Nathan Skene NathanSkene

## WelcomePack.md

      
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                NathanSkene
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              September 2, 2020 11:24
            
              
                Welcome pack for new starters
              
          
    Welcome to Imperial's Neurogenomics lab!

To-do:

Once you have Imperial login ID

Send me your username so I can give you access to the computing cluster and shared project spaces
Other important things to do


## NextFlowIntro.md

      
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                NathanSkene
                / NextFlowIntro.md
            
            
              Created
              February 18, 2020 17:47
            
              
                NextFlow tutorial
              
          
    What do we want to be able to do?


Run a basic nextflow script
Run an R script
Run the R script in parallel so that each one receives a different input argument
Run the process which calls the R script using a docker image
Push our script to github and run it from our github repos

Intro pages about NextFlow


## iRods data transfers.md

      
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              April 8, 2020 16:00
            
          
    i-Drops file transfer

Log in to hpc via terminal (replace username with your username)
shh username@login.cx1.hpc.ic.ac.uk

Fill in your password when prompted
Now we will go to the project folder and find a place we want to dump the files

  
## gist:5ee8a37ef603a937f90dad1e0af5c35e
╰─ swift $(brew --repo)/Library/Homebrew/cask/utils/quarantine.swift; echo $?                                 ─╯
/usr/local/include/module.modulemap:198:13: warning: umbrella directory 'xlocale' not found
   umbrella "xlocale"
            ^
/usr/local/include/module.modulemap:437:13: warning: umbrella directory '_types' not found
   umbrella "_types"
            ^
/usr/local/include/module.modulemap:522:14: warning: umbrella directory 'sys/_types' not found
    umbrella "sys/_types"
             ^

## elementaryos.md

      
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                NathanSkene
                / elementaryos.md
            
            
              Created
              May 13, 2021 23:29
                — forked from suberb/elementaryos.md
            
              
                elementaryOS | Things To Do After Installing Elementary OS Loki [Best OS For Switching From Windows & Mac]
              
          
    FIRST THING FIRST


 Update OS

sudo apt-get update && sudo apt-get upgrade
	╰─ swift $(brew --repo)/Library/Homebrew/cask/utils/quarantine.swift; echo $? ─╯
	/usr/local/include/module.modulemap:198:13: warning: umbrella directory 'xlocale' not found
	umbrella "xlocale"
	^
	/usr/local/include/module.modulemap:437:13: warning: umbrella directory '_types' not found
	umbrella "_types"
	^
	/usr/local/include/module.modulemap:522:14: warning: umbrella directory 'sys/_types' not found
	umbrella "sys/_types"
	^