gill_3', 2074: 'Adult zebrafish liver', 2075: 'MZ in ovary replicate 3', 2077: 'WT in ovary replicate 1', 2079: 'egg, polysome-unbound', 2080: 'body 73hpf TCDD rep1_hyb1', 2081: '1-cell, unfractionated', 2082: 'body 73hpf TCDD rep2_hyb2', 2083: 'kdrl:egfp-pos microRNA', 2084: 'body 73hpf TCDD rep3_hyb3', 2085: 'Zcrest input for H3K27Ac', 2086: 'body 84hpf TCDD rep3_hyb3', 2087: 'body 76hpf TCDD rep3_hyb3', 2088: '24H: 200 ug/l PCP treatment', 2091: '5 \xce\xbcg/l BDE47 treatment', 2092: 'Sox10_RNASeq_Ribo_16ss_2', 2095: '48 hpf Nfe2 KO Diquat rep 1', 2096: '48 hpf Nfe2 KO Diquat rep 2', 2097: '48 hpf Nfe2 KO Diquat rep 3', 2098: '96 hpf Nfe2 KO Diquat rep 1', 2099: '96 hpf Nfe2 KO Diquat rep 2', 2100: 'Mock-infected_rep2_10757', 2101: 'body 74hpf DMSO rep1_hyb1', 2102: 'body 73hpf DMSO rep2_hyb2', 2103: 'cFD + spt cMO_replicate 1', 2104: 'body 73hpf DMSO rep3_hyb3', 2105: 'body 74hpf DMSO rep3_hyb3', 2106: 'cFD + spt cMO_replicate 4', 2107: 'cFD + spt cMO_replicate 5', 2120: 'Paraquat, 10 mM. sample 110', 2123: 'WT skin transcriptome', 2124: 'IonXpressRNA_001_up_058_1', 2125: 'Paraquat, 10 mM. sample 043', 2126: 'IonXpressRNA_002_up_058_2', 2128: 'IonXpressRNA_003_up_058_3', 2129: 'Paraquat, 10 mM. sample 119', 2130: 'IonXpressRNA_004_up_058_4', 2132: 'IonXpressRNA_005_up_058_5', 2134: 'IonXpressRNA_006_up_058_6', 2135: '16-cell, unfractionated', 2136: 'IonXpressRNA_007_up_058_7', 2138: 'IonXpressRNA_008_up_058_8', 2140: 'IonXpressRNA_009_up_058_9', 2141: 'Zebrafish pineal gland', 2146: 'Zebrafish_MZ Dicer_Rep1', 2147: 'Zebrafish_MZ Dicer_Rep2', 2148: 'Zebrafish_MZ Dicer_Rep3', 2152: 'Sox10_RNASeq_Nuclear_18s', 2155: 'Wild-type AB strain rep1', 10350: 'Tg(UAS:myc-notch1a-intra)xTg(hsp70;gal4VP16) embryos heat-shocked for 1 hour dissected after 90 mins, biological rep1', 10351: 'Tg(UAS:myc-notch1a-intra)xTg(hsp70;gal4VP16) embryos heat-shocked for 1 hour dissected after 90 mins, biological rep2', 10352: 'Tg(UAS:myc-notch1a-intra)xTg(hsp70;gal4VP16) embryos heat-shocked for 1 hour dissected after 90 mins, biological rep3', 10353: 'Tg(UAS:myc-notch1a-intra)xTg(hsp70;gal4VP16) embryos heat-shocked for 1 hour dissected after 90 mins, biological rep4', 2166: 'postnb_citrine_7dpi_10', 2167: 'Animalpole_RNAseq [SMA3]', 2168: 'Prim-5_Control, bio rep 1', 2169: 'Prim-5_Control, bio rep 2', 2170: 'Prim-5_Control, bio rep 3', 2172: 'postnb_citrine_7dpi_07', 2174: 'IonXpressRNA_011_up_058_11', 2176: 'Paraquat, 1.1 mM. sample 083', 2177: 'Paraquat, 1.1 mM. sample 039', 2178: 'Paraquat, 3.3 mM. sample 090', 2179: 'Paraquat, 1.1 mM. sample 167', 2181: 'Paraquat, 3.3 mM. sample 075', 2182: 'heart 73hpf TCDD rep1_hyb1', 2183: 'heart 74hpf TCDD rep1_hyb1', 2184: 'Isoniazid, 5 mM. sample 111', 2185: 'control_3 dpf rep2 (10688X3)', 2186: 'heart 84hpf TCDD rep2_hyb2', 2187: 'heart 76hpf TCDD rep2_hyb2', 2188: 'control_3 dpf rep3 (10688X5)', 2189: 'heart 76hpf TCDD rep3_hyb3', 2190: 'D-Mannitol, 3 mM. sample 011', 2191: 'Isoniazid, 5 mM. sample 172', 2192: 'D-Mannitol, 3 mM. sample 022', 2194: 'Wild-type siblings rep1', 2195: 'Isoniazid, 5 mM. sample 086', 2196: 'Isoniazid, 5 mM. sample 087', 2197: 'D-Mannitol, 3 mM. sample 171', 2198: 'famale brain 133, control', 2199: 'D-Mannitol, 3 mM. sample 164', 2202: 'female brain 124, control', 2203: 'heart 74hpf DMSO rep1_hyb1', 2204: 'Testis from Danio rerio', 2205: 'heart 74hpf DMSO rep2_hyb2', 2206: 'heart 84hpf DMSO rep2_hyb2', 2207: 'heart 74hpf DMSO rep3_hyb3', 2208: 'heart 84hpf DMSO rep3_hyb3', 2209: 'Amioderone, 10 M. sample 031', 2210: 'zebrafish_han_Mut_Rep3', 2211: 'Liver-Control-ahcy het-3', 2213: 'Amioderone, 10 M. sample 035', 2214: 'Gata5 morphant, bud, rep 1', 2215: 'Amioderone, 10 M. sample 118', 2216: 'Liver-Control-ahcy het-8', 2217: 'Zebrafish-control siRNA', 2218: 'Amioderone, 10 M. sample 049', 2227: 'ZF_Ablated_Hearts_1 (TAM-1)', 2229: 'ZF_Ablated_Hearts_2 (TAM-2)', 2233: 'Metabolic memory 0h rep 1', 2234: 'Metabolic memory 0h rep 2', 2235: 'Metabolic memory 0h rep 3', 2237: 'il7r-/- larvae at 4dpf rep1', 2238: 'il7r-/- larvae at 4dpf rep2', 2239: 'il7r-/- larvae at 4dpf rep3', 2244: 'Liver 0% carb Female fish10', 2245: 'skin160 36m control 3w rep1', 2247: 'skin158 12m control 3w rep2', 2248: 'skin182 12m control 8w rep1', 2249: 'skin159 12m control 3w rep3', 2250: 'Liver 0% carb Female fish25', 2252: 'Liver 0% carb Female fish27', 2253: 'Liver 25% carb Female fish3', 2254: 'Control morfolino rep_2', 10447: 'Danio rerio: Large-harvested line, biological replicate 1, F2 offspring originating from wild caught population', 10448: 'Danio rerio: Large-harvested line, biological replicate 2, F2 offspring originating from wild caught population', 2257: 'Amioderone, 1.1 M. sample 113', 10450: 'Danio rerio: Large-harvested line, biological replicate 1, F5 offspring originating from wild caught population', 2259: 'skin186 36m control 8w rep2', 2260: 'Brain from TM1 Female rep 1', 2261: 'skin187 36m control 8w rep3', 2262: 'Amioderone, 3.3 M. sample 060', 2263: 'skin188 36m control 8w rep4', 2265: 'Amioderone, 1.1 M. sample 157', 2268: 'Amioderone, 1.1 M. sample 169', 2270: 'Amioderone, 1.1 M. sample 189', 2271: 'Amioderone, 3.3 M. sample 186', 2272: '5.3 hpf, polysome-unbound', 2273: 'Bactin_RNASeq_Ribo_16ss_1', 2274: 'Bactin_RNASeq_Ribo_16ss_2', 2277: 'Isoniazid, 0.5 mM. sample 020', 2282: 'Isoniazid, 0.5 mM. sample 052', 2284: 'Metabolic memory 12h rep 1', 2285: 'Metabolic memory 12h rep 2', 2286: 'Metabolic memory 12h rep 3', 2287: 'Isoniazid, 0.5 mM. sample 174', 2288: 'Metabolic memory 24h rep 2', 2289: 'Metabolic memory 24h rep 3', 2292: 'Prim-5_0.00625mM MTBE, bio rep 1', 2293: 'Prim-5_0.00625mM MTBE, bio rep 2', 2294: 'Prim-5_0.00625mM MTBE, bio rep 3', 2295: 'Metabolic memory 48h rep 3', 2296: 'RESA-CLIP Ago2 - RESA-CLIP Ago2 IP', 2297: 'female brain 122, selenium', 2299: 'Low dose gamma radiation', 2300: 'Liver 25% carb Female fish20', 2302: 'zebrafish granulocytes', 10495: 'Danio rerio: Large-harvested line, biological replicate 1, F11 offspring originating from wild caught population', 2304: 'Liver 25% carb Female fish51', 2305: 'ZMP_phenotype_131_1_pool2', 2306: 'ZMP_phenotype_115_1_pool1', 2307: 'ZMP_phenotype_115_1_pool2', 2308: 'ZMP_phenotype_115_1_pool3', 2309: 'ZMP_phenotype_115_1_pool4', 2310: 'ZMP_phenotype_128_1_pool1', 2311: 'ZMP_phenotype_129_1_pool1', 2312: 'ZMP_phenotype_129_1_pool2', 2313: 'ZMP_phenotype_129_1_pool3', 2314: 'ZMP_phenotype_129_1_pool4', 2315: 'ZMP_phenotype_129_1_pool5', 2316: 'ZMP_phenotype_129_1_pool6', 2317: 'ZMP_phenotype_129_1_pool7', 2318: 'ZMP_phenotype_129_1_pool8', 2319: 'ZMP_phenotype_129_1_pool9', 2324: 'Brain from Nadia Male rep 1', 2325: 'Brain from Nadia Male rep 2', 2332: 'brain157 12m control 3w rep1', 2333: 'transected spinal cord a', 2334: 'brain161 36m control 3w rep2', 2335: 'brain182 12m control 8w rep1', 2336: '16-cell, polysome-unbound', 2337: 'brain183 12m control 8w rep2', 2338: 'GFP minus, biological rep1', 2339: 'brain184 12m control 8w rep3', 2340: 'Isoniazid, 1.67 mM. sample 143', 2343: 'Isoniazid, 1.67 mM. sample 074', 2344: 'brain185 36m control 8w rep1', 9948: 'Tg(hsp:70:wnt8a-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep1', 2346: 'brain186 36m control 8w rep2', 2348: 'control retina T0-sample5', 2349: 'control retina T0-sample6', 2350: 'control retina T0-sample7', 2351: 'ZMP_phenotype_130_1_pool10', 2352: 'ZMP_phenotype_130_1_pool11', 2353: 'ZMP_phenotype_130_1_pool12', 2354: 'ZMP_phenotype_124_1_pool10', 2355: 'liver161 36m control 3w rep1', 2356: 'ZMP_phenotype_124_1_pool12', 2357: 'ZMP_phenotype_127_1_pool10', 2358: 'Input mRNA-Seq MZdicer 6hpf', 2359: 'ZMP_phenotype_129_1_pool10', 2360: 'ZMP_phenotype_128_1_pool12', 2361: 'wild-type, polysomal mRNA', 2363: '6-somites_5mM MTBE, bio rep 1', 2364: '6-somites_5mM MTBE, bio rep 2', 2365: '6-somites_5mM MTBE, bio rep 3', 2366: 'wild-type_AB_sphere_rep1', 2367: 'wild-type_AB_sphere_rep2', 2368: 'zebrafish_resection_24_3', 2371: 'liver188 36m control 8w rep3', 2372: 'zebrafish_resection_48_1', 2373: 'zebrafish_resection_48_2', 2374: 'zebrafish_resection_48_3', 2375: 'Treated_1 caudal_fin_4dpa', 10568: 'Danio rerio: Random-harvested line, biological replicate 1, F5 offspring originating from wild caught population', 2377: 'High dose gamma radiation', 2380: 'Wild type 2 hpf replicate 1', 2381: 'Wild type 2 hpf replicate 2', 2382: 'Wild type 4 hpf replicate 1', 2383: 'Wild type 4 hpf replicate 2', 2384: 'Wild type 6 hpf replicate 1', 2385: 'Wild type 6 hpf replicate 2', 2388: '128-cell, polysome-unbound', 2395: 'Control_1 caudal_fin_0dpa', 2396: 'control retina T12-sample2', 2397: 'Control_1 caudal_fin_2dpa', 2398: 'control retina T12-sample4', 2399: 'control retina T24-sample2', 2400: 'control retina T24-sample3', 2401: 'control retina T24-sample4', 2405: 'control retina T48-sample2', 2406: '5h RPFs sucrose replicate 1', 2407: 'Cyclosporin A, 2 M. sample 033', 2408: 'Cyclosporin A, 6 M. sample 012', 2409: 'Sox10_RNASeq_Nuclear_16ss_1', 2410: 'Sox10_RNASeq_Nuclear_16ss_2', 2412: 'Chorpromazin, 1 M. sample 123', 2413: 'Cyclosporin A, 2 M. sample 093', 2414: 'Chorpromazin, 3 M. sample 051', 2415: 'Chorpromazin, 3 M. sample 070', 2416: 'Chorpromazin, 1 M. sample 154', 2417: 'ZF_Uninjured_Hearts_2 (PG-2)', 2418: 'zebrafish crestin EGFP neg', 2419: 'WT 3.5dpf zebrafish muscle 1', 2420: 'WT 3.5dpf zebrafish muscle 2', 2421: 'WT 3.5dpf zebrafish muscle 3', 10614: 'Danio rerio: Random-harvested line, biological replicate 2, F11 offspring originating from wild caught population', 2429: 'Brain_isolated_30min_rep1', 2430: '142ab-/- WKMs, biological rep 1', 2431: '142ab-/- WKMs, biological rep 2', 2432: 'mitf-BRAFV600E;p53-/- melanoma 1', 2433: 'Danio_Liver_Control_2 (2LC2)', 2434: 'mitf-BRAFV600E;p53-/- melanoma 3', 2435: 'mitf-BRAFV600E;p53-/- melanoma 4', 2436: 'mitf-BRAFV600E;p53-/- melanoma 5', 2437: 'Danio_Liver_Control_4 (2LC4)', 2439: 'Danio_Liver_Starved_1 (2LS1)', 2441: 