vg index progress 8001-8256

vg-index-p.8001-8256.txt

$ vg index -p --edge-max 3 -k 11 -x nvc-debug.8001-8256.xg -g nvc-debug.8001-8256.gcsa nvc-debug.8001-8256.vg
Saving index to disk...
 loading graph                  [=====================================================================================================]100.0%
 processing kmers of nvc-debug. [=====================================================================================================]100.0%
InputGraph::InputGraph(): 504202 kmers in 1 file(s)
InputGraph::read(): Read 504202 11-mers from .vg-kmers-tmp-XXTYw8qM
InputGraph::readKeys(): 254968 unique keys
InputGraph::read(): Read 504202 11-mers from .vg-kmers-tmp-XXTYw8qM
InputGraph::readFrom(): 33488 unique from nodes
InputGraph::read(): Read 504202 11-mers from .vg-kmers-tmp-XXTYw8qM
PathGraph::PathGraph(): 504202 paths with 1008404 ranks
PathGraph::PathGraph(): 0.0 GB in 1 file(s)
GCSA::GCSA(): Preprocessing: 0.5 seconds, 0.1 GB
GCSA::GCSA(): Prefix-doubling from path length 11
GCSA::GCSA(): Step 1 (path length 11 -> 22)
PathGraph::prune(): 504202 -> 209477 paths (137572 ranges)
PathGraph::prune(): 109121 unique, 0 redundant, 100356 unsorted, 0 nondeterministic paths
PathGraph::prune(): 0.0 GB in 1 file(s)
PathGraph::read(): File 0: Read 209477 order-11 paths
PathGraph::extend(): File 0: Created 10241039 order-22 paths
PathGraph::read(): File 0: Read 10241039 order-22 paths
PathGraphBuilder::sort(): File 0: Sorted 10241039 paths
PathGraph::extend(): 209477 -> 10241039 paths (30613996 ranks)
PathGraph::extend(): 0.3 GB in 1 file(s)
GCSA::GCSA(): Step 2 (path length 22 -> 44)
PathGraph::prune(): 10241039 -> 7250391 paths (3072535 ranges)
PathGraph::prune(): 149203 unique, 0 redundant, 2619806 unsorted, 4481382 nondeterministic paths
PathGraph::prune(): 0.2 GB in 1 file(s)
PathGraph::read(): File 0: Read 7250391 order-22 paths
PathGraph::extend(): File 0: Created 194620575 order-44 paths
PathGraph::read(): File 0: Read 194620575 order-44 paths
PathGraphBuilder::sort(): File 0: Sorted 194620575 paths
PathGraph::extend(): 7250391 -> 194620575 paths (857882478 ranks)
PathGraph::extend(): 7.5 GB in 1 file(s)
GCSA::GCSA(): Step 3 (path length 44 -> 88)
PathGraph::prune(): 194620575 -> 194620575 paths (96469734 ranges)
PathGraph::prune(): 149203 unique, 0 redundant, 569592 unsorted, 193901780 nondeterministic paths
PathGraph::prune(): 7.5 GB in 1 file(s)
PathGraph::read(): File 0: Read 194620575 order-44 paths
PathGraphBuilder::write(): Size limit exceeded, construction aborted