Script checking the update sites and some repository #BIOP #Fiji

CheckJarsAndUpdateSites.groovy

/**
 * Simple script demoing how to check if an update site is enabled
 * and how to list all enabled update sites
 * 
 * @author Nicolas Chiaruttini
 * BIOP, EPFL, 2022
 **/ 

#@UpdateService updateService

// To check if an update site is enabled:

if (!updateService.getUpdateSite("Fiji-Legacy").isActive()) {
    println("Fiji-legacy is NOT enabled")
} else {
	println("Fiji-Legacy is enabled")
}

if (!updateService.getUpdateSite("PTBIOP").isActive()) {
    println("PTBIOP is NOT enabled")
} else {
	println("PTBIOP is enabled")
}

// Get the list of all update sites:

def Map<String, UpdateSite> sites = AvailableSites.getAvailableSites();

StringBuilder message = new StringBuilder();

message.append("------------------------\n")
message.append("Update sites enabled:\n")

sites.values().stream()
        .filter(site -> updateService.getUpdateSite(site.getName()).isActive())
        .forEach(site -> {
            message.append("\t"+site.getName()+"\t "+site.getURL()+"\n");
        });


message.append("-----\n");
message.append("OS and Dependencies Info\n");
message.append("OS "+ System.getProperty("os.name")+"\n");
message.append("ImageJ "+ VersionUtils.getVersion(ImageJ.class)+"\n");
message.append("IJ "+ VersionUtils.getVersion(IJ.class)+"\n");
message.append("BigWarp "+VersionUtils.getVersion(BigWarp.class)+"\n");
message.append("Bdv "+VersionUtils.getVersion(BigDataViewer.class)+"\n");
message.append("Bdv Vistools "+VersionUtils.getVersion(BdvHandle.class)+"\n");
message.append("Bdv Biop Tools "+VersionUtils.getVersion(Elastix2DSplineRegister.class)+"\n");
message.append("Bdv Playground "+VersionUtils.getVersion(SourceAndConverterServices.class)+"\n");
message.append("Bdv BioFormats "+VersionUtils.getVersion(BioFormatsMetaDataHelper.class)+"\n");
message.append("Biop Wrappers "+VersionUtils.getVersion(ElastixTask.class)+"\n");
message.append("Registration Server "+VersionUtils.getVersion(RemoteElastixTask.class)+"\n");
message.append("Bdv Playground Display "+VersionUtils.getVersion(BiopBdvSupplier.class)+"\n");

message.append("------------------------\n")


IJ.log(message.toString())

return ""

import net.imagej.updater.UpdateService
import net.imagej.updater.UpdateSite
import net.imagej.updater.util.AvailableSites

import bdv.BigDataViewer;
import bdv.util.BdvHandle;
import bigwarp.BigWarp;
import ch.epfl.biop.bdv.bioformats.BioFormatsMetaDataHelper;
import ch.epfl.biop.sourceandconverter.register.Elastix2DSplineRegister;
import ch.epfl.biop.wrappers.elastix.ElastixTask;
import ch.epfl.biop.wrappers.elastix.RemoteElastixTask;
import ij.IJ;
import net.imagej.ImageJ;
import net.imagej.updater.UpdateService;
import net.imagej.updater.UpdateSite;
import net.imagej.updater.util.AvailableSites;
import org.scijava.command.Command;
import org.scijava.platform.PlatformService;
import org.scijava.plugin.Parameter;
import org.scijava.plugin.Plugin;
import org.scijava.util.VersionUtils;
import sc.fiji.bdvpg.services.SourceAndConverterServices;
import sc.fiji.bdvpg.bdv.supplier.biop.BiopBdvSupplier;