'Danio_Liver_Starved_2 (2LS2)', 2443: 'Danio_Liver_Starved_3 (2LS3)', 2445: 'Danio_Liver_Starved_4 (2LS4)', 2446: 'morpholino control [mRNA]', 2447: 'Danio_Liver_Starved_5 (2LS5)', 2451: 'Input mRNA-Seq MZdicer 4hpf-2', 2452: 'myd88+/+_M. marinum infected', 2455: 'eif3ha morphant, total mRNA', 2456: 'myd88-/-_M. marinum infected', 2459: 'Non-fluorescent 1 hpCu rep1', 2460: 'Non-fluorescent 1 hpCu rep2', 2461: 'Non-fluorescent 1 hpCu rep3', 2462: 'Non-fluorescent 1 hpCu rep4', 2463: 'Non-fluorescent 1 hpCu rep5', 2464: 'Non-fluorescent 1 hpCu rep6', 2465: 'Non-fluorescent 1 hpCu rep7', 2466: 'Non-fluorescent 5 hpCu rep4', 2467: 'Valproic Acid, 200 M. sample 160', 2468: 'Valproic Acid, 200 M. sample 107', 2469: 'Valproic Acid, 600 M. sample 131', 2470: 'Valproic Acid, 600 M. sample 006', 2474: 'GSM1108124: pbx2/4-MO; prdm1-/- rep1', 2476: 'ZebrafishEmbyos_GP250~0-48_48', 2478: 'GSM1108126: pbx2/4-MO; prdm1-/- rep3', 2487: 'Tetracycline, 200 M. sample 104', 2488: 'Tetracycline, 200 M. sample 015', 2489: 'Danio_Brain_Control_2 (X2BC2)', 2491: 'Danio_Brain_Control_3 (X2BC3)', 2493: 'Danio_Brain_Control_4 (X2BC4)', 2495: 'Danio_Brain_Starved_1 (X2BS1)', 2497: 'Tetracycline, 200 M. sample 078', 2499: 'Danio_Brain_Starved_3 (X2BS3)', 2501: 'Danio_Brain_Starved_4 (X2BS4)', 2508: 'Non-fluorescent 11 hpCu rep1', 2509: 'Non-fluorescent 11 hpCu rep2', 2510: 'Non-fluorescent 11 hpCu rep3', 2511: 'Non-fluorescent 11 hpCu rep4', 2513: 'col9a2/entpd5a+ population 1', 2514: 'col9a2/entpd5a+ population 2', 2515: 'col9a2/entpd5a+ population 3', 2520: 'ZebrafishEmbyos_FM250~24-72_72', 2521: 'Zebrafish Embryo small RNAs', 2522: 'kdrl_mCherry_uninjured_02', 2523: 'kdrl_mCherry_uninjured_03', 2524: 'ZebrafishEmbyos_GP250~24-72_72', 2527: 'zebrafish_control_WT_Rep1', 2528: 'ZebrafishEmbyos_PK250~24-72_72', 2531: 'Dpf3 morpholino zebrafish 1', 2532: 'Microglia control (Sample 9)', 2533: 'mutant control replicate 2', 2534: 'mutant control replicate 3', 2535: '6-somites_Control, bio rep 3', 2536: 'Valproic Acid, 66.7 M. sample 058', 2538: 'Valproic Acid, 66.7 M. sample 069', 2539: 'Valproic Acid, 66.7 M. sample 079', 2542: 'ZebrafishEmbyos_GP250~48-96_96', 2543: 'zebrafish crestin EGFP + 15 ss', 2544: 'GFP+ Hair cell untreated rep1', 2545: 'GFP+ Hair cell untreated rep2', 2548: 'Tetracycline, 66.7 M. sample 030', 2550: 'Input mRNA-Seq Wild type 2hpf', 2552: 'Input mRNA-Seq Wild type 4hpf', 2554: 'Input mRNA-Seq Wild type 6hpf', 2556: 'Tetracycline, 66.7 M. sample 047', 2557: 'Tetracycline, 66.7 M. sample 156', 2558: 'Tetracycline, 66.7 M. sample 094', 2560: 'Chorpromazin, 0.33 M. sample 124', 2561: '6-somites_0.625mM MTBE, bio rep 1', 2562: '6-somites_0.625mM MTBE, bio rep 2', 2563: '6-somites_0.625mM MTBE, bio rep 3', 2564: '75 hpf control/dmso sample 4A', 2569: 'Ruz 3.5dpf zebrafish muscle 1', 2570: 'Ruz 3.5dpf zebrafish muscle 2', 2571: 'Ruz 3.5dpf zebrafish muscle 3', 2574: 'Acetaminophen, 220 M. sample 014', 2578: 'Acetaminophen, 220 M. sample 009', 2579: '21-somites_Control, bio rep 2', 2580: '21-somites_Control, bio rep 3', 2585: 'Acetaminophen, 660 M. sample 170', 2586: 'Nr21 danrer skin 5months rep1', 2587: 'Acetaminophen, 660 M. sample 037', 2588: 'Nr22 danrer skin 5months rep2', 2590: 'Nr23 danrer skin 5months rep3', 2591: 'Bactin_RNASeq_Nuclear_16ss_1', 2592: 'Tetracycline, 22.22 M. sample 019', 2593: 'Nr25 danrer skin 5months rep4', 2594: 'Nr30 danrer skin 5months rep9', 2595: 'Nr26 danrer skin 5months rep5', 2597: 'Tetracycline, 22.22 M. sample 177', 2599: 'Nr28 danrer skin 5months rep7', 2601: 'Zebrafish Embryo_50% epiboly', 2606: 'Zebrafish adult head kidney', 2607: '21-somites_0.625mM MTBE, bio rep 2', 2608: '21-somites_0.625mM MTBE, bio rep 3', 2612: 'tet2-/-;tet3-/- mutants at 36hpf', 2615: 'ZebrafishEmbyos_Control~48', 2616: 'MZdicer 6h miR-430_Ago_hairpin', 2624: 'Thioacetamide, 10 mM. sample 125', 2626: 'Thioacetamide, 10 mM. sample 082', 2627: 'Thioacetamide, 10 mM. sample 056', 2631: 'Thioacetamide, 10 mM. sample 168', 2632: 'Acetaminophen, 73.3 M. sample 062', 2634: 'Acetaminophen, 73.3 M. sample 163', 2635: 'Acetaminophen, 73.3 M. sample 155', 2636: 'Nr12 danrer skin 42months rep2', 2637: 'Acetaminophen, 73.3 M. sample 085', 2638: 'Nr13 danrer skin 42months rep3', 2639: 'Nr70 danrer skin 24months rep1', 2640: 'zebrafish_SU5402 treated_Rep1', 2641: 'zebrafish_SU5402 treated_Rep2', 2643: 'Nr72 danrer skin 24months rep3', 2645: 'Input mRNA-Seq Wild type 2hpf-2', 2647: 'Input mRNA-Seq Wild type 4hpf-2', 2648: 'Nr75 danrer skin 24months rep5', 2649: 'Input mRNA-Seq Wild type 6hpf-2', 2650: 'Nr76 danrer skin 24months rep6', 2653: 'Anp32e_INJ_PostZGA_RNA-Seq_Rep1', 2654: 'Anp32e_INJ_PostZGA_RNA-Seq_Rep2', 2657: '6-somites_0.00625mM MTBE, bio rep 1', 2658: '6-somites_0.00625mM MTBE, bio rep 2', 2659: '6-somites_0.00625mM MTBE, bio rep 3', 2660: 'Non-injected 5 DPI, biol. repl. 3', 2661: 'Non-injected 5 DPI, biol. repl. 4', 2665: 'GFP positive, biological rep1', 2666: 'GFP positive, biological rep2', 2667: 'GFP positive, biological rep3', 2669: 'Thioacetamide, 1.1 mM. sample 132', 2671: 'Thioacetamide, 1.1 mM. sample 044', 2672: 'Thioacetamide, 1.1 mM. sample 180', 2673: 'Thioacetamide, 3.3 mM. sample 114', 2674: 'jaw_vehicle control_1h_rep2', 2675: 'Thioacetamide, 3.3 mM. sample 017', 2676: 'Thioacetamide, 3.3 mM. sample 117', 2677: 'jaw_vehicle control_4h_rep2', 2678: 'Thioacetamide, 3.3 mM. sample 191', 2679: 'wild type retina sample 3 (WR3)', 2684: 'Thioacetamide, 3.3 mM. sample 098', 2693: 'General Sample for zebrafish', 2702: '21-somites_0.00625mM MTBE, bio rep 1', 2703: 'RESA-CLIP Ago2 - RESA-CLIP Ago2 input', 2704: '21-somites_0.00625mM MTBE, bio rep 3', 2710: 'Anp32e_Null_Sperm_RNA-Seq_Rep1', 2711: 'Anp32e_Null_Sperm_RNA-Seq_Rep2', 2723: 'jaw_vehicle control_12h_rep1', 2724: 'jaw_vehicle control_12h_rep2', 2725: 'WT 30% epiboly stage replicate1', 2726: 'Zebrafish adult swim bladder', 2728: 'WT 60% epiboly stage replicate1', 2729: 'WT 60% epiboly stage replicate2', 2730: 'zMNCs, day 0, replicate A, batch 1', 2731: 'zMNCs, day 0, replicate A, batch 2', 2732: 'zMNCs, day 1, replicate B, batch 1', 2733: 'zMNCs, day 1, replicate B, batch 2', 2734: 'zMNCs, day 4, replicate A, batch 1', 2735: 'zMNCs, day 4, replicate A, batch 2', 2736: 'zMNCs, day 4, replicate B, batch 2', 2737: 'zMNCs, day 7, replicate A, batch 1', 2738: 'zMNCs, day 7, replicate A, batch 2', 2739: 'Dusp6 mutant heart uninjured', 2740: 'zMNCs, day 7, replicate C, batch 2', 2741: 'zMNCs, day 7, replicate D, batch 2', 2742: '5h RPFs column replicate 1 run 1', 2743: '5h RPFs column replicate 1 run 2', 2744: '5h RPFs column replicate 1 run 3', 2745: '5h RPFs column replicate 2 run 3', 2749: 'wildtype control replicate 1', 2750: 'wildtype control replicate 2', 2751: 'wildtype control replicate 3', 2753: 'Brain from Gaighatta Male rep 1', 2754: 'Brain from Gaighatta Male rep 2', 2757: 'Control Adult Zebrafish Brain', 2761: 'crestin (+) scale 1 [gene-level]', 2762: 'crestin (+) scale 2 [gene-level]', 2763: 'crestin (+) scale 3 [gene-level]', 2764: 'crestin (-) scale 2 [gene-level]', 2765: 'crestin (-) scale 3 [gene-level]', 2770: 'Gata5 morphant, 6-somites, rep 1', 2771: 'Gata6 morphant, 6-somites, rep 1', 2772: 'Gata6 morphant, 6-somites, rep 2', 2777: 'skin203 36m 3.75nM rotenone 8w rep1', 2779: 'skin171 36m 3.75nM rotenone 3w rep4', 2780: 'zMNCs, day 10, replicate B, batch 1', 2781: 'zMNCs, day 10, replicate B, batch 2', 2782: 'zMNCs, day 10, replicate C, batch 2', 2783: 'skin206 36m 3.75nM rotenone 8w rep4', 2784: 'zMNCs, day 14, replicate B, batch 1', 2785: 'skin207 36m 3.75nM rotenone 8w rep5', 2787: 'skin208 36m 3.75nM rotenone 8w rep6', 2788: 'crestin (+) scale 1 [exon-level]', 2789: 'crestin (+) scale 2 [exon-level]', 2790: 'crestin (-) scale 1 [exon-level]', 2791: 'crestin (-) scale 2 [exon-level]', 2792: 'crestin (-) scale 3 [exon-level]', 2794: 'wild-type control replicate 1', 2795: 'zebrafish 12hpf Ovo1 morphant-1', 2796: 'wild-type control replicate 3', 2797: 'zebrafish 12hpf Ovo1 morphant-3', 2808: 'zebrafish mpx:EGFP +, 72 hpf [EH_G]', 2810: 'Unamputated adult caudal fin 1', 2811: 'Unamputated adult caudal fin 2', 2812: 'ptpn6 morphant_infected_rep4', 2815: 'mCherry+ mantle cell 1 hpCu rep1', 2816: 'mCherry+ mantle cell 1 hpCu rep2', 2817: 'mCherry+ mantle cell 1 hpCu rep3', 2818: 'mCherry+ mantle cell 1 hpCu rep4', 2819: 'mCherry+ mantle cell 3 hpCu rep3', 2820: 'mCherry+ mantle cell 3 hpCu rep4', 2821: 'mCherry+ mantle cell 5 hpCu rep3', 2822: 'mCherry+ mantle cell 5 hpCu rep4', 2834: 'Kidney marrow_CREB-zebrafish_1', 2835: 'Kidney marrow_CREB-zebrafish_2', 2836: 'Kidney marrow_CREB-zebrafish_3', 2837: 'Kidney marrow_CREB-zebrafish_4', 2838: 'Kidney marrow_CREB-zebrafish_5', 2841: '12hpi_Zebrafish_Retina_RNA-seq', 2856: 'Treated biological replicate 1', 2857: 'Treated biological replicate 2', 2858: 'Treated biological replicate 3', 2864: 'mCherry+ mantle cell 11 hpCu rep1', 2865: 'mCherry+ mantle cell 11 hpCu rep2', 2866: 'mCherry+ mantle cell 11 hpCu rep3', 2867: 'mCherry+ mantle cell 11 hpCu rep4', 2868: 'brain172 36m 3.75nM rotenone 3w rep5', 2869: 'brain168 36m 3.75nM rotenone 3w rep1', 2870: 'brain206 36m 3.75nM rotenone 8w rep4', 2871: 'Gata5/6 morphant, 6-somites, rep 1', 2872: 'brain207 36m 3.75nM rotenone 8w rep5', 2873: 'Atg7 and Bdh2 dual morphant, rep 1', 2874: 'Atg7 and Bdh2 dual morphant, rep 2', 2875: 'Atg7 and Bdh2 dual morphant, rep 3', 2880: 'Wild-type_Mm-infected_rep1_10747', 2881: 'Control biological replicate 2', 2882: 'Wild-type_Mm-infected_rep2_10748', 2884: 'Wild-type_Mm-infected_rep3_10749', 2885: 'liver170 36m 3.75nM rotenone 3w rep2', 2886: 'liver203 36m 3.75nM rotenone 8w rep1', 2887: 'liver171 36m 3.75nM rotenone 3w rep3', 2888: 'liver204 36m 3.75nM rotenone 8w rep2', 2889: 'liver172 36m 3.75nM rotenone 3w rep4', 2890: 'liver205 36m 3.75nM rotenone 8w rep3', 2891: 'liver168 36m 3.75nM rotenone 3w rep1', 2892: 'liver206 36m 3.75nM rotenone 8w