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Miserlou/gist:e7f57836f7a6a534dc4851149192020f

Created April 1, 2019 19:15
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Bad SRA Stat Output
Raw
gistfile1.txt
$ sra-stat -x --statistics ERR519500
<Run accession="ERR519500" read_length="variable" spot_count="32952112" base_count="4850189422" base_count_bio="4850189422" spot_count_mates="27576357" base_count_bio_mates="4408409901" spot_count_bad="0" base_count_bio_bad="0" spot_count_filtered="0" base_count_bio_filtered="0" cmp_base_count="35415">
<Size value="2431143551" units="bytes"/>
<Bases cs_native="false" count="4850189422">
<Base value="A" count="1369386787"/>
<Base value="C" count="1047013379"/>
<Base value="G" count="1049160006"/>
<Base value="T" count="1384472113"/>
<Base value="N" count="195382"/>
</Bases>
2019-04-01T18:28:10 sra-stat.2.9.3 err: data invalid while comparing numeral - stored base count did not match observed base count
<AlignInfo>
<Ref seqId="CM000663.1" name="chr1" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000663.1"/>
<Ref seqId="CM000664.1" name="chr2" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000664.1"/>
<Ref seqId="CM000665.1" name="chr3" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000665.1"/>
<Ref seqId="CM000666.1" name="chr4" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000666.1"/>
<Ref seqId="CM000667.1" name="chr5" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000667.1"/>
<Ref seqId="CM000668.1" name="chr6" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000668.1"/>
<Ref seqId="CM000669.1" name="chr7" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000669.1"/>
<Ref seqId="CM000670.1" name="chr8" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000670.1"/>
<Ref seqId="CM000671.1" name="chr9" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000671.1"/>
<Ref seqId="CM000672.1" name="chr10" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000672.1"/>
<Ref seqId="CM000673.1" name="chr11" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000673.1"/>
<Ref seqId="CM000674.1" name="chr12" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000674.1"/>
<Ref seqId="CM000675.1" name="chr13" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/CM000675.1"/>
<Ref seqId="CM000676.1" name="chr14" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/CM000676.1"/>
<Ref seqId="CM000677.1" name="chr15" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/CM000677.1"/>
<Ref seqId="CM000678.1" name="chr16" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/CM000678.1"/>
<Ref seqId="CM000679.1" name="chr17" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/CM000679.1"/>
<Ref seqId="CM000680.1" name="chr18" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/CM000680.1"/>
<Ref seqId="CM000681.1" name="chr19" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/CM000681.1"/>
<Ref seqId="CM000682.1" name="chr20" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/CM000682.1"/>
<Ref seqId="CM000683.1" name="chr21" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/CM000683.1"/>
<Ref seqId="CM000684.1" name="chr22" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/CM000684.1"/>
<Ref seqId="CM000685.1" name="chrX" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000685.1"/>
<Ref seqId="CM000686.1" name="chrY" circular="false" local="remote" path="https://sra-download.ncbi.nlm.nih.gov/traces/refseq/CM000686.1"/>
<Ref seqId="DQ883643.3" name="ERCC-00156" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883643.3"/>
<Ref seqId="DQ883646.3" name="ERCC-00142" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883646.3"/>
<Ref seqId="DQ883651.3" name="ERCC-00019" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883651.3"/>
<Ref seqId="DQ883654.3" name="ERCC-00071" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883654.3"/>
<Ref seqId="DQ883658.3" name="ERCC-00160" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883658.3"/>
<Ref seqId="DQ883659.3" name="ERCC-00150" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883659.3"/>
<Ref seqId="DQ883661.3" name="ERCC-00040" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883661.3"/>
<Ref seqId="DQ883663.3" name="ERCC-00113" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883663.3"/>
<Ref seqId="DQ883664.3" name="ERCC-00016" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883664.3"/>
<Ref seqId="DQ883669.3" name="ERCC-00085" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883669.3"/>
<Ref seqId="DQ883671.3" name="ERCC-00048" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883671.3"/>
<Ref seqId="DQ883673.3" name="ERCC-00078" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883673.3"/>
<Ref seqId="DQ883682.3" name="ERCC-00084" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883682.3"/>
