MrHedmad

Bash wrapper to connect to unito VPN

See this blog post

MrHedmad

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output:
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scRNA-seq is useful for detecting changes in cell sub-populations in different conditions (or detecting sub-populations de novo), but not much else. It can also be used to detect some molecular mechanisms, but not really. Please don't do random experiments hoping to see "something".

There must be multiple biological samples from the population of interest, each with the many number of measured cells.

There are many types of single cells analyses, (e.g. "tissue-wide", spatial, which resolves the cells based on their position in the tissue, etc...), so you must really be sure of what the target is (the entity that needs to be measured), again, the bio question needs to be extremely clear.

MrHedmad

MrHedmad

MrHedmad

from tqdm import tqdm
from random import randint, random, choice
from pathlib import Path

from sys import stdout

def rand_bool(chance: float) -> bool:
    return random() < chance
    

MrHedmad

"""Metasample

This script performs stratified sampling on an input .csv file, reducing the
number of columns and rows.

To run, you must install `pandas` and have `xsv` (https://github.com/BurntSushi/xsv)
in your PATH.
"""

## --- LICENSE ---

MrHedmad

Connecting Linux to the Unito VPN

The official guide is obviously terrible at doing its job for linux, so I thought I'd write a tiny guide on how to do this myself. I use Arch, so this will be arch-centric. If you use other distros, lookup your version of the same packages as the ones Arch ships, but they should be fairly generic.

Using OpenConnect

Install openconnect. For arch, this is pacman -Syu openconnect. Once you did, you can connect to the VPN through:

MrHedmad

My Corne Layout

It is based on some online layout that I cannot find. If someone recognizes it, let me know.

The corne has this shape:

┌──┬──┬──┬──┬──┬──┐       ┌──┬──┬──┬──┬──┬──┐
├──┼──┼──┼──┼──┼──┤       ├──┼──┼──┼──┼──┼──┤
├──┼──┼──┼──┼──┼──┤-------├──┼──┼──┼──┼──┼──┤
└──┴──┴──┴──┼──┼──┼──┐ ┌──┼──┼──┼──┴──┴──┴──┘
 └──┴──┴──┘ └──┴──┴──┘

MrHedmad

def path_type(
    obj_type: Literal["dir", "file", "file_strict"]
) -> Callable[[str], Path]:
    assert obj_type in (
        "dir",
        "file",
        "file_strict",
    ), f"Invalid object type check: {obj_type}"

    if obj_type == "dir":

MrHedmad

[Security]
EAP-Method=PEAP
EAP-Identity=anonymous
EAP-PEAP-Phase2-Method=MSCHAPV2
EAP-PEAP-Phase2-Identity=myshortusername@unito.it
EAP-PEAP-Phase2-Password=mypassword

[Settings]
AutoConnect=True