rep4', 2894: 'liver207 36m 3.75nM rotenone 8w rep5', 2896: 'liver208 36m 3.75nM rotenone 8w rep6', 2899: 'eif3ha morphant, polysomal mRNA', 2905: 'embryo under C1, biological rep1', 2906: 'embryo under C1, biological rep2', 2907: 'embryo under C3, biological rep1', 2908: 'embryo under C3, biological rep2', 2909: 'embryo under C3, biological rep3', 2910: 'MiniCoopR;mitf:EGFP tumor input', 2911: 'ZMP_phenotype_255_phenotypic_1', 2912: 'ZMP_phenotype_255_phenotypic_2', 2913: 'ZMP_phenotype_255_phenotypic_3', 2914: 'ZMP_phenotype_255_phenotypic_4', 2915: 'ZMP_phenotype_255_phenotypic_5', 2916: 'marsanne, 48 hpf, biological rep1', 2917: 'marsanne, 48 hpf, biological rep2', 2918: 'marsanne, 48 hpf, biological rep3', 2919: 'pde6c mutant retina sample 2 (PR2)', 2921: 'pde6c mutant retina sample 3 (PR3)', 2930: 'Mau tVE1/tVE1 skin transcriptome', 2931: 'Zebrafish, adult, xanthophores', 2943: 'Generic sample from Danio rerio', 2944: 'Activated microglia 24h (Sample 3)', 2945: 'Danio_rerio_Larvae_100gMCLR_rep1', 2946: 'Danio_rerio_Larvae_100gMCLR_rep2', 2947: 'Danio_rerio_Larvae_100gMCLR_rep3', 2948: 'Activated microglia 24h (Sample 7)', 2950: 'Non-fluorescent untreated rep1', 2951: 'Non-fluorescent untreated rep2', 2952: '4dpi_C_Zebrafish_Retina_RNA-seq', 2953: 'Control embryo, biological rep2', 2954: 'Control embryo, biological rep3', 2955: 'Control embryo, biological rep4', 2956: 'Brain from Gaighatta Female rep 1', 2957: 'Brain from Gaighatta Female rep 2', 2959: 'ZMP_phenotype_255_phenotypic_10', 2960: 'ZMP_phenotype_255_phenotypic_11', 2961: 'ZMP_phenotype_255_phenotypic_12', 2983: 'Embryo_WT_24hpf_biological rep 1', 2984: 'Embryo_WT_24hpf_biological rep 2', 2985: 'Embryo_WT_24hpf_biological rep 3', 2986: 'Embryo_WT_24hpf_biological rep 4', 2989: 'Embryo_WT_48hpf_biological rep 1', 2990: 'wild-type, 48 hpf, biological rep1', 2991: 'Embryo_WT_48hpf_biological rep 3', 2992: 'Embryo_WT_48hpf_biological rep 4', 2993: 'Danio_rerio_Larvae_1000gMCLR_rep1', 2994: 'Danio_rerio_Larvae_1000gMCLR_rep2', 2995: 'Danio_rerio_Larvae_1000gMCLR_rep3', 3002: 'Sox2 injections WT CHX replicate 1', 3003: 'Sox2 injections WT CHX replicate 2', 3005: 'Zebrafish Heart array hypoxia Y1', 3006: 'Zebrafish Heart array hypoxia Y2', 3007: 'Zebrafish Heart array hypoxia Y3', 3008: 'Zebrafish Heart array hypoxia Y4', 3009: 'Zebrafish Heart array hypoxia Y5', 3012: 'S. epi mcherry O-47 5 DPI, biol. repl. 1', 3013: 'S. epi mcherry O-47 5 DPI, biol. repl. 2', 3014: 'S. epi mcherry O-47 5 DPI, biol. repl. 3', 3015: 'S. epi mcherry O-47 5 DPI, biol. repl. 4', 3039: 'ptpn6 morphant_uninfected_rep4', 10194: 'Tg(hsp:70:DeltaTcF-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep2', 3044: 'Lithium carbonate, 1.1 mM. sample 102', 3047: 'Lithium carbonate, 1.1 mM. sample 105', 3049: 'ZMP_phenotype_240_1_phenotypic_1', 3050: 'standard control_infected_rep1', 3051: 'standard control_infected_rep2', 3052: 'standard control_infected_rep3', 3053: 'standard control_infected_rep4', 3054: 'MZspg 60% epiboly stage replicate1', 3055: 'MZspg 60% epiboly stage replicate2', 3056: 'ZMP_phenotype_240_1_phenotypic_8', 3057: 'PostZGA_Mat-Null_6hpf_RNA-Seq_Rep1', 3058: 'PostZGA_Mat-Null_6hpf_RNA-Seq_Rep2', 3059: 'TCDD exposed male, biological rep5', 3060: 'PostZGA_Pat-Null_6hpf_RNA-Seq_Rep1', 3061: 'PostZGA_Pat-Null_6hpf_RNA-Seq_Rep2', 3066: 'uninfected miR-146 knockdown_rep1', 3067: 'uninfected miR-146 knockdown_rep2', 3068: 'standard control_infected (rep1)', 3075: 'DMSO exposed male, biological rep1', 3076: 'DMSO exposed male, biological rep2', 3077: 'DMSO exposed male, biological rep3', 3078: 'DMSO exposed male, biological rep4', 3079: 'DMSO exposed male, biological rep5', 3080: 'mutant 5 hr treatment replicate 3', 3083: 'ZebrafishEmbyos_Control~72_rep1', 3084: 'ZebrafishEmbyos_Control~72_rep2', 3085: 'ZebrafishEmbyos_Control~72_rep3', 3089: 'ZebrafishEmbyos_Control~96_rep1', 3090: 'ZebrafishEmbyos_Control~96_rep2', 3094: 'Mau tVBU1/tVBU1 skin transcriptome', 3097: 'ZMP_phenotype_240_1_phenotypic_10', 3098: 'ZMP_phenotype_214_1_phenotypic_10', 3099: 'ZMP_phenotype_214_1_phenotypic_11', 3100: 'ZMP_phenotype_214_1_phenotypic_12', 3101: 'Zebrafish Heart array normoxia N1', 3102: 'Zebrafish Heart array normoxia N2', 3103: 'Zebrafish Heart array normoxia N3', 3104: 'Zebrafish Heart array normoxia N4', 3105: 'Zebrafish Heart array normoxia N5', 3113: 'Untreated zebrafish embryo 5hpf-1', 3137: 'Multiciliated cell_control_rep1', 3138: 'Multiciliated cell_control_rep2', 3141: 'Anterior pectoral fin replicate 1', 3142: 'Anterior pectoral fin replicate 2', 3147: 'Pou5f1 injections MZ CHX replicate 2', 3148: 'Pou5f1 injections MZ CHX replicate 3', 3159: 'Untreated zebrafish embryo 21hpf-1', 3160: 'brain, adrenal medulla: 4-WT36_e1_le1', 3161: 'brain, adrenal medulla: 5-WT36_e1_le1', 3162: 'brain, adrenal medulla: 6-WT36_e1_le1', 3163: 'Mller glia at 0 hpl, biological rep1', 3164: 'Mller glia at 0 hpl, biological rep2', 3165: 'Mller glia at 0 hpl, biological rep3', 3171: 'Mller glia at 8 hpl, biological rep1', 3172: 'Mller glia at 8 hpl, biological rep2', 3173: 'Mller glia at 8 hpl, biological rep3', 3176: 'MO control zebrafish embryo 21hpf-1', 3177: 'MO control zebrafish embryo 21hpf-2', 3183: 'Salmonella-infected control_rep1', 3184: 'Salmonella-infected control_rep2', 3197: 'Zebrafish Embyro_16cell stage_Rep1', 3206: 'stac embryos 30hpf, biological rep1', 3207: 'stac embryos 30hpf, biological rep2', 3209: 'stac embryos 24hpf, biological rep1', 3210: 'stac embryos 24hpf, biological rep2', 3217: 'Mller glia at 24 hpl, biological rep1', 3218: 'Mller glia at 16 hpl, biological rep1', 3219: 'Mller glia at 24 hpl, biological rep3', 3220: 'Mller glia at 36 hpl, biological rep1', 3221: 'Mller glia at 36 hpl, biological rep2', 3222: 'Mller glia at 36 hpl, biological rep3', 10095: 'Tg(hsp701;dnfgfr1-EGFP) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep1', 3228: 'embryo as control, biological rep1', 3229: 'embryo as control, biological rep2', 3230: 'Zebrafish Embryo_16 cell stage_Rep2', 1904: 'ZMP_phenotype_198_39r', 3241: 'GFP-neg Control surrounding cells 1', 3242: 'GFP-neg Control surrounding cells 2', 3243: 'GFP-neg Control surrounding cells 3', 3249: '3 hour RA treatment, biological rep1', 3250: '3 hour RA treatment, biological rep2', 3251: '3 hour RA treatment, biological rep3', 3261: 'brain, adrenal medulla: 1-WT36h_e1_le1', 3272: 'Posterior pectoral fin replicate 1', 3273: 'Posterior pectoral fin replicate 2', 3277: 'standard control_uninfected_rep1', 3278: 'standard control_uninfected_rep2', 3279: 'standard control_uninfected_rep3', 3280: 'standard control_uninfected_rep4', 3281: 'Danio rerio Tuebingen wildtype_1c-2', 3284: 'Danio rerio Tuebingen wildtype_4d-1', 3285: 'Danio rerio Tuebingen wildtype_5d-1', 3286: 'Danio rerio Tuebingen wildtype_5d-2', 3287: 'Kidney marrow_Control-zebrafish_1', 3288: 'Kidney marrow_Control-zebrafish_2', 3289: 'Kidney marrow_Control-zebrafish_3', 3290: 'Kidney marrow_Control-zebrafish_4', 3291: 'Kidney marrow_Control-zebrafish_5', 3292: 'Danio rerio Tuebingen wildtype_8h-1', 3293: 'Danio rerio Tuebingen wildtype_8h-2', 3294: 'Danio rerio Tuebingen wildtype_9h-2', 3295: 'standard control_uninfected (rep1)', 3297: 'Metazome_ZF_timecourse_sample_0100', 3298: 'Metazome_ZF_timecourse_sample_0101', 3299: 'Metazome_ZF_timecourse_sample_0102', 3300: 'Metazome_ZF_timecourse_sample_0103', 3301: 'Metazome_ZF_timecourse_sample_0104', 3302: 'Metazome_ZF_timecourse_sample_0105', 3303: 'Metazome_ZF_timecourse_sample_0106', 3304: 'Metazome_ZF_timecourse_sample_0080', 3305: 'Metazome_ZF_timecourse_sample_0081', 3306: 'Metazome_ZF_timecourse_sample_0082', 3307: 'Metazome_ZF_timecourse_sample_0083', 3308: 'Metazome_ZF_timecourse_sample_0057', 3309: 'Metazome_ZF_timecourse_sample_0085', 3310: 'Metazome_ZF_timecourse_sample_0077', 3311: 'Metazome_ZF_timecourse_sample_0087', 3312: 'Metazome_ZF_timecourse_sample_0088', 3313: 'Metazome_ZF_timecourse_sample_0089', 3314: 'Metazome_ZF_timecourse_sample_0099', 3331: 'Danio rerio Tuebingen wildtype_30d-1', 3332: 'Danio rerio Tuebingen wildtype_30d-2', 3333: 'Danio rerio Tuebingen wildtype_14d-1', 3334: 'Danio rerio Tuebingen wildtype_10h-2', 3337: 'ZMP_phenotype_255_non_phenotypic_1', 3338: 'ZMP_phenotype_255_non_phenotypic_2', 3339: 'ZMP_phenotype_255_non_phenotypic_3', 3340: 'ZMP_phenotype_255_non_phenotypic_4', 3341: 'ZMP_phenotype_255_non_phenotypic_5', 3342: 'ZMP_phenotype_255_non_phenotypic_6', 3343: 'ZMP_phenotype_255_non_phenotypic_7', 3344: 'ZMP_phenotype_255_non_phenotypic_8', 3345: 'ZMP_phenotype_255_non_phenotypic_9', 3346: '1.5 hour RA treatment, biological rep1', 3347: '1.5 hour RA treatment, biological rep2', 3348: '1.5 hour RA treatment, biological rep3', 3349: '1.5 hour RA treatment, biological rep4', 3363: 'zebrafish 5 days old larvae total RNA', 3369: 'Uninjured_Zebrafish_Retina_RNA-seq', 3374: 'MZ_124_GFP_neg1, biological replicate 1', 3376: 'MZ_124_GFP_neg2, biological replicate 2', 3378: 'MZ_124_GFP_neg3, biological replicate 3', 3383: 'M. marinum E11 5DPI [IL-13-08_Anita_26_GTGAAA]', 3384: 'Danio rerio Tuebingen wildtype_14d_2', 3385: 'ZMP_phenotype_255_non_phenotypic_10', 3386: 'ZMP_phenotype_255_non_phenotypic_11', 3387: 'ZMP_phenotype_255_non_phenotypic_12', 3388: 'MZdicer 6h miR-430_Ago_hairpin_PS_bond', 3392: 'zebrafish mpeg1:mCherry +, 72 hpf [EH_R]', 3398: 'MZ_124_GFP_pos1, biological replicate 1', 3399: '3 hour DAPT treatment, biological rep1', 3400: '3 hour DAPT treatment, biological rep2', 3401: 'Tg(HSP:EWS-FLI1) embryos biological rep3', 3402: 'MZ_124_GFP_pos3, biological replicate 3', 3405: 'Region 1, control embryos replicate 1', 3406: '2dpa con 1 (adult and larval fin study)', 3407: 'Region 2, control embryos replicate 2', 3408: 'Region 2, control embryos replicate 3', 3409: '3dpa con 3 (adult and larval fin study)', 3434: 'Non-injected 5 DPI [IL-13-08_Anita_6_GATCAG]', 3435: 'Danio rerio Tuebingen wildtype_11.7h-1', 