<Ref seqId="DQ883685.3" name="ERCC-00111" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883685.3"/>
<Ref seqId="DQ883689.3" name="ERCC-00025" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/DQ883689.3"/>
<Ref seqId="GL000191.1" name="GL000191.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000191.1"/>
<Ref seqId="GL000192.1" name="GL000192.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000192.1"/>
<Ref seqId="GL000193.1" name="GL000193.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000193.1"/>
<Ref seqId="GL000194.1" name="GL000194.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000194.1"/>
<Ref seqId="GL000195.1" name="GL000195.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000195.1"/>
<Ref seqId="GL000196.1" name="GL000196.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000196.1"/>
<Ref seqId="GL000197.1" name="GL000197.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000197.1"/>
<Ref seqId="GL000198.1" name="GL000198.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000198.1"/>
<Ref seqId="GL000199.1" name="GL000199.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000199.1"/>
<Ref seqId="GL000200.1" name="GL000200.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000200.1"/>
<Ref seqId="GL000201.1" name="GL000201.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000201.1"/>
<Ref seqId="GL000202.1" name="GL000202.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000202.1"/>
<Ref seqId="GL000203.1" name="GL000203.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000203.1"/>
<Ref seqId="GL000204.1" name="GL000204.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000204.1"/>
<Ref seqId="GL000205.1" name="GL000205.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000205.1"/>
<Ref seqId="GL000206.1" name="GL000206.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000206.1"/>
<Ref seqId="GL000207.1" name="GL000207.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000207.1"/>
<Ref seqId="GL000208.1" name="GL000208.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000208.1"/>
<Ref seqId="GL000209.1" name="GL000209.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000209.1"/>
<Ref seqId="GL000210.1" name="GL000210.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000210.1"/>
<Ref seqId="GL000211.1" name="GL000211.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000211.1"/>
<Ref seqId="GL000212.1" name="GL000212.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000212.1"/>
<Ref seqId="GL000213.1" name="GL000213.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000213.1"/>
<Ref seqId="GL000214.1" name="GL000214.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000214.1"/>
<Ref seqId="GL000215.1" name="GL000215.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000215.1"/>
<Ref seqId="GL000216.1" name="GL000216.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000216.1"/>
<Ref seqId="GL000217.1" name="GL000217.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000217.1"/>
<Ref seqId="GL000218.1" name="GL000218.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000218.1"/>
<Ref seqId="GL000219.1" name="GL000219.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000219.1"/>
<Ref seqId="GL000220.1" name="GL000220.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000220.1"/>
<Ref seqId="GL000221.1" name="GL000221.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000221.1"/>
<Ref seqId="GL000222.1" name="GL000222.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000222.1"/>
<Ref seqId="GL000223.1" name="GL000223.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000223.1"/>
<Ref seqId="GL000224.1" name="GL000224.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000224.1"/>
<Ref seqId="GL000225.1" name="GL000225.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000225.1"/>
<Ref seqId="GL000226.1" name="GL000226.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000226.1"/>
<Ref seqId="GL000227.1" name="GL000227.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000227.1"/>
<Ref seqId="GL000228.1" name="GL000228.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000228.1"/>
<Ref seqId="GL000229.1" name="GL000229.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000229.1"/>
<Ref seqId="GL000230.1" name="GL000230.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000230.1"/>
<Ref seqId="GL000231.1" name="GL000231.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000231.1"/>
<Ref seqId="GL000232.1" name="GL000232.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000232.1"/>
<Ref seqId="GL000233.1" name="GL000233.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000233.1"/>
<Ref seqId="GL000234.1" name="GL000234.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000234.1"/>
