gedit Syntax Highlighting for LAMMPS Molecular Dynamics Simulator (to use $sudo cp lammps.lang /usr/share/gtksourceview-3.0/language-specs)

lammps.lang

<?xml version="1.0" encoding="UTF-8"?>
<language id="lammps" _name="Lammps" version="2.0" _section="Scientific">
  <metadata>
    <property name="mimetypes">text/lammps</property>
    <property name="globs">*.in;*.lammps</property>
  </metadata>

  <styles>
    <style id="comment" _name="Comment" map-to="def:comment"/>
    <style id="keyword" _name="Keyword" map-to="def:keyword"/>
    <style id="constant" _name="Sub-keyword" map-to="def:constant"/>
  </styles>

  <definitions>

	<context id="lammps" class="no-spell-check">
	<include>

	<context ref="def:decimal"/>
	<context ref="def:float"/>
	<context ref="def:string"/>

    <context id="comment" style-ref="comment" end-at-line-end="true">
		<start>#</start>
		<end>$</end>
    </context>


    <context id="keywords" style-ref="keyword">
		<keyword>angle_coeff</keyword>
		<keyword>angle_style</keyword>
		<keyword>atom_modify</keyword>
		<keyword>atom_style</keyword>
		<keyword>balance</keyword>
		<keyword>bond_coeff</keyword>
		<keyword>bond_style</keyword>
		<keyword>boundary</keyword>
		<keyword>side</keyword>
		<keyword>change_box</keyword>
		<keyword>clear	comm_modify</keyword>
		<keyword>comm_style</keyword>
		<keyword>compute</keyword>
		<keyword>compute_modify</keyword>
		<keyword>create_atoms</keyword>
		<keyword>create_bonds</keyword>
		<keyword>create_box</keyword>
		<keyword>delete_atoms</keyword>
		<keyword>delete_bonds</keyword>
		<keyword>dielectric</keyword>
		<keyword>dihedral_coeff</keyword>
		<keyword>dihedral_style</keyword>
		<keyword>dimension</keyword>
		<keyword>displace_atoms</keyword>
		<keyword>dump</keyword>
		<keyword>dump_modify</keyword>
		<keyword>echo</keyword>
		<keyword>fix</keyword>
		<keyword>fix_modify</keyword>
		<keyword>group</keyword>
		<keyword>if</keyword>
		<keyword>improper_coeff</keyword>
		<keyword>improper_style</keyword>
		<keyword>include</keyword>
		<keyword>jump</keyword>
		<keyword>kspace_modify</keyword>
		<keyword>kspace_style</keyword>
		<keyword>label</keyword>
		<keyword>lattice</keyword>
		<keyword>log</keyword>
		<keyword>mass</keyword>
		<keyword>minimize</keyword>
		<keyword>min_modify</keyword>
		<keyword>min_style</keyword>
		<keyword>molecule</keyword>
		<keyword>neb</keyword>
		<keyword>neigh_modify</keyword>
		<keyword>neighbor</keyword>
		<keyword>newton</keyword>
		<keyword>next</keyword>
		<keyword>package</keyword>
		<keyword>pair_coeff</keyword>
		<keyword>pair_modify</keyword>
		<keyword>pair_style</keyword>
		<keyword>pair_write</keyword>
		<keyword>partition</keyword>
		<keyword>prd</keyword>
		<keyword>print</keyword>
		<keyword>processors</keyword>
		<keyword>python</keyword>
		<keyword>quit</keyword>
		<keyword>read_data</keyword>
		<keyword>read_dump</keyword>
		<keyword>read_restart</keyword>
		<keyword>region</keyword>
		<keyword>replicate</keyword>
		<keyword>reset_timestep</keyword>
		<keyword>restart</keyword>
		<keyword>run</keyword>
		<keyword>run_style</keyword>
		<keyword>set</keyword>
		<keyword>shell</keyword>
		<keyword>special_bonds</keyword>
		<keyword>suffix</keyword>
		<keyword>tad</keyword>
		<keyword>temper</keyword>
		<keyword>thermo</keyword>
		<keyword>thermo_modify</keyword>
		<keyword>thermo_style</keyword>
		<keyword>timestep</keyword>
		<keyword>uncompute</keyword>
		<keyword>undump</keyword>
		<keyword>unfix</keyword>
		<keyword>units</keyword>
		<keyword>variable</keyword>
		<keyword>velocity</keyword>
		<keyword>write_data</keyword>
		<keyword>write_dump</keyword>
		<keyword>write_restart</keyword>
			<keyword>nvt</keyword>
			<keyword>wall.*</keyword>
			<keyword>ave.*</keyword>
	</context>