3436: 'Danio rerio Tuebingen wildtype_11.7h-2', 3440: 'zebrafish_48hpf_control_replicate1', 3441: 'zebrafish_48hpf_control_replicate2', 3442: 'wt_124_GFP_neg1, biological replicate 1', 3443: 'wt_206_GFP_neg1, biological replicate 1', 3444: 'wt_124_GFP_neg2, biological replicate 2', 3445: 'wt_206_GFP_neg2, biological replicate 2', 3446: 'Non-injected 5 DPI [IL-13-08_Anita_5_ACTTGA]', 3447: 'zebrafish_48hpf_miR-126 MO-1_replicate1', 3448: 'zebrafish_48hpf_miR-126 MO-2_replicate1', 3449: 'zebrafish_48hpf_miR-126 MO-2_replicate2', 3450: 'zebrafish_48hpf_miR-126 MO-2_replicate3', 3451: 'zebrafish_48hpf_miR-126 MO-2_replicate4', 3466: 'wt_124_GFP_pos1, biological replicate 1', 3467: 'wt_206_GFP_pos1, biological replicate 1', 3468: 'wt_124_GFP_pos2, biological replicate 2', 3469: 'wt_206_GFP_pos2, biological replicate 2', 3470: 'wt_124_GFP_pos3, biological replicate 3', 3471: 'wt_206_GFP_pos3, biological replicate 3', 3475: 'ZMP_phenotype_240_1_non_phenotypic_1', 3476: 'ZMP_phenotype_214_1_non_phenotypic_1', 3477: 'ZMP_phenotype_214_1_non_phenotypic_2', 3478: 'ZMP_phenotype_214_1_non_phenotypic_3', 3479: 'ZMP_phenotype_214_1_non_phenotypic_4', 3480: 'ZMP_phenotype_214_1_non_phenotypic_5', 3481: 'ZMP_phenotype_214_1_non_phenotypic_6', 3482: 'ZMP_phenotype_214_1_non_phenotypic_7', 3483: 'ZMP_phenotype_214_1_non_phenotypic_8', 3484: 'ZMP_phenotype_214_1_non_phenotypic_9', 10138: 'Tg(hsp701;dnfgfr1-EGFP) embryos heat-shocked for 30 mins and posterior PSM dissected after 30 mins, biological rep1', 3486: '1 dpa con b (adult and larval fin study)', 3487: '3 dpa con a (adult and larval fin study)', 3488: '3 dpa con b (adult and larval fin study)', 3489: '1 dpa con e (adult and larval fin study)', 3490: '5 dpa con b (adult and larval fin study)', 3491: '5 dpa con c (adult and larval fin study)', 3492: 'GFP-neg surrounding cells 1 Technical 1', 3493: 'atg5 Mopholino biological replicate 1', 3494: 'brain, adrenal medulla: 1-Foggy36_e1_le1', 3495: 'brain, adrenal medulla: 2-Foggy36_e1_le1', 3496: '1.5 hour DAPT treatment, biological rep1', 3497: '1.5 hour DAPT treatment, biological rep2', 3498: '1.5 hour DAPT treatment, biological rep3', 3499: 'brain, adrenal medulla: 6-Foggy36_e1_le1', 3503: 'Brain_attentive_to_fight_30min_rep1', 3504: 'Brain_attentive_to_fight_30min_rep2', 3505: 'Embryos from eggs treated with DDE (1uM)', 3523: 'ZMP_phenotype_240_1_non_phenotypic_10', 3524: 'ZMP_phenotype_214_1_non_phenotypic_10', 3525: 'ZMP_phenotype_214_1_non_phenotypic_11', 3526: 'ZMP_phenotype_214_1_non_phenotypic_12', 3529: 'Embryo_Morpholino.Injected_Infected', 3534: 'becn Mopholino biological replicate 3', 6053: 'embryo injected with anti-mir-34LNA, kept for 24hpf, biological rep2', 3552: '"true" control adult zebrafish retina', 3553: '1-naphtylisothiocyanate, 50 M. sample 100', 3556: 'Control larve at 10 dpf, biological rep1', 3557: 'Control larve at 10 dpf, biological rep2', 3558: 'Control larve at 10 dpf, biological rep3', 3559: 'young adult_24hr BTF mix exposure_rep1', 3562: '1-naphtylisothiocyanate, 50 M. sample 136', 3569: '1-naphtylisothiocyanate, 50 M. sample 188', 3570: 'Adult irradiated, low dose, replicate 1', 3571: 'Adult irradiated, low dose, replicate 2', 3572: 'Adult irradiated, low dose, replicate 3', 3581: 'becn1 Mopholino biological replicate 1', 3582: 'becn1 Mopholino biological replicate 2', 3589: 'Spt5 knockdown zebrafish embryo 21hpf-1', 3590: 'Spt5 knockdown zebrafish embryo 21hpf-2', 3591: 'heart ventricles at T0, biological rep3', 3594: 'embryo as control mRNA, biological rep1', 3595: 'embryo as control mRNA, biological rep2', 3596: 'embryo as control mRNA, biological rep3', 3601: 'Danio rerio Shield Stage Embryos RNA-Seq', 3603: 'Zebrafish_MZ Dicer_miR-430 injected_Rep1', 3604: 'Zebrafish_MZ Dicer_miR-430 injected_Rep2', 3605: 'Zebrafish_MZ Dicer_miR-430 injected_Rep3', 3608: '1-naphtylisothiocyanate, 5.5 M. sample 050', 3612: '1-naphtylisothiocyanate, 5.5 M. sample 054', 3615: 'Tissue spatial point 1, biological rep1', 3616: 'Tissue spatial point 2, biological rep1', 3617: 'Tissue spatial point 2, biological rep2', 3618: 'Tissue spatial point 4, biological rep1', 3619: '142ab-/- myelomonocytes, biological rep 1', 3620: '142ab-/- myelomonocytes, biological rep 2', 3621: 'Tissue spatial point 6, biological rep2', 3634: 'Embryos from eggs treated with 11-KT (1 uM)', 10163: 'Wild type retina with retinal pigment epithelium attached, 52hpf, pool of 10 tiss, bio rep 2 WRR_52hpf_rep2 (WRR52_3)', 3644: 'Embryos from eggs treated with DMSO (0.005%)', 3648: 'Adult irradiated, high dose, replicate 1', 3649: 'Adult irradiated, high dose, replicate 2', 3650: 'Adult irradiated, high dose, replicate 3', 1974: '6 hpi uninfected_rep4', 3655: '17alpha-ethynylestradiol, 3.5 M. sample 036', 3656: 'control embryo: biological replicate 1', 3657: 'control embryo: biological replicate 2', 3658: 'control embryo: biological replicate 3', 3660: '17alpha-ethynylestradiol, 3.5 M. sample 068', 3662: '1-naphtylisothiocyanate, 16.7 M. sample 016', 3664: '1-naphtylisothiocyanate, 16.7 M. sample 126', 3669: '1-naphtylisothiocyanate, 16.7 M. sample 149', 3684: 'young adult_24hr Benzene exposure_rep1', 3686: 'Embryo irradiated, low dose, replicate 1', 3687: 'Embryo irradiated, low dose, replicate 2', 3688: 'Embryo irradiated, low dose, replicate 3', 3693: 'wild type embryos 30hpf, biological rep1', 3694: 'wild type embryos 30hpf, biological rep2', 3696: 'wild type embryos 24hpf, biological rep1', 3697: 'wild type embryos 24hpf, biological rep2', 3699: '17alpha-ethynylestradiol, 1.16 M. sample 032', 3700: '17alpha-ethynylestradiol, 0.38 M. sample 021', 3702: '17alpha-ethynylestradiol, 0.38 M. sample 023', 3703: '17alpha-ethynylestradiol, 1.16 M. sample 063', 3704: 'Zebrafish wt embryo_ TB_biological rep1', 3705: 'Zebrafish wt embryo_ TB_biological rep2', 3706: 'Region 1, transgenic embryos replicate 1', 3707: 'Region 2, transgenic embryos replicate 1', 3708: 'Region 2, transgenic embryos replicate 2', 3709: 'larvae unirradiated_CK, biological rep1', 3712: '17alpha-ethynylestradiol, 0.38 M. sample 159', 3713: '2dpf unamputated caudal fin; replicate 2', 3714: '2dpf unamputated caudal fin; replicate 3', 3721: 'infected embryo: biological replicate 1', 3722: 'infected embryo: biological replicate 2', 3723: 'infected embryo: biological replicate 3', 3742: 'embryo of cMO injection, biological rep 1', 3743: 'embryo of cMO injection, biological rep 2', 3744: 'embryo of cMO injection, biological rep 3', 3748: 'Zebrafish QKD embryo_ 30%E_biological rep1', 3759: 'Zebrafish wt embryo_ 30%E_biological rep1', 3760: 'Zebrafish wt embryo_ 30%E_biological rep2', 3764: 'Embryo irradiated, high dose, replicate 1', 3765: 'Embryo irradiated, high dose, replicate 2', 3766: 'Embryo irradiated, high dose, replicate 3', 3767: 'Zebrafish_Wild Type_miR-430 injected_Rep1', 3768: 'Zebrafish_Wild Type_miR-430 injected_Rep2', 3769: 'Zebrafish_Wild Type_miR-430 injected_Rep3', 3775: 'embryo treated with DMSO, biological rep1', 3776: 'embryo treated with DMSO, biological rep2', 3777: 'embryo treated with DMSO, biological rep3', 3778: 'embryo treated with DMSO, biological rep4', 3781: 'Zebrafish QKD embryo_ 30%E_biological rep2', 3788: 'zebrafish neurons regenerated, bio rep 1', 3789: 'Zebrafish QKD embryo_ 75%E_biological rep1', 3790: 'Zebrafish QKD embryo_ 75%E_biological rep2', 3798: 'embryo of prmt6 MO normal subtype at 6 hpf', 10193: 'Tg(hsp:70:DeltaTcF-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep1', 3817: 'zebrafish-35hpf-cd41-sorted-GFP-neg-3_repl-1', 3821: 'zebrafish-35hpf-cd41-sorted-GFP-neg-6_repl-2', 3824: 'zebrafish-35hpf-cd41-sorted-GFP-neg-8_repl-3', 3826: 'zebrafish-35hpf-cd41-sorted-GFP-neg-9_repl-4', 10195: 'Tg(hsp:70:DeltaTcF-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep3', 3828: 'control embryos at 24hpf, biological rep 1', 3829: 'control embryos at 24hpf, biological rep 2', 3830: 'control embryos at 24hpf, biological rep 3', 3831: 'control embryos at 24hpf, biological rep 4', 3834: 'control embryos at 48hpf, biological rep 1', 3836: 'control embryos at 48hpf, biological rep 3', 3837: 'control embryos at 48hpf, biological rep 4', 3839: 'zebrafish-35hpf-cd41-sorted-GFP-pos+3_repl-1', 3843: 'zebrafish-35hpf-cd41-sorted-GFP-pos+6_repl-2', 3846: 'zebrafish-35hpf-cd41-sorted-GFP-pos+8_repl-3', 3848: 'zebrafish-35hpf-cd41-sorted-GFP-pos+9_repl-4', 3863: 'Control Mopholino biological replicate 3', 9949: 'Tg(hsp:70:wnt8a-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep2', 3880: 'Embryo_Morpholino.Injected_Not.Infected', 3887: 'Embryo_Rad21 mutant_24hpf_biological rep 1', 3888: 'Embryo_Rad21 mutant_24hpf_biological rep 2', 3889: 'Embryo_Rad21 mutant_24hpf_biological rep 3', 3890: 'Embryo_Rad21 mutant_24hpf_biological rep 4', 3893: 'Embryo_Rad21 mutant_48hpf_biological rep 1', 3894: 'Embryo_Rad21 mutant_48hpf_biological rep 2', 3895: 'Embryo_Rad21 mutant_48hpf_biological rep 3', 3896: 'Embryo_Rad21 mutant_48hpf_biological rep 4', 3897: 'D_rerio_dissected_M_marinum_granuloma5', 3898: 'Multiciliated cell_miR-34B morphants_rep1', 3899: 'Multiciliated cell_miR-34B morphants_rep2', 3913: 'Embryos uninjected biological repl. 1 (50uM)', 3914: 'Embryos uninjected biological repl. 1 (15uM)', 3915: 'Embryos uninjected biological repl. 2 (15uM)', 3916: 'Tumor #1, GFP-negative/mCherry+ sorted cells', 3917: 'Tumor #2, GFP+/mCherry-negative sorted cells', 3929: 'embryo treated with SiNPs, biological rep1', 3930: 'embryo treated with SiNPs, biological rep2', 3931: 'embryo treated with SiNPs, biological rep3', 9951: 'Tg(hsp:70:wnt8a-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep4', 3951: 'Ribosome protected fragments MZdicer 2hpf', 3953: 'Ribosome protected fragments MZdicer 4hpf', 3955: 'Ribosome protected fragments MZdicer 6hpf', 3964: 'Bdh2 morphant expressing ectopic Bdh2, rep 1', 3976: 'Control Morpholino biological replicate 2', 3977: 'Uninjected control biological