organism_internal.tsv

organism    internal_accession
Homo sapiens    hgu133plus2
Mus musculus    mouse4302
Homo sapiens    hgu133a
Homo sapiens    hugene10st
Mus musculus    mogene10st
Rattus norvegicus   rat2302
Homo sapiens    hgu133a2
Homo sapiens    hgu219
Homo sapiens    hthgu133pluspm
Homo sapiens    hta20
Homo sapiens    hgu133b
Mus musculus    mgu74av2
Homo sapiens    hthgu133a
Mus musculus    mouse430a2
Homo sapiens    hgu95av2
Mus musculus    mogene20st
Homo sapiens    hugene11st
Homo sapiens    hugene20st
Mus musculus    moe430a
Drosophila melanogaster drosophila2
Homo sapiens    primeview
Mus musculus    htmg430pm
Schizosaccharomyces pombe   yeast2
Mus musculus    mogene11st
Rattus norvegicus   rgu34a
Sus scrofa  porcine
Mus musculus    htmg430a
Rattus norvegicus   rae230a
Rattus norvegicus   ragene10st
Saccharomyces cerevisiae    ygs98
Caenorhabditis elegans  celegans
Bos taurus  bovine
Mus musculus    mogene21st
Macaca mulatta  rhesus
Gallus gallus   chicken
Danio rerio zebrafish
Homo sapiens    hugene21st
Rattus norvegicus   htrat230pm
Drosophila melanogaster drosgenome1
Mus musculus    moe430b
Canis lupus familiaris  canine2
Homo sapiens    hgu95a
Sus scrofa  snowballs520824f
Homo sapiens    u133aaofav2
Rattus norvegicus   ragene20st
Mus musculus    mgu74bv2
Mus musculus    mgu74cv2
Homo sapiens    primeview_spikeins
Homo sapiens    hgu95b
Homo sapiens    hgu95c
Rattus norvegicus   ragene11st
Rattus norvegicus   rgu34b
Rattus norvegicus   rgu34c
Mus musculus    mu11ksuba
Mus musculus    mu11ksubb
Rattus norvegicus   ragene21st
Mus musculus    mgu74a
Bos taurus  bovgene10st
Gallus gallus   chigene10st
Danio rerio zebgene10st
Sus scrofa  porgene11st
Homo sapiens    hgu95d
Homo sapiens    hgu95e
Danio rerio zebgene11st
Rattus norvegicus   htratfocus
Bos taurus  bovgene11st
Rattus norvegicus   rae230b
Mus musculus    clariomsmouse
Canis lupus familiaris  canine
Homo sapiens    clariomdhuman
Canis lupus familiaris  cangene10st
Sus scrofa  porgene10st
Homo sapiens    clariomshuman
Equus caballus  equgene10st
Homo sapiens    clariomshumanht
Caenorhabditis elegans  elegene10st
Ovis aries  ovigene11st
Homo sapiens    hthgu133b
Ovis aries  ovigene10st
Gallus gallus   chigene11st
Drosophila melanogaster drogene11st
Caenorhabditis elegans  elegene11st
Drosophila melanogaster drogene10st
Mus musculus    htmg430b
Canis lupus familiaris  cangene11st
Rattus norvegicus   clariomsrat
Equus caballus  equgene11st

shortcodes.py

ba_sp = {'bovgene10st': 'Bt',
 'bovgene11st': 'Bt',
 'bovine': 'Bt',
 'cangene10st': 'Cf',
 'cangene11st': 'Cf',
 'canine': 'Cf',
 'canine2': 'Cf',
 'celegans': 'Ce',
 'chicken': 'Gg',
 'chigene10st': 'Gg',
 'chigene11st': 'Gg',
 'clariomdhuman': 'Hs',
 'clariomshuman': 'Hs',
 'clariomshumanht': 'Hs',
 'clariomsmouse': 'Mm',
 'clariomsrat': 'Rn',
 'drogene10st': 'Dm',
 'drogene11st': 'Dm',
 'drosgenome1': 'Dm',
 'drosophila2': 'Dm',
 'elegene10st': 'Ce',
 'elegene11st': 'Ce',
 'equgene10st': 'Ec',
 'equgene11st': 'Ec',
 'hgu133a': 'Hs',
 'hgu133a2': 'Hs',
 'hgu133b': 'Hs',
 'hgu133plus2': 'Hs',
 'hgu219': 'Hs',
 'hgu95a': 'Hs',
 'hgu95av2': 'Hs',
 'hgu95b': 'Hs',
 'hgu95c': 'Hs',
 'hgu95d': 'Hs',
 'hgu95e': 'Hs',
 'hta20': 'Hs',
 'hthgu133a': 'Hs',
 'hthgu133pluspm': 'Hs',
 'htmg430a': 'Hs',
 'hugene10st': 'Hs',
 'hugene11st': 'Hs',
 'hugene20st': 'Hs',
 'hugene21st': 'Hs',
 'mgu74a': 'Mm',
 'mgu74av2': 'Mm',
 'mgu74bv2': 'Mm',
 'mgu74cv2': 'Mm',
 'moe430a': 'Mm',
 'moe430b': 'Mm',
 'mogene10st': "Mm",
 'mogene11st': "Mm",
 'mogene20st': "Mm",
 'mogene21st': "Mm",
 'mouse4302': "Mm",
 'mouse430a2': "Mm",
 'mu11ksuba': "Mm",
 'mu11ksubb': "Mm",
 'ovigene10st': 'Oa',
 'ovigene11st': 'Oa',
 'porcine': 'Ss',
 'porgene10st': 'Ss',
 'porgene11st': 'Ss',
 'rae230a': 'Rn',
 'rae230b': 'Rn',
 'ragene10st': 'Rn',
 'ragene11st': 'Rn',
 'ragene20st': 'Rn',
 'ragene21st': 'Rn',
 'rat2302': 'Rn',
 'rgu34a': 'Rn',
 'rgu34b': 'Rn',
 'rgu34c': 'Rn',
 'rhesus': 'Mmu',
 'yeast2': 'Sc',
 'ygs98': 'Sc',
 'zebgene10st': 'Dr',
 'zebgene11st': 'Dr',
 'zebrafish': 'Dr'
}