	<context id="constant" style-ref="constant">
		<keyword>adapt</keyword>
		<keyword>deform</keyword>
		<keyword>freeze</keyword>
		<keyword>momentum</keyword>
		<keyword>npt</keyword>
		<keyword>nve/line</keyword>
		<keyword>oneway</keyword>
		<keyword>qeq/comb</keyword>
		<keyword>rigid</keyword>
		<keyword>rigid/small/nve</keyword>
		<keyword>store/force</keyword>
		<keyword>tmd</keyword>
		<keyword>addforce</keyword>
		<keyword>deposit</keyword>
		<keyword>gcmc</keyword>
		<keyword>move</keyword>
		<keyword>npt/asphere</keyword>
		<keyword>nve/noforce</keyword>
		<keyword>orient/fcc</keyword>
		<keyword>qeq/dynamic</keyword>
		<keyword>rigid/nph</keyword>
		<keyword>rigid/small/nvt</keyword>
		<keyword>store/state</keyword>
		<keyword>ttm</keyword>
		<keyword>append/atoms</keyword>
		<keyword>drag</keyword>
		<keyword>gld</keyword>
		<keyword>msst</keyword>
		<keyword>npt/sphere</keyword>
		<keyword>nve/sphere</keyword>
		<keyword>planeforce</keyword>
		<keyword>qeq/point</keyword>
		<keyword>rigid/npt</keyword>
		<keyword>setforce</keyword>
		<keyword>temp/berendsen</keyword>
		<keyword>tune/kspace</keyword>
		<keyword>atom/swap</keyword>
		<keyword>balance</keyword>
		<keyword>dt/reset</keyword>
		<keyword>gravity</keyword>
		<keyword>neb</keyword>
		<keyword>nve</keyword>
		<keyword>nve/tri</keyword>
		<keyword>poems</keyword>
		<keyword>qeq/shielded</keyword>
		<keyword>rigid/nve</keyword>
		<keyword>shake</keyword>
		<keyword>temp/csld</keyword>
		<keyword>vector</keyword>
		<keyword>bond/break</keyword>
		<keyword>efield</keyword>
		<keyword>heat</keyword>
		<keyword>nph</keyword>
		<keyword>nve/asphere</keyword>
		<keyword>pour</keyword>
		<keyword>qeq/slater</keyword>
		<keyword>rigid/nvt</keyword>
		<keyword>spring</keyword>
		<keyword>temp/csvr</keyword>
		<keyword>viscosity</keyword>
		<keyword>bond/create</keyword>
		<keyword>enforce2d</keyword>
		<keyword>indent</keyword>
		<keyword>nphug</keyword>
		<keyword>nve/asphere/noforce</keyword>
		<keyword>nvt/asphere</keyword>
		<keyword>press/berendsen</keyword>
		<keyword>reax/bonds</keyword>
		<keyword>rigid/small</keyword>
		<keyword>spring/rg</keyword>
		<keyword>temp/rescale</keyword>
		<keyword>viscous</keyword>
		<keyword>bond/swap</keyword>
		<keyword>evaporate</keyword>
		<keyword>langevin</keyword>
		<keyword>nph/asphere</keyword>
		<keyword>nve/body</keyword>
		<keyword>nvt/sllod</keyword>
		<keyword>print</keyword>
		<keyword>recenter</keyword>
		<keyword>rigid/small/nph</keyword>
		<keyword>spring/self</keyword>
		<keyword>tfmc</keyword>
		<keyword>box/relax</keyword>
		<keyword>external</keyword>
		<keyword>lineforce</keyword>
		<keyword>nph/sphere</keyword>
		<keyword>nve/limit</keyword>
		<keyword>nvt/sphere</keyword>
		<keyword>property/atom</keyword>
		<keyword>restrain</keyword>
		<keyword>rigid/small/npt</keyword>
		<keyword>srd</keyword>
		<keyword>thermal/conductivity</keyword>
		<keyword>angle/local</keyword>
		<keyword>cluster/atom</keyword>
		<keyword>damage/atom</keyword>
		<keyword>erotate/sphere</keyword>
		<keyword>heat/flux</keyword>
		<keyword>msd</keyword>
		<keyword>pe</keyword>
		<keyword>property/chunk</keyword>
		<keyword>snad/atom</keyword>
		<keyword>temp/chunk</keyword>
		<keyword>temp/sphere</keyword>
		<keyword>angmom/chunk</keyword>
		<keyword>cna/atom</keyword>
		<keyword>dihedral/local</keyword>
		<keyword>erotate/sphere/atom</keyword>
		<keyword>improper/local</keyword>
		<keyword>msd/chunk</keyword>
		<keyword>pe/atom</keyword>
		<keyword>rdf</keyword>
		<keyword>snav/atom</keyword>
		<keyword>temp/deform</keyword>
		<keyword>ti</keyword>
		<keyword>body/local</keyword>
		<keyword>com</keyword>
		<keyword>dilatation/atom</keyword>
		<keyword>event/displace</keyword>
		<keyword>inertia/chunk</keyword>
		<keyword>msd/nongauss</keyword>
		<keyword>plasticity/atom</keyword>
		<keyword>reduce</keyword>
		<keyword>stress/atom</keyword>
		<keyword>temp/partial</keyword>
		<keyword>torque/chunk</keyword>
		<keyword>bond/local</keyword>
		<keyword>com/chunk</keyword>
		<keyword>displace/atom</keyword>
		<keyword>group/group</keyword>
		<keyword>ke</keyword>
		<keyword>omega/chunk</keyword>
		<keyword>pressure</keyword>
		<keyword>reduce/region</keyword>
		<keyword>temp</keyword>
		<keyword>temp/profile</keyword>
		<keyword>vacf</keyword>
		<keyword>centro/atom</keyword>
		<keyword>contact/atom</keyword>
		<keyword>erotate/asphere</keyword>