replicate 1', 3978: 'Uninjected control biological replicate 2', 3979: 'Uninjected control biological replicate 3', 3991: 'shield stage, sectioned from left to right', 3992: '1 male Danio rerio (strain TueAB), 5m, skin, mRNA', 4013: 'brain, adrenal medulla: 1-Foggy_12_som_e1_le1', 4014: 'brain, adrenal medulla: 2-Foggy_12_som_e1_le1', 4015: 'brain, adrenal medulla: 3-Foggy_12_som_e1_le1', 4023: 'embryo as control microRNA, biological rep1', 4024: 'embryo as control microRNA, biological rep2', 4025: 'embryo as control microRNA, biological rep3', 4030: 'wild type zebrafish liver_biological rep1', 4031: 'wild type zebrafish liver_biological rep2', 4032: 'wild type zebrafish liver_biological rep3', 4037: 'embryo treated with 0.33uM RA, biological rep1', 4038: 'embryo treated with 0.33uM RA, biological rep2', 4039: 'embryo treated with 0.33uM RA, biological rep3', 4040: 'embryo treated with 0.33uM RA, biological rep4', 4046: 'Ribosome protected fragments MZdicer 2hpf-2', 4047: 'Danio_rerio_Larvae_MicrocystisAlgae_rep2', 4048: 'Ribosome protected fragments MZdicer 4hpf-2', 4050: 'Ribosome protected fragments MZdicer 6hpf-2', 4063: 'ZF4 cells with Edwardsiella tarda infection', 4064: 'wild-type myelomonocytes, biological rep 2', 4068: 'Embryo exposed to Morphine, biological rep1', 4069: 'Embryo exposed to Morphine, biological rep2', 4070: 'Embryo exposed to Morphine, biological rep3', 4071: 'Embryo exposed to Morphine, biological rep4', 4072: 'Embryo exposed to Morphine, biological rep5', 4073: 'Embryo exposed to Morphine, biological rep6', 10240: 'Wild type retina with retinal pigment epithelium attached, 52hpf, pool of 10 tiss, bio rep 1 1 WRR_52hpf_rep1 (WRR52_1)', 683: 'Mutant2', 4101: '1 male Danio rerio (strain TueAB), 3.5y, skin, mRNA', 4103: 'Zebrafish_mutant_sk8_24hpf, biological rep1', 4104: 'Zebrafish_mutant_sk8_24hpf, biological rep2', 4105: 'Zebrafish_mutant_sk8_24hpf, biological rep3', 4126: 'egy wt sibling embryos at d3, biological rep1', 4127: 'egy wt sibling embryos at d3, biological rep2', 4128: 'egy wt sibling embryos at d5, biological rep1', 4129: 'egy wt sibling embryos at d5, biological rep2', 4130: 'zebrafish neurons control, biological rep 1', 4131: 'zebrafish neurons control, biological rep 2', 4132: 'zebrafish neurons control, biological rep 3', 4140: 'embryo treated with PM2.5 mRNA, biological rep1', 4141: 'embryo treated with PM2.5 mRNA, biological rep2', 4142: 'embryo treated with PM2.5 mRNA, biological rep3', 4144: '10 somite stage, sectioned from right to left', 4147: 'Ribosome protected fragments Wild type 2hpf', 4149: 'Ribosome protected fragments Wild type 4hpf', 4151: 'Ribosome protected fragments Wild type 6hpf', 4159: 'zebrafish embryo at 36 hpf EET, biological rep1', 4160: 'zebrafish embryo at 36 hpf EET, biological rep2', 4161: 'zebrafish embryo at 36 hpf EET, biological rep3', 4164: 'zebrafish neurons non-regenerated, bio rep 1', 4165: 'zebrafish neurons non-regenerated, bio rep 2', 4166: 'zebrafish neurons non-regenerated, bio rep 3', 4171: 'M. marinum E11 5DPI [IL-13-08_Anita_27_ATCACG_L008_R1_001]', 4175: 'Embryos from eggs treated with dieldrin (1 uM)', 4177: 'zCdx1b transgenic zebrafish, biological rep1', 4178: 'zCdx1b transgenic zebrafish, biological rep2', 4179: 'zCdx1b transgenic zebrafish, biological rep3', 4188: 'M. marinum E11 5DPI [IL-13-08_Anita_37_ACTGAT_L007_R1_001]', 4190: 'M. marinum E11 5DPI [IL-13-08_Anita_39_CGATGT_L001_R1_001]', 4199: 'M. marinum E11 5DPI [IL-13-08_Anita_38_ATTCCT_L002_R1_001]', 4209: 'young adult_24hr Formaldehyde exposure_rep1', 4227: 'Mtz treatment 1 larve at 10 dpf, biological rep1', 4228: 'Mtz treatment 1 larve at 10 dpf, biological rep2', 4229: 'Mtz treatment 1 larve at 10 dpf, biological rep3', 4233: 'egy mut sibling embryos at d3, biological rep1', 4234: 'egy mut sibling embryos at d3, biological rep2', 4235: 'egy mut sibling embryos at d5, biological rep1', 4236: 'egy mut sibling embryos at d5, biological rep2', 4237: 'egy mut sibling embryos at d5, biological rep3', 4242: 'Ribosome protected fragments Wild type 2hpf-2', 4243: 'brain, adrenal medulla: 2-Control_12_som_e1_le1', 4244: 'brain, adrenal medulla: 3-Control_12_som_e1_le1', 4245: 'zebrafish embryo at 36 hpf DMSO, biological rep2', 4246: 'zebrafish embryo at 36 hpf DMSO, biological rep3', 4252: 'GFP+ Zebrafish Hair Cells Biological Replicate 1', 4253: 'GFP+ Zebrafish Hair Cells Biological Replicate 2', 4254: 'GFP+ Zebrafish Hair Cells Biological Replicate 3', 4268: 'embryo treated with 1uM AGN193019, biological rep1', 4269: 'embryo treated with 1uM AGN193019, biological rep2', 4270: 'embryo treated with 1uM AGN193019, biological rep3', 4271: 'embryo treated with 1uM AGN193019, biological rep4', 4281: 'Non-irradiate control, biological replicate 1', 4282: 'Non-irradiate control, biological replicate 2', 4283: 'Non-irradiate control, biological replicate 3', 4298: 'Zebrafish 48hpf heart mRNA sequencing - control', 4314: 'GFP+ Hair Cells Biological Replicate 1 Technical 1', 4315: 'GFP+ Hair Cells Biological Replicate 2 Technical 1', 4316: 'GFP+ Hair Cells Biological Replicate 2 Technical 2', 4317: 'embryo treated with 10uM AGN193019, biological rep2', 4318: 'embryo treated with 10uM AGN193019, biological rep3', 4319: 'embryo treated with 10uM AGN193019, biological rep4', 4330: 'Embryo_Control morpholino.Injected_Infected', 4343: 'larvae irradiated with 12Gy_IR1, biological rep1', 4347: 'larvae irradiated with 15Gy_IR2, biological rep1', 4357: 'ONX eye at 4 days post-ONX, biological replicate 1', 4358: 'ONX eye at 4 days post-ONX, biological replicate 2', 4379: 'Control adult zebrafish retina, 2d post-lesion', 4380: 'Control adult zebrafish retina, 3d post-lesion', 4381: 'larvae irradiated with 15Gy_IR2, biological rep3', 4382: 'Control adult zebrafish retina, 5d post-lesion', 4384: 'Control adult zebrafish retina, 7d post-lesion', 4388: 'Total RNA from 3-dpf wildtype zebrafish embryos', 4399: 'embryo treated with SiNPs+B[a]P, biological rep1', 4400: 'embryo treated with SiNPs+B[a]P, biological rep2', 4401: 'embryo treated with SiNPs+B[a]P, biological rep3', 4404: 'ONX eye at 21 days post-ONX, biological replicate 1', 4405: 'ONX eye at 12 days post-ONX, biological replicate 2', 4407: 'ZF4 cells without Edwardsiella tarda infection', 4409: 'SHAM eye at 4 days post-ONX, biological replicate 1', 4410: 'SHAM eye at 4 days post-ONX, biological replicate 2', 4422: 'Wildtype: Pam3CSK4-injected ; Biological replica 1', 4423: 'Wildtype: Pam3CSK4-injected ; Biological replica 2', 4424: 'Wildtype: Pam3CSK4-injected ; Biological replica 3', 4430: 'Control adult zebrafish retina, 14d post-lesion', 4433: 'Unamputated wildtype adult zebrafish, sample 1', 4434: 'Unamputated wildtype adult zebrafish, sample 2', 4435: 'Unamputated wildtype adult zebrafish, sample 3', 4447: 'Control 5dpf zebrafish embryos replicate 1 run 1', 4448: 'Control 5dpf zebrafish embryos replicate 2 run 1', 4454: 'dusp2um287/um287;dusp6um286/um286 mutant replicate 1', 4455: 'dusp2um287/um287;dusp6um286/um286 mutant replicate 2', 4456: 'SHAM eye at 21 days post-ONX, biological replicate 1', 4457: 'SHAM eye at 21 days post-ONX, biological replicate 2', 4461: 'Lesioned adult zebrafish retina, 2d post-lesion', 4462: 'Lesioned adult zebrafish retina, 3d post-lesion', 4464: 'Lesioned adult zebrafish retina, 5d post-lesion', 4466: 'Lesioned adult zebrafish retina, 7d post-lesion', 4479: 'Embryos injected with 50uM coMO biological repl. 1', 4480: 'Embryos injected with 50uM coMO biological repl. 2', 4481: 'Embryos injected with 15uM coMO biological repl. 2', 4482: 'Brain_attentive_to_noninteracting_30min_rep3', 4496: 'Zebrafish NMLF at 11d after surgery, sham control 1', 4497: 'Zebrafish NMLF at 11d after surgery, sham control 2', 4498: 'Zebrafish NMLF at 11d after surgery, sham control 3', 4501: 'Zebrafish NMLF at 12h after surgery, sham control 1', 4502: 'Zebrafish NMLF at 12h after surgery, sham control 2', 4503: 'Zebrafish NMLF at 12h after surgery, sham control 3', 4506: 'Germ-free_6dpf_zebrafish_larvae_replicate3_8422', 4512: 'Lesioned adult zebrafish retina, 14d post-lesion', 4514: 'Germ-free_6dpf_zebrafish_larvae_replicate1_8297', 4516: 'Germ-free_6dpf_zebrafish_larvae_replicate2_8298', 4549: 'sections 97-108 for samples dr_15ss_TH and dr_15ss_HT', 4550: 'Model organism or animal sample from Danio rerio', 4569: 'embryo treated with PM2.5 microRNA, biological rep1', 4570: 'embryo treated with PM2.5 microRNA, biological rep2', 4571: 'embryo treated with PM2.5 microRNA, biological rep3', 4575: 'Esrp1 & 2 DKO 5dpf zebrafish embryos replicate 1 run 1', 4576: 'Esrp1 & 2 DKO 5dpf zebrafish embryos replicate 2 run 1', 4592: 'Unfed 6.5 dpf zebrafish larvae (low-fat cohort) rep1', 4593: 'esco2 MO injected embryos at 24hpf, biological rep 1', 4594: 'esco2 MO injected embryos at 24hpf, biological rep 2', 4595: 'esco2 MO injected embryos at 24hpf, biological rep 3', 4596: 'esco2 MO injected embryos at 24hpf, biological rep 4', 4599: 'esco2 MO injected embryos at 48hpf, biological rep 1', 4600: 'esco2 MO injected embryos at 48hpf, biological rep 2', 4601: 'esco2 MO injected embryos at 48hpf, biological rep 3', 4602: 'esco2 MO injected embryos at 48hpf, biological rep 4', 4650: 'Danio_rerio_Larvae_Control_fishwateronly_rep1', 4651: 'Danio_rerio_Larvae_Control_fishwateronly_rep2', 4652: 'Danio_rerio_Larvae_Control_fishwateronly_rep3', 4670: 'Unfed 6.5 dpf zebrafish larvae (high-fat cohort) rep1', 4671: 'Unfed 6.5 dpf zebrafish larvae (high-fat cohort) rep2', 4672: 'Unfed 6.5 dpf zebrafish larvae (high-fat cohort) rep3', 4679: 'embryo of prmt6 MO severe subtype, biological rep 1', 4680: 'embryo of prmt6 MO severe subtype, biological rep 2', 4681: 'embryo of prmt6 MO severe subtype, biological rep 3', 4695: 'Brain_inattentive_to_noninteracting_30min_rep1', 4696: 'Brain_inattentive_to_noninteracting_30min_rep2', 4697: 'Brain_inattentive_to_noninteracting_30min_rep3', 