<Ref seqId="GL000235.1" name="GL000235.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000235.1"/>
<Ref seqId="GL000236.1" name="GL000236.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000236.1"/>
<Ref seqId="GL000237.1" name="GL000237.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000237.1"/>
<Ref seqId="GL000238.1" name="GL000238.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000238.1"/>
<Ref seqId="GL000239.1" name="GL000239.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000239.1"/>
<Ref seqId="GL000240.1" name="GL000240.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000240.1"/>
<Ref seqId="GL000241.1" name="GL000241.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000241.1"/>
<Ref seqId="GL000242.1" name="GL000242.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000242.1"/>
<Ref seqId="GL000243.1" name="GL000243.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000243.1"/>
<Ref seqId="GL000244.1" name="GL000244.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000244.1"/>
<Ref seqId="GL000245.1" name="GL000245.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000245.1"/>
<Ref seqId="GL000246.1" name="GL000246.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000246.1"/>
<Ref seqId="GL000247.1" name="GL000247.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000247.1"/>
<Ref seqId="GL000248.1" name="GL000248.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000248.1"/>
<Ref seqId="GL000249.1" name="GL000249.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000249.1"/>
<Ref seqId="GL000250.1" name="GL000250.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000250.1"/>
<Ref seqId="GL000251.1" name="GL000251.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000251.1"/>
<Ref seqId="GL000252.1" name="GL000252.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000252.1"/>
<Ref seqId="GL000253.1" name="GL000253.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000253.1"/>
<Ref seqId="GL000254.1" name="GL000254.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000254.1"/>
<Ref seqId="GL000255.1" name="GL000255.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000255.1"/>
<Ref seqId="GL000256.1" name="GL000256.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000256.1"/>
<Ref seqId="GL000257.1" name="GL000257.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000257.1"/>
<Ref seqId="GL000258.1" name="GL000258.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL000258.1"/>
<Ref seqId="GL339449.2" name="GL339449.2" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL339449.2"/>
<Ref seqId="GL339450.1" name="GL339450.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL339450.1"/>
<Ref seqId="GL383516.1" name="GL383516.1" circular="false" local="local"/>
<Ref seqId="GL383517.1" name="GL383517.1" circular="false" local="local"/>
<Ref seqId="GL383518.1" name="GL383518.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383518.1"/>
<Ref seqId="GL383519.1" name="GL383519.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383519.1"/>
<Ref seqId="GL383520.1" name="GL383520.1" circular="false" local="local"/>
<Ref seqId="GL383521.1" name="GL383521.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383521.1"/>
<Ref seqId="GL383522.1" name="GL383522.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383522.1"/>
<Ref seqId="GL383523.1" name="GL383523.1" circular="false" local="local"/>
<Ref seqId="GL383524.1" name="GL383524.1" circular="false" local="local"/>
<Ref seqId="GL383525.1" name="GL383525.1" circular="false" local="local"/>
<Ref seqId="GL383526.1" name="GL383526.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383526.1"/>
<Ref seqId="GL383527.1" name="GL383527.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383527.1"/>
<Ref seqId="GL383528.1" name="GL383528.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383528.1"/>
<Ref seqId="GL383529.1" name="GL383529.1" circular="false" local="local"/>
<Ref seqId="GL383530.1" name="GL383530.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383530.1"/>
<Ref seqId="GL383531.1" name="GL383531.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383531.1"/>
<Ref seqId="GL383532.1" name="GL383532.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383532.1"/>
<Ref seqId="GL383533.1" name="GL383533.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383533.1"/>
<Ref seqId="GL383534.2" name="GL383534.2" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383534.2"/>
<Ref seqId="GL383535.1" name="GL383535.1" circular="false" local="local"/>
<Ref seqId="GL383536.1" name="GL383536.1" circular="false" local="local"/>
<Ref seqId="GL383537.1" name="GL383537.1" circular="false" local="local"/>
<Ref seqId="GL383538.1" name="GL383538.1" circular="false" local="local"/>