		<keyword>gyration</keyword>
		<keyword>ke/atom</keyword>
		<keyword>pair</keyword>
		<keyword>property/atom</keyword>
		<keyword>slice</keyword>
		<keyword>temp/asphere</keyword>
		<keyword>temp/ramp</keyword>
		<keyword>vcm/chunk</keyword>
		<keyword>chunk/atom</keyword>
		<keyword>coord/atom</keyword>
		<keyword>erotate/rigid</keyword>
		<keyword>gyration/chunk</keyword>
		<keyword>ke/rigid</keyword>
		<keyword>pair/local</keyword>
		<keyword>property/local</keyword>
		<keyword>sna/atom</keyword>
		<keyword>temp/com</keyword>
		<keyword>temp/region</keyword>
		<keyword>voronoi/atom</keyword>
		<keyword>none</keyword>
		<keyword>airebo</keyword>
		<keyword>born</keyword>
		<keyword>brownian</keyword>
		<keyword>buck/coul/long</keyword>
		<keyword>comb</keyword>
		<keyword>coul/dsf</keyword>
		<keyword>coul/wolf</keyword>
		<keyword>eam</keyword>
		<keyword>gauss</keyword>
		<keyword>gran/hooke/history</keyword>
		<keyword>lcbop</keyword>
		<keyword>lj/charmm/coul/long</keyword>
		<keyword>lj/class2/coul/long</keyword>
		<keyword>lj/cut/coul/dsf</keyword>
		<keyword>lj/cut/dipole/long</keyword>
		<keyword>lj/gromacs</keyword>
		<keyword>lj/long/tip4p/long</keyword>
		<keyword>lubricate</keyword>
		<keyword>meam</keyword>
		<keyword>nm/cut</keyword>
		<keyword>peri/lps</keyword>
		<keyword>rebo</keyword>
		<keyword>sw</keyword>
		<keyword>tersoff/zbl</keyword>
		<keyword>yukawa</keyword>
		<keyword>hybrid</keyword>
		<keyword>beck</keyword>
		<keyword>born/coul/long</keyword>
		<keyword>brownian/poly</keyword>
		<keyword>buck/coul/msm</keyword>
		<keyword>comb3</keyword>
		<keyword>coul/long</keyword>
		<keyword>dpd</keyword>
		<keyword>eam/alloy</keyword>
		<keyword>gayberne</keyword>
		<keyword>hbond/dreiding/lj</keyword>
		<keyword>line/lj</keyword>
		<keyword>lj/charmm/coul/msm</keyword>
		<keyword>lj/cut</keyword>
		<keyword>lj/cut/coul/long</keyword>
		<keyword>lj/cut/tip4p/cut</keyword>
		<keyword>lj/gromacs/coul/gromacs</keyword>
		<keyword>lj/smooth</keyword>
		<keyword>lubricate/poly</keyword>
		<keyword>mie/cut</keyword>
		<keyword>nm/cut/coul/cut</keyword>
		<keyword>peri/pmb</keyword>
		<keyword>resquared</keyword>
		<keyword>table</keyword>
		<keyword>tip4p/cut</keyword>
		<keyword>yukawa/colloid</keyword>
		<keyword>hybrid/overlay</keyword>
		<keyword>body</keyword>
		<keyword>born/coul/msm</keyword>
		<keyword>buck</keyword>
		<keyword>buck/long/coul/long</keyword>
		<keyword>coul/cut</keyword>
		<keyword>coul/msm</keyword>
		<keyword>dpd/tstat</keyword>
		<keyword>eam/fs</keyword>
		<keyword>gran/hertz/history</keyword>
		<keyword>hbond/dreiding/morse</keyword>
		<keyword>lj/charmm/coul/charmm</keyword>
		<keyword>lj/class2</keyword>
		<keyword>lj/cut/coul/cut</keyword>
		<keyword>lj/cut/coul/msm</keyword>
		<keyword>lj/cut/tip4p/long</keyword>
		<keyword>lj/long/coul/long</keyword>
		<keyword>lj/smooth/linear</keyword>
		<keyword>lubricateU</keyword>
		<keyword>morse</keyword>
		<keyword>nm/cut/coul/long</keyword>
		<keyword>peri/ves</keyword>
		<keyword>snap</keyword>
		<keyword>tersoff</keyword>
		<keyword>tip4p/long</keyword>
		<keyword>zbl</keyword>
		<keyword>adp</keyword>
		<keyword>bop</keyword>
		<keyword>born/coul/wolf</keyword>
		<keyword>buck/coul/cut</keyword>
		<keyword>colloid</keyword>
		<keyword>coul/debye</keyword>
		<keyword>coul/streitz</keyword>
		<keyword>dsmc</keyword>
		<keyword>eim</keyword>
		<keyword>gran/hooke</keyword>
		<keyword>kim</keyword>
		<keyword>lj/charmm/coul/charmm/implicit</keyword>
		<keyword>lj/class2/coul/cut</keyword>
		<keyword>lj/cut/coul/debye</keyword>
		<keyword>lj/cut/dipole/cut</keyword>
		<keyword>lj/expand</keyword>
		<keyword>lj/long/dipole/long</keyword>
		<keyword>lj96/cut</keyword>
		<keyword>lubricateU/poly</keyword>
		<keyword>nb3b/harmonic</keyword>
		<keyword>peri/eps</keyword>
		<keyword>reax</keyword>
		<keyword>soft</keyword>
		<keyword>tersoff/mod</keyword>
		<keyword>tri/lj</keyword>
			<keyword>all</keyword>
			<keyword>creat</keyword>
			<keyword>mom</keyword>
			<keyword>rot</keyword>
			<keyword>dist</keyword>
			<keyword>dcd</keyword>
			<keyword>atomic</keyword>
			<keyword>sphere</keyword>
			<keyword>box</keyword>
			<keyword>in</keyword>
			<keyword>unwrap</keyword>
			<keyword>multi</keyword>
			<keyword>delta</keyword>
			<keyword>equal</keyword>
			<keyword>sum</keyword>
			<keyword>custom</keyword>
			<keyword>lj.*</keyword>
	</context>