4718: 'Wildtype: Flagellin-injected ; Biological replica 1', 4719: 'Wildtype: Flagellin-injected ; Biological replica 2', 4720: 'Wildtype: Flagellin-injected ; Biological replica 3', 4750: 'Danio rerio injected with mespaa morpholino, 5.5hpf', 2158: 'control morphant, rep 1', 2159: 'control morphant, rep 2', 2160: 'control morphant, rep 3', 4770: 'Model organism or animal sample from Danio rerio CG2', 4774: 'shield stage, sectioned from dorsal to ventral end', 2161: '128-cell, polysome-bound', 4801: 'Danio_rerio_Larvae_Control_EthanolExposure_rep1', 4802: 'Danio_rerio_Larvae_Control_EthanolExposure_rep2', 4803: 'Danio_rerio_Larvae_Control_EthanolExposure_rep3', 4809: 'Fluorescence-activated_cell_sorted_macrophages1', 4810: 'Fluorescence-activated_cell_sorted_macrophages2', 4811: 'Fluorescence-activated_cell_sorted_macrophages3', 4812: 'Fluorescence-activated_cell_sorted_macrophages4', 4845: 'Zebrafish trancriptome for protegenomic analysis', 4846: 'Untreated six hour post fertilization embryo rep 1', 4847: 'Untreated six hour post fertilization embryo rep 2', 4856: 'shield stage, sectioned from vegetal to animal pole', 4871: 'RNA-seq from Fred Hutchinscon AB strain of Danio rerio', 4875: 'Dorsal parenchyma, no lesion, biological replicate 1', 4876: 'Dorsal parenchyma, no lesion, biological replicate 2', 4886: 'Tumor #1, GFP+/mCherry+, Double Positive (DP) sorted cells', 4887: 'Tumor #2, GFP+/mCherry+, Double Positive (DP) sorted cells', 4894: 'heart ventricles at T1d post-injury, biological rep1', 4895: 'heart ventricles at T1d post-injury, biological rep2', 4896: 'heart ventricles at T1d post-injury, biological rep3', 4897: 'heart ventricles at T3d post-injury, biological rep2', 4898: 'heart ventricles at T3d post-injury, biological rep3', 4900: 'heart ventricles at T7d post-injury, biological rep1', 4901: 'heart ventricles at T7d post-injury, biological rep2', 4902: 'heart ventricles at T7d post-injury, biological rep3', 4903: 'heart ventricles at T4h post-injury, biological rep3', 4914: 'Embryos injected with 50uM ERbeta2 MO biological repl. 1', 4915: 'Embryos injected with 15uM ERbeta2 MO biological repl. 1', 4916: 'Embryos injected with 15uM ERbeta2 MO biological repl. 2', 4927: '10 somite stage, sectioned from ventral to dorsal end', 4932: '15 somite stage, sectioned from ventral to dorsal end', 4933: 'Untreated nine hour post fertilization embryo rep 2', 4944: 'zebrafish larvae exposed to cold stress, replicate 1', 4945: 'zebrafish larvae exposed to cold stress, replicate 2', 4946: 'heart ventricles at T14d post-injury, biological rep1', 4947: 'heart ventricles at T14d post-injury, biological rep2', 4948: 'heart ventricles at T14d post-injury, biological rep3', 4950: 'heart ventricles at T90d post-injury, biological rep1', 4951: 'heart ventricles at T90d post-injury, biological rep2', 4952: 'heart ventricles at T90d post-injury, biological rep3', 4964: 'Male offspring (F1) of TCDD exposed fish, biological rep1', 4965: 'Male offspring (F1) of TCDD exposed fish, biological rep2', 4966: 'Male offspring (F1) of TCDD exposed fish, biological rep3', 4967: 'Male offspring (F1) of TCDD exposed fish, biological rep4', 4968: 'Male offspring (F1) of TCDD exposed fish, biological rep5', 4980: 'tlr2 morphants: Pam3CSK4-injected ; Biological replica 1', 4981: 'tlr2 morphants: Pam3CSK4-injected ; Biological replica 2', 4982: 'tlr2 morphants: Pam3CSK4-injected ; Biological replica 3', 4984: 'Male offspring (F1) of DMSO exposed fish, biological rep1', 4985: 'Male offspring (F1) of DMSO exposed fish, biological rep2', 4986: 'Male offspring (F1) of DMSO exposed fish, biological rep3', 4987: 'Male offspring (F1) of DMSO exposed fish, biological rep4', 4988: 'Male offspring (F1) of DMSO exposed fish, biological rep5', 5012: 'Model organism or animal sample from Danio rerio R6030201', 5013: '15 somites stage, straightened, sectioned head to tail', 5016: '18 somites stage, straightened, sectioned tail to head', 5020: 'whole zebrafish 36hpf, control, biological replicate 1', 5021: 'whole zebrafish 36hpf, control, biological replicate 2', 5124: 'Wildtype: water-injected control; Biological replica 1', 5125: 'Wildtype: water-injected control; Biological replica 2', 5126: 'Wildtype: water-injected control; Biological replica 3', 5263: 'Unamputated dnHIF1a-expressing adult zebrafish, sample 1', 5264: 'Unamputated dnHIF1a-expressing adult zebrafish, sample 2', 5265: 'Bigheart mutant cardiac transcriptome from Danio rerio', 5296: 'zebrafish larvae exposed to hypoxia stress, replicate 1', 5297: 'zebrafish larvae exposed to hypoxia stress, replicate 2', 5298: 'zebrafish larvae exposed to hypoxia stress, replicate 3', 5312: '1h low-fat fed 6.5 dpf zebrafish larvae (low-fat cohort) rep1', 5313: '1h low-fat fed 6.5 dpf zebrafish larvae (low-fat cohort) rep2', 5314: '1h low-fat fed 6.5 dpf zebrafish larvae (low-fat cohort) rep3', 5315: '4h low-fat fed 6.5 dpf zebrafish larvae (low-fat cohort) rep1', 5316: '4h low-fat fed 6.5 dpf zebrafish larvae (low-fat cohort) rep2', 5317: '4h low-fat fed 6.5 dpf zebrafish larvae (low-fat cohort) rep3', 5324: 'zebrafish 5 days old larvae injected with PVP as a control', 5333: 'Medial neurogenic zone, no lesion, biological replicate 1', 5334: 'Medial neurogenic zone, no lesion, biological replicate 2', 5336: 'Conventionalized_6dpf_zebrafish_larvae_replicate3_8301', 2255: 'Control morfolino rep_3', 5350: 'embryonic hearts, RA treatment, T1h, biological replicate1', 5351: 'embryonic hearts, RA treatment, T2h, biological replicate1', 5352: 'embryonic hearts, RA treatment, T2h, biological replicate2', 5353: 'embryonic hearts, RA treatment, T2h, biological replicate3', 5354: 'embryonic hearts, RA treatment, T4h, biological replicate2', 5355: 'embryonic hearts, RA treatment, T4h, biological replicate3', 2258: 'Amioderone, 1.1 M. sample 024', 10451: 'Danio rerio: Large-harvested line, biological replicate 2, F5 offspring originating from wild caught population', 5376: 'tlr5a morphants: Flagellin-injected ; Biological replica 1', 5377: 'tlr5a morphants: Flagellin-injected ; Biological replica 2', 5378: 'tlr5a morphants: Flagellin-injected ; Biological replica 3', 5385: '10 somite stage, sectioned from anterior to posterior end', 5390: '15 somite stage, sectioned from posterior to anterior end', 5400: 'embryonic hearts, RA treatment, T12h, biological replicate1', 5401: 'embryonic hearts, RA treatment, T12h, biological replicate2', 5402: 'embryonic hearts, RA treatment, T12h, biological replicate3', 5414: '7 days post-amputation wildtype adult zebrafish, sample 1', 5415: '7 days post-amputation wildtype adult zebrafish, sample 2', 5416: '7 days post-amputation wildtype adult zebrafish, sample 3', 5432: 'Zebrafish NMLF at 4h after surgery, spinal cord transected 1', 5433: 'Zebrafish NMLF at 4h after surgery, spinal cord transected 2', 5434: 'Zebrafish NMLF at 4h after surgery, spinal cord transected 3', 5460: 'Larval_non-fluorescent_cells_post-macrophage_sorting1', 5461: 'Larval_non-fluorescent_cells_post-macrophage_sorting2', 5462: 'Larval_non-fluorescent_cells_post-macrophage_sorting3', 5468: '1h high-fat fed 6.5 dpf zebrafish larvae (high-fat cohort) rep1', 5469: '1h high-fat fed 6.5 dpf zebrafish larvae (high-fat cohort) rep2', 5470: '1h high-fat fed 6.5 dpf zebrafish larvae (high-fat cohort) rep3', 5471: '4h high-fat fed 6.5 dpf zebrafish larvae (high-fat cohort) rep1', 5472: '4h high-fat fed 6.5 dpf zebrafish larvae (high-fat cohort) rep2', 5473: '4h high-fat fed 6.5 dpf zebrafish larvae (high-fat cohort) rep3', 5474: 'Zebrafish NMLF at 11d after surgery, spinal cord transected 1', 5475: 'Zebrafish NMLF at 11d after surgery, spinal cord transected 2', 5476: 'Zebrafish NMLF at 11d after surgery, spinal cord transected 3', 5477: 'embryo injected with mockLNA, kept for 1hpf, biological rep2', 5478: 'embryo injected with mockLNA, kept for 1hpf, biological rep3', 5479: 'Zebrafish NMLF at 12h after surgery, spinal cord transected 1', 5480: 'Zebrafish NMLF at 12h after surgery, spinal cord transected 2', 5481: 'Zebrafish NMLF at 12h after surgery, spinal cord transected 3', 5482: 'embryo injected with mockLNA, kept for 7hpf, biological rep1', 5483: 'embryo injected with mockLNA, kept for 7hpf, biological rep2', 5484: 'embryo injected with mockLNA, kept for 7hpf, biological rep3', 5506: 'Zebrafish 48hpf heart mRNA sequencing - bbs6 over expression', 5510: 'embryonic hearts, DMSO treatment, T1h, biological replicate1', 5511: 'embryonic hearts, DMSO treatment, T1h, biological replicate2', 5512: 'embryonic hearts, DMSO treatment, T1h, biological replicate3', 5513: 'embryonic hearts, DMSO treatment, T4h, biological replicate1', 5514: 'embryonic hearts, DMSO treatment, T4h, biological replicate2', 5515: 'embryonic hearts, DMSO treatment, T4h, biological replicate3', 5522: 'embryonic hearts, TCDD treatment, T1h, biological replicate 1', 5523: 'embryonic hearts, TCDD treatment, T1h, biological replicate 2', 5524: 'embryonic hearts, TCDD treatment, T1h, biological replicate 3', 5525: 'embryonic hearts, TCDD treatment, T 4h, biological replicate1', 5526: 'embryonic hearts, TCDD treatment, T 4h, biological replicate2', 5527: 'embryonic hearts, TCDD treatment, T 4h, biological replicate3', 5529: 'embryo injected with mockLNA, kept for 24hpf, biological rep1', 5530: 'embryo injected with mockLNA, kept for 24hpf, biological rep2', 5531: 'embryo injected with mockLNA, kept for 24hpf, biological rep3', 3653: '17alpha-ethynylestradiol, 3.5 M. sample 034', 5540: 'Dorsal parenchyma, day 2 post lesion, biological replicate 1', 5541: 'Dorsal parenchyma, day 2 post lesion, biological replicate 2', 5542: 'Dorsal parenchyma, day 2 post lesion, biological replicate 3', 5545: 'Dorsal parenchyma, day 7 post lesion, biological replicate 1', 5546: 'Dorsal parenchyma, day 7 post lesion, biological replicate 2', 5547: 'Dorsal parenchyma, day 7 post lesion, biological replicate 3', 5555: 'embryonic hearts, TCDD treatment, T 2h, biological replicate 1', 5556: 'embryonic hearts, TCDD treatment, T 2h, biological replicate 2', 5557: 'embryonic hearts, TCDD treatment, T 2h, biological replicate 3', 5560: 'embryonic hearts, DMSO treatment, T12h, biological replicate1', 5561: 'embryonic hearts, DMSO treatment, T12h, biological replicate2', 5562: 'embryonic hearts, DMSO treatment, T12h, biological replicate3', 5572: 'embryonic hearts, TCDD treatment, T12h, biological replicate 1', 5573: 'embryonic hearts, TCDD treatment, T12h, biological replicate 2', 5574: 'embryonic hearts, TCDD treatment, T12h, biological replicate 3', 2303: 'ZMP_phenotype_130_1_pool1', 10496: 'Danio rerio: Large-harvested line, biological replicate 2, F11 offspring originating from wild caught population', 5665: '0.1% DMSO-exposed embryo at 2 hpf, Biological rep-1, Technical rep-1', 5666: '0.1% DMSO-exposed embryo at 2 hpf, Biological rep-1, Technical rep-2', 5667: '0.1% DMSO-exposed embryo at 2 hpf, Biological rep-3, Technical rep-1', 5668: '0.1% DMSO-exposed embryo at 2 hpf, Biological rep-3, Technical rep-2', 5669: '0.1% DMSO-exposed embryo at 6 hpf, Biological rep-1, Technical rep-1', 5670: '0.1% DMSO-exposed embryo at 6 hpf, Biological rep-2, Technical rep-1', 5671: '0.1% DMSO-exposed embryo at 6 hpf, Biological rep-2, Technical rep-2', 5672: '0.1% DMSO-exposed embryo at 6 hpf, Biological rep-3, Technical rep-2', 5679: 'RNA from embryos of 3 groups of Wildtype AB zebrafish at 60 hpf_1', 5680: 'RNA from embryos of 3 groups of Wildtype AB zebrafish at 60 hpf_2', 5681: 'RNA from embryos of 3 groups of Wildtype AB zebrafish at 60 hpf_3', 5682: 'RNA from embryos of 3 groups of Wildtype AB zebrafish at 36 hpf_1', 5683: 'RNA from embryos of 3 groups of Wildtype AB zebrafish at 36 hpf_2', 5684: 'RNA from embryos of 3 groups of Wildtype AB zebrafish at 36 hpf_3', 5685: 'RNA from embryos of 3 groups of Wildtype AB zebrafish at 48 hpf_1', 5686: 'RNA from embryos of 3 groups of Wildtype AB zebrafish at 48 hpf_2', 5687: 'RNA from embryos of 3 groups of Wildtype AB zebrafish at 48 hpf_3', 5710: 'Zebrafish retina with id2a morpholino treatment, replicate 1', 5711: 'Zebrafish retina with id2a morpholino treatment, replicate 2', 5763: 'RNA from embryos of 3 groups of tnnt2 morpholino fish at 60 hpf_1', 5764: 'RNA from embryos of 3 groups of tnnt2 morpholino fish at 60 hpf_2', 5765: 'RNA from embryos of 3 groups of tnnt2 morpholino fish at 60 hpf_3', 5766: 'RNA from embryos of 3 groups of tnnt2 morpholino fish at 36 hpf_1', 5767: 'RNA from embryos of 3 groups of tnnt2 morpholino fish at 36 hpf_2', 5768: 'RNA from embryos of 3 groups of tnnt2 morpholino fish at 36 hpf_3', 5769: 'RNA from embryos of 3 groups of tnnt2 morpholino fish at 48 hpf_1', 5770: 'RNA from embryos of 3 groups of tnnt2 morpholino fish at 48 hpf_2', 5771: 'RNA from embryos of 3 groups of tnnt2 morpholino fish at 48 hpf_3', 5782: 'whole zebrafish 36hpf, glucose treated, biological replicate 1', 5783: 'whole zebrafish 36hpf, glucose treated, biological replicate 2', 5784: 'tlr5a morphants: water-injected control; Biological replica 3', 5789: '2 M TDCIPP-exposed embryo at 2 hpf, Biological rep-1, Technical rep-1', 5790: '2 M TDCIPP-exposed embryo at 2 hpf, Biological rep-2, Technical rep-1', 5791: '2 M TDCIPP-exposed embryo at 2 hpf, Biological rep-2, Technical rep-2', 5792: '2 M TDCIPP-exposed embryo at 2 hpf, Biological rep-3, Technical rep-2', 5793: '2 M TDCIPP-exposed embryo at 6 hpf, Biological rep-1, Technical rep-1', 5794: '2 M TDCIPP-exposed embryo at 6 hpf, Biological rep-2, Technical rep-1', 5795: '2 M TDCIPP-exposed embryo at 6 hpf, Biological rep-3, Technical rep-1', 5796: '2 M TDCIPP-exposed embryo at 6 hpf, Biological rep-3, Technical rep-2', 5803: 'shield stage, sectioned from dorsal to ventral end, replicate', 5816: 'Dorsal subventricular zone, no lesion, biological replicate 1', 5817: 'Dorsal subventricular zone, no lesion, biological replicate 2', 5818: 'Dorsal subventricular zone, no lesion, biological replicate 3', 5832: 'Zebrafish retina with Id2aMM morpholino treatment, replicate 1', 5833: 'Zebrafish retina with Id2aMM morpholino treatment, replicate 2', 9165: 'Wild-type embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep1', 974: 'Seminoma-17', 975: '64-cell rep1', 976: '6hpf_CNOT7DN', 5863: 'zebrafish larvae maintained at control condition, replicate 2', 5864: 'zebrafish larvae maintained at control condition, replicate 3', 5885: 'shield stage, sectioned from vegetal to animal pole, replicate', 5945: 'Retinoic acid treated six hour post fertilization embryo rep 1', 5946: 'Retinoic acid treated six hour post fertilization embryo rep 2', 5967: 'zebrafish larvae maintained at control conditiion, replicate 1', 5998: 'Medial neurogenic zone, day 2 post lesion, biological replicate 1', 5999: 'embryo injected with anti-mir-34LNA, kept for 1hpf, biological rep1', 6000: 'embryo injected with anti-mir-34LNA, kept for 1hpf, biological rep2', 6001: 'embryo injected with anti-mir-34LNA, kept for 1hpf, biological rep3', 6003: 'Medial neurogenic zone, day 7 post lesion, biological replicate 1', 6004: 'Medial neurogenic zone, day 7 post lesion, biological replicate 2', 6005: 'embryo injected with anti-mir-34LNA, kept for 7hpf, biological rep1', 6006: 'embryo injected with anti-mir-34LNA, kept for 7hpf, biological rep2', 6007: 'embryo injected with anti-mir-34LNA, kept for 7hpf, biological rep3', 6031: 'Retinoic acid treated nine hour post fertilization embryo rep 1', 6032: 'Retinoic acid treated nine hour post fertilization embryo rep 2', 6042: '15 somites stage, straightened, sectioned tail to head, replicate', 10565: 'Danio rerio: Random-harvested line, biological replicate 1, F2 offspring originating from wild caught population', 6049: 'Retinoic acid treated four hour post fertilization embryo rep 1', 6050: 'Retinoic acid treated four hour post fertilization embryo rep 2', 6052: 'embryo injected with anti-mir-34LNA, kept for 24hpf, biological rep1', 10566: 'Danio rerio: Random-harvested line, biological replicate 2, F2 offspring originating from wild caught population', 6054: 'embryo injected with anti-mir-34LNA, kept for 24hpf, biological rep3', 2376: 'ZebrafishEmbryos_GoM_48-96', 10569: 'Danio rerio: Random-harvested line, biological replicate 2, F5 offspring originating from wild caught population', 1016: 'zmp_ph260_B1', 9209: 'Wild-type embryos heat-shocked for 30 mins and posterior PSM dissected after 30 mins, biological rep2', 9210: 'Wild-type embryos heat-shocked for 30 mins and posterior PSM dissected after 30 mins, biological rep3', 1019: 'Nano_1dpi_C', 6133: '3 hour DMSO treatment as a control for RA treatment, biological rep1', 6134: '3 hour DMSO treatment as a control for RA treatment, biological rep2', 6135: '3 hour DMSO treatment as a control for RA treatment, biological rep3', 6136: '3 hour DMSO treatment as a control for RA treatment, biological rep4', 6207: 'wild-type zebrafish treated with naphthol biological replicate 1', 6208: 'wild-type zebrafish treated with naphthol biological replicate 2', 6209: 'wild-type zebrafish treated with naphthol biological replicate 3', 6210: 'wild-type zebrafish treated with naphthol biological replicate 4', 6211: 'wild-type zebrafish treated with naphthol biological replicate 5', 6219: 'wild-type zebrafish no naphthol treatment biological replicate 1', 6220: 'wild-type zebrafish no naphthol treatment biological replicate 2', 6221: 'wild-type zebrafish no naphthol treatment biological replicate 3', 6222: 'wild-type zebrafish no naphthol treatment biological replicate 4', 6223: 'wild-type zebrafish no naphthol treatment biological replicate 5', 6230: '1.5 hour DMSO treatment as a control for RA treatment, biological rep1', 6231: '1.5 hour DMSO treatment as a control for RA treatment, biological rep2', 6232: '1.5 hour DMSO treatment as a control for RA treatment, biological rep3', 6233: '1.5 hour DMSO treatment as a control for RA treatment, biological rep4', 6244: '7 days post-amputation dnHIF1a-expressing adult zebrafish, sample 1', 6245: '7 days post-amputation dnHIF1a-expressing adult zebrafish, sample 2', 6246: '7 days post-amputation dnHIF1a-expressing adult zebrafish, sample 3', 6283: '3 hour DMSO treatment as a control for DAPT treatment, biological rep1', 6284: '3 hour DMSO treatment as a control for DAPT treatment, biological rep2', 6285: '3 hour DMSO treatment as a control for DAPT treatment, biological rep3', 6286: '3 hour DMSO treatment as a control for DAPT treatment, biological rep4', 10613: 'Danio rerio: Random-harvested line, biological replicate 1, F11 offspring originating from wild caught population', 6380: '1.5 hour DMSO treatment as a control for DAPT treatment, biological rep1', 6381: '1.5 hour DMSO treatment as a control for DAPT treatment, biological rep2', 6382: '1.5 hour DMSO treatment as a control for DAPT treatment, biological rep3', 6383: '1.5 hour DMSO treatment as a control for DAPT treatment, biological rep4', 6406: 'p53 knock out Zebrafish treated with naphthol biological replicate 1', 6407: 'p53 knock out Zebrafish treated with naphthol biological replicate 2', 6408: 'p53 knock out Zebrafish treated with naphthol biological replicate 3', 6409: 'p53 knock out Zebrafish treated with naphthol biological replicate 4', 6410: 'p53 knock out Zebrafish treated with naphthol biological replicate 5', 6414: '10 somite stage, sectioned from anterior to posterior end, replicate', 6418: 'p53 knock out Zebrafish no naphthol treatment biological replicate 1', 6419: 'p53 knock out Zebrafish no naphthol treatment biological replicate 2', 6420: 'p53 knock out Zebrafish no naphthol treatment biological replicate 3', 6421: 'p53 knock out Zebrafish no naphthol treatment biological replicate 4', 6422: 'p53 knock out Zebrafish no naphthol treatment biological replicate 5', 6433: 'DMSO-treated Runx1+23:GFP;kdrl:DsRed2 embryos, kdrl+ sort at 3 dpf, bio rep 1', 6434: 'DMSO-treated Runx1+23:GFP;kdrl:DsRed2 embryos, kdrl+ sort at 3 dpf, bio rep 2', 6435: 'DMSO-treated Runx1+23:GFP;kdrl:DsRed2 embryos, kdrl+ sort at 3 dpf, bio rep 3', 6481: 'Dorsal subventricular zone, day 2 post lesion, biological replicate 1', 6482: 'Dorsal subventricular zone, day 2 post lesion, biological replicate 2', 6483: 'Dorsal subventricular zone, day 2 post lesion, biological replicate 3', 6486: 'Dorsal subventricular zone, day 7 post lesion, biological replicate 1', 6487: 'Dorsal subventricular zone, day 7 post lesion, biological replicate 2', 6488: 'Dorsal subventricular zone, day 7 post lesion, biological replicate 3', 6558: 'Tumor #1, GFP-negative/mCherry-negative, Double Negative (DN) sorted cells', 6559: 'Tumor #2, GFP-negative/mCherry-negative, Double Negative (DN) sorted cells', 6772: 'embryonic hearts, vehicle control treatment, T1h, biological replicate 1', 6773: 'embryonic hearts, vehicle control treatment, T 2h, biological replicate1', 6774: 'embryonic hearts, vehicle control treatment, T 2h, biological replicate2', 6775: 'embryonic hearts, vehicle control treatment, T 4h, biological replicate1', 6776: 'embryonic hearts, vehicle control treatment, T 4h, biological replicate2', 6777: 'embryonic hearts, vehicle control treatment, T 4h, biological replicate3', 6812: 'DMSO-treated Runx1+23:GFP;kdrl:DsRed2 embryos, negative sort at 3 dpf, bio rep 1', 6813: 'DMSO-treated Runx1+23:GFP;kdrl:DsRed2 embryos, negative sort at 3 dpf, bio rep 2', 6814: 'DMSO-treated Runx1+23:GFP;kdrl:DsRed2 embryos, negative sort at 3 dpf, bio rep 3', 6822: 'embryonic hearts, vehicle control treatment, T12h, biological replicate 1', 6823: 'embryonic hearts, vehicle control treatment, T12h, biological replicate 2', 6824: 'embryonic hearts, vehicle control treatment, T12h, biological replicate 3', 6825: 'Male transgenerational offspring (F2) of TCDD exposed fish, biological rep4', 6826: 'Male transgenerational offspring (F2) of TCDD exposed fish, biological rep5', 6842: 'Male transgenerational offspring (F2) of DMSO exposed fish, biological rep1', 6843: 'Male transgenerational offspring (F2) of DMSO exposed fish, biological rep2', 6844: 'Male transgenerational offspring (F2) of DMSO exposed fish, biological rep3', 6845: 'Male transgenerational offspring (F2) of DMSO exposed fish, biological rep4', 6846: 'Male transgenerational offspring (F2) of DMSO exposed fish, biological rep5', 10139: 'Tg(hsp701;dnfgfr1-EGFP) embryos heat-shocked for 30 mins and posterior PSM dissected after 30 mins, biological rep2', 6963: 'Lycorine-treated Runx1+23:GFP;kdrl:DsRed2 embryos, kdrl+ sort at 3 dpf, bio rep 1', 6964: 'Lycorine-treated Runx1+23:GFP;kdrl:DsRed2 embryos, kdrl+ sort at 3 dpf, bio rep 2', 6965: 'Lycorine-treated Runx1+23:GFP;kdrl:DsRed2 embryos, kdrl+ sort at 3 dpf, bio rep 3', 6978: 'Zebrafish regenerating heart after 1 day post-amputation - replicate 1 (1DPA1)', 6980: 'Zebrafish regenerating heart after 1 day post-amputation - replicate 2 (1DPA2)', 6982: 'Zebrafish regenerating heart after 1 day post-amputation - replicate 3 (1DPA3)', 7097: 'Zebrafish regenerating heart after 3 days post-amputation - replicate 1 (3DPA1)', 7099: 'Zebrafish regenerating heart after 3 days post-amputation - replicate 2 (3DPA2)', 10140: 'Tg(hsp701;dnfgfr1-EGFP) embryos heat-shocked for 30 mins and posterior PSM dissected after 30 mins, biological rep3', 7101: 'Zebrafish regenerating heart after 5 days post-amputation - replicate 1 (5DPA1)', 7103: 'Zebrafish regenerating heart after 5 days post-amputation - replicate 2 (5DPA2)', 7105: 'Zebrafish regenerating heart after 7 days post-amputation - replicate 1 (7DPA1)', 7107: 'Zebrafish regenerating heart after 7 days post-amputation - replicate 2 (7DPA2)', 7109: 'Zebrafish regenerating heart after 7 days post-amputation - replicate 3 (7DPA3)', 10141: 'Tg(hsp701;dnfgfr1-EGFP) embryos heat-shocked for 30 mins and posterior PSM dissected after 30 mins, biological rep4', 15444: 'RNA seq-based liver transcriptome analysis revealed an activated MHC-I pathway and an inhibited MHC-II pathway at the early stage of vaccine immunization in zebrafish', 7342: 'Lycorine-treated Runx1+23:GFP;kdrl:DsRed2 embryos, negative sort at 3 dpf, bio rep 1', 7343: 'Lycorine-treated Runx1+23:GFP;kdrl:DsRed2 embryos, negative sort at 3 dpf, bio rep 2', 7344: 'Lycorine-treated Runx1+23:GFP;kdrl:DsRed2 embryos, negative sort at 3 dpf, bio rep 3', 7498: 'zebrafish 5 days old larvae yolk infection with Mycobacterium marinum total RNA', 7832: 'GEO accession GSM2082030 is currently private and is scheduled to be released on Dec 31, 2017.', 7833: 'GEO accession GSM2082031 is currently private and is scheduled to be released on Dec 31, 2017.', 7834: 'GEO accession GSM2082050 is currently private and is scheduled to be released on Dec 31, 2017.', 7835: 'GEO accession GSM2082042 is currently private and is scheduled to be released on Dec 31, 2017.', 7836: 'GEO accession GSM2082034 is currently private and is scheduled to be released on Dec 31, 2017.', 7837: 'GEO accession GSM2082044 is currently private and is scheduled to be released on Dec 31, 2017.', 7838: 'GEO accession GSM2082036 is currently private and is scheduled to be released on Dec 31, 2017.', 7839: 'GEO accession GSM2082037 is currently private and is scheduled to be released on Dec 31, 2017.', 7840: 'GEO accession GSM2082038 is currently private and is scheduled to be released on Dec 31, 2017.', 7841: 'GEO accession GSM2082048 is currently private and is scheduled to be released on Dec 31, 2017.', 7842: 'GEO accession GSM2082049 is currently private and is scheduled to be released on Dec 31, 2017.', 7864: 'Sphere treated, frozen at shield stage; denoted Sphere/Shield in processed data file', 7865: 'GEO accession GSM1678060 is currently private and is scheduled to be released on Mar 31, 2017.', 7866: 'GEO accession GSM1678061 is currently private and is scheduled to be released on Mar 31, 2017.', 7867: 'GEO accession GSM1678062 is currently private and is scheduled to be released on Mar 31, 2017.', 7871: 'GEO accession GSM1678057 is currently private and is scheduled to be released on Mar 31, 2017.', 7872: 'GEO accession GSM1678058 is currently private and is scheduled to be released on Mar 31, 2017.', 7873: 'GEO accession GSM1678059 is currently private and is scheduled to be released on Mar 31, 2017.', 7896: 'Wild type retina, 52hpf, pool of ten tissues, biological replicate 1 WR_52hpf_rep1 (WR52_1)', 7899: 'Wild type retina, 52hpf, pool of ten tissues, biological replicate 2 WR_52hpf_rep2 (WR52_2)', 7902: 'Wild type retina, 52hpf, pool of ten tissues, biological replicate 3 WR_52hpf_rep3 (WR52_3)', 8024: 'Tg(hsp70;gal4VP16) embryos heat-shocked for 1 hour dissected after 90 mins, biological rep1', 8025: 'Tg(hsp70;gal4VP16) embryos heat-shocked for 1 hour dissected after 90 mins, biological rep2', 8026: 'Tg(hsp70;gal4VP16) embryos heat-shocked for 1 hour dissected after 90 mins, biological rep3', 8027: 'Tg(hsp70;gal4VP16) embryos heat-shocked for 1 hour dissected after 90 mins, biological rep4', 9816: 'Tg(hsp:70:dkk1-gfp) embryos heat-shocked for 30 mins and posterior PSM dissected after 1 hour, biological rep4', 8080: 'Sphere treated, frozen at tailbud stage; denoted Sphere/Tailbud in processed data file'}
Accuracy of kNN classifier on training set (3227 labeled samples, 1817 total categories) for metadata field refinebio_title: 0.24
Accuracy of kNN classifier on test set (1384 labeled samples, 1817 total categories) for metadata field refinebio_title: 0.01
Clustering and imputing metadata field: refinebio_treatment
Mapped strings to integers:
{769: 'control', 4098: 'gulfport 250mg oil emulsion~48-96hpf, sac 96hpf', 2180: 'embryo dechorionation', 1217: 'cpf= 0.25 , cu= 0.25', 649: 'normal', 1688: 'treated with dmso', 1163: 'cpf= 0.1 , cu= 0.25', 435: 'dmso', 399: '0.1 gy', 1168: 'cpf= 0.6 , cu= 0.25', 1553: 'equivalent dmso', 3219: 'gulfport 250mg oil emulsion~0-48hpf', 2836: 'treated with leflunomide 6.5um', 919: 'cpf= 0 , cu= 0', 2200: 'selenium supplemented', 2329: 'spinal cord transection', 3841: 'dichlorodiphenyldichloroethylene (dde)', 866: 'atropine', 415: 'tcdd', 7344: 'injected at 2 dpf with live salmonella enterica serovar typhimurium bacteria', 1187: 'dieldrin+dde', 2344: 'injected at 2 dpf with pbs', 3242: 'injected with control morpholino', 1068: 'cpf= 0 , cu= 0.25', 4269: 'perdidokey 250mg oil emulsion~24-72hpf, sac 72hpf', 304: '0 gy', 432: 'none', 547: 'water', 3250: 'gulfport 250mg oil emulsion~48-96hpf', 1459: 'light exposure', 1078: 'unlesioned', 4284: 'fortmorgan 250mg oil emulsion~24-72hpf, sac 72hpf', 2366: '20 ug/l pentachlorophenol', 2369: '50 ug/l pentachlorophenol', 1090: 'amputation', 1352: 'isolated, 30min', 843: 'dieldrin', 4301: '5 hpf exposed to morphine at collected at 24 hpf', 1614: 'setb mo1-injected', 1360: '100nm rapamycin', 3923: 'attentive to fighting conspecifics, 30min', 915: '5um 11,12-eet', 1765: 'constant darkness', 4064: 'gulfport 250mg oil emulsion~0-48hpf, sac 48hpf', 2384: '11-ketotestosterone (11-kt)', 738: 'alcohol', 869: 'lycorine', 743: 'benzene', 872: '1% glucose', 1340: 'cold-stressed', 4842: 'inattentive to non-interacting conspecifics, 30min', 747: 'ethanol', 2927: 'benzene, toluene, formaldehyde', 4080: 'gulfport 250mg oil emulsion~24-72hpf, sac 72hpf', 753: 'injured', 4627: 'attentive to non-interacting conspecifics, 30min', 1268: 'formaldehyde', 1014: 'cpf= 0.1 , cu= 0', 2423: 'dimethyl sulfoxide (dmso)', 1019: 'cpf= 0.6 , cu= 0', 764: 'toluene', 1534: 'deionized water'}
Accuracy of kNN classifier on training set (184 labeled samples, 59 total categories) for metadata field refinebio_treatment: 0.66
Accuracy of kNN classifier on test set (80 labeled samples, 59 total categories) for metadata field refinebio_treatment: 0.50
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