foo.sh

#!/bin/bash

COMPILE=""

ssh bsd9 "mkdir -p $1 && rm -rf $1/*"

for filename in *; do
    if [[ -f $filename ]]; then
        EXT=${filename##*.}
        if [ "$EXT" == c ] || [ "$EXT" == h ]; then
            COMPILE=$COMPILE" "$filename
            scp $filename bsd9:$1/$filename
        fi
    fi
done

echo "mpicc -o run "$COMPILE
ssh bsd9 "cd $1 && mpicc -o run $COMPILE"