<Ref seqId="GL383539.1" name="GL383539.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383539.1"/>
<Ref seqId="GL383540.1" name="GL383540.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383540.1"/>
<Ref seqId="GL383541.1" name="GL383541.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383541.1"/>
<Ref seqId="GL383542.1" name="GL383542.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383542.1"/>
<Ref seqId="GL383543.1" name="GL383543.1" circular="false" local="local"/>
<Ref seqId="GL383544.1" name="GL383544.1" circular="false" local="local"/>
<Ref seqId="GL383545.1" name="GL383545.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383545.1"/>
<Ref seqId="GL383546.1" name="GL383546.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383546.1"/>
<Ref seqId="GL383547.1" name="GL383547.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383547.1"/>
<Ref seqId="GL383548.1" name="GL383548.1" circular="false" local="local"/>
<Ref seqId="GL383549.1" name="GL383549.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383549.1"/>
<Ref seqId="GL383550.1" name="GL383550.1" circular="false" local="local"/>
<Ref seqId="GL383551.1" name="GL383551.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383551.1"/>
<Ref seqId="GL383552.1" name="GL383552.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383552.1"/>
<Ref seqId="GL383553.2" name="GL383553.2" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383553.2"/>
<Ref seqId="GL383554.1" name="GL383554.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383554.1"/>
<Ref seqId="GL383555.1" name="GL383555.1" circular="false" local="local"/>
<Ref seqId="GL383556.1" name="GL383556.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383556.1"/>
<Ref seqId="GL383557.1" name="GL383557.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/GL383557.1"/>
<Ref seqId="GL383558.1" name="GL383558.1" circular="false" local="local"/>
<Ref seqId="GL383559.2" name="GL383559.2" circular="false" local="local"/>
<Ref seqId="GL383560.1" name="GL383560.1" circular="false" local="local"/>
<Ref seqId="GL383561.2" name="GL383561.2" circular="false" local="local"/>
<Ref seqId="GL383562.1" name="GL383562.1" circular="false" local="local"/>
<Ref seqId="GL383563.2" name="GL383563.2" circular="false" local="local"/>
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<Ref seqId="KC702235.1" name="ERCC-00165" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/KC702235.1"/>
<Ref seqId="KC702237.1" name="ERCC-00170" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/KC702237.1"/>
<Ref seqId="KC702238.1" name="ERCC-00171" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/KC702238.1"/>
<Ref seqId="KE332495.1" name="KE332495.1" circular="false" local="local"/>
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<Ref seqId="KE332500.1" name="KE332500.1" circular="false" local="local"/>
<Ref seqId="KE332501.1" name="KE332501.1" circular="false" local="remote" path="/Users/rjones/ncbi/public/refseq/KE332501.1"/>
<Ref seqId="KE332502.1" name="KE332502.1" circular="false" local="local"/>
<Ref seqId="KE332505.1" name="KE332505.1" circular="false" local="local"/>
<Ref seqId="KE332506.1" name="KE332506.1" circular="false" local="local"/>
</AlignInfo>
<Statistics nreads="variable"/>
<QualityCount>
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<Quality value="27" count="24605157"/>
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<Quality value="37" count="483650994"/>
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<Quality value="39" count="545876222"/>
<Quality value="40" count="604243745"/>
<Quality value="41" count="1376756695"/>
</QualityCount>
<Databases>
<Database>
<Table name="PRIMARY_ALIGNMENT">
<Statistics source="meta">
<Rows count="60527574"/>
<Elements count="4850156146"/>
</Statistics>
</Table>
<Table name="REFERENCE">
<Statistics source="meta">
<Rows count="647179"/>
<Elements count="3234897662"/>
</Statistics>
</Table>
<Table name="SECONDARY_ALIGNMENT">
<Statistics source="meta">
<Rows count="10713654"/>
<Elements count="724892286"/>
</Statistics>
</Table>
<Table name="SEQUENCE">
<Statistics source="meta">
<Rows count="32952112"/>
<Elements count="4850189422"/>
</Statistics>
</Table>
</Database>
</Databases>
<Changes>
<Change change="QUAL changed" reason="reversed">30197570</Change>
<Change change="SEQ changed" reason="reversed">30197570</Change>
<Change change="record made unaligned" reason="low match count">2102</Change>
<Change change="mate alignment lost" reason="missing mate alignment info">983221</Change>
</Changes>
<AssemblyStatistics n50="408430" l50="33" n90="169437" l90="90" n="39869422" l="131"/>
</Run>
2019-04-01T18:28:24 sra-stat.2.9.3 warn: Mismatch between calculated and recorded statistics
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