    </include>
    </context>

  </definitions>
</language>

Hi, I am learning how to use with LAMMPS package. I run some examples given in the package, but it's difficult for me to identify the output files. Please I need your help.
Thank you.
Yusuf Tajuddeen Batsari

Hi, I am learning how to use with LAMMPS package. I run some examples given in the package, but it's difficult for me to identify the output files. Please I need your help.
Thank you.
Yusuf Tajuddeen Batsari

Hey, I'm a bit late but:
From when I was using it, there's a couple of log files, and most of the other output files come from assigning them in the script with fix/dump/restart commands. For visualization I used OVITO, and Matab for other data. Sorry I can't help you more but I would look at those commands and see what output files they are spitting out.

Thank you very much for sharing your experience with me. I am now able to smoothly run the examples and view output files. Thank You once again.

…

On Mon, 11 Jan 2021 4:38 AM Nanosmasher, ***@***.***> wrote: ***@***.**** commented on this gist. ------------------------------ Hi, I am learning how to use with LAMMPS package. I run some examples given in the package, but it's difficult for me to identify the output files. Please I need your help. Thank you. Yusuf Tajuddeen Batsari Hey, I'm a bit late but: From when I was using it, there's a couple of log files, and most of the other output files come from assigning them in the script with fix/dump/restart commands. For visualization I used OVITO, and Matab for other data. Sorry I can't help you more but I would look at those commands and see what output files they are spitting out. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <https://gist.github.com/b17250fb4adb2f645c93#gistcomment-3589146>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/APC46WWWETJ6QLXFEYKDMFLSZJXDNANCNFSM4UPLD2FA> .