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NikEfth/simset_for_stir.diff

Last active June 3, 2019 10:20
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Patch SimSET for STIR compatibility
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simset_for_stir.diff
Binary files 2.9.2_orig/.DS_Store and 2.9.2/.DS_Store differ
diff -ruN 2.9.2_orig/make.files/simset.make 2.9.2/make.files/simset.make
--- 2.9.2_orig/make.files/simset.make 2013-07-30 20:19:26.000000000 +0100
+++ 2.9.2/make.files/simset.make 2019-06-03 10:53:26.164586631 +0100
@@ -59,7 +59,7 @@
PHG_SRC_USR = $(SIMSET_PATH_USR)/src
OBJ_DIR = $(SIMSET_PATH_USR)/obj
PROGRAMS = $(SIMSET_PATH_USR)/bin
-
+LIB_DIR = $(SIMSET_PATH_USR)/lib
# Set OS Flags; all Unix systems should set GEN_UNIX.
# Choose one of the following for CFLAGS:
@@ -85,11 +85,11 @@
# WINNT
# Suggested compiler flags for Macintosh Unix (Darwin)
-OS_CFLAGS = -DDARWIN -g
+#OS_CFLAGS = -DDARWIN -g
# LINUX
# Suggested compiler flags for LINUX
-# OS_CFLAGS = -DGEN_UNIX -DLINUX
+OS_CFLAGS = -DGEN_UNIX -DLINUX -Wall -fPIC -g
COMPILER = cc
@@ -97,14 +97,15 @@
# Select the debug or nodebug CFLAGS option: debug has added data checking
# and is recommended
# Choose between the last two options instead if your compiler does not yet support -iquote
-CFLAGS = ${OS_CFLAGS} -c -DPHG_DEBUG -iquote"${PHG_SRC}" -DkSimSET_Path='"${SIMSET_PATH}"'
+# CFLAGS = ${OS_CFLAGS} -c -DPHG_DEBUG -iquote"${PHG_SRC}" -DkSimSET_Path='"${SIMSET_PATH}"'
# CFLAGS = ${OS_CFLAGS} -c -iquote"${PHG_SRC}" -DkSimSET_Path='"${SIMSET_PATH}"'
#
-# CFLAGS = ${OS_CFLAGS} -c -DPHG_DEBUG -I"${PHG_SRC}" -DkSimSET_Path='"${SIMSET_PATH}"'
+CFLAGS = ${OS_CFLAGS} -c -DPHG_DEBUG -I"${PHG_SRC}" -DkSimSET_Path='"${SIMSET_PATH}"'
# CFLAGS = ${OS_CFLAGS} -c -I"${PHG_SRC}" -DkSimSET_Path='"${SIMSET_PATH}"'
PROGRAM = ${PROGRAMS}/simset
+LIBRARY = ${LIB_DIR}/libsimset.so
MKFILE = ${MKFILES}/simset.make
@@ -230,11 +231,16 @@
# Linking instructions
-${PROGRAM}:: ${MKFILE} $(OBJECTS)
- echo linking
- ${COMPILER} -o ${PROGRAM} $(OBJECTS) -lm
+all : ${LIBRARY} ${PROGRAM}
+${LIBRARY}: ${MKFILE} $(OBJECTS)
+ echo linking
+ ${COMPILER} -shared -Wl,-soname,${LIBRARY} -o ${LIBRARY} $(OBJECTS)
+${PROGRAM}: ${MKFILE} $(OBJECTS)
+ echo linking
+ ${COMPILER} -o ${PROGRAM} $(OBJECTS) -lm
+
# Compiling instructions
diff -ruN 2.9.2_orig/.prepDistribution.sh 2.9.2/.prepDistribution.sh
--- 2.9.2_orig/.prepDistribution.sh 1970-01-01 01:00:00.000000000 +0100
+++ 2.9.2/.prepDistribution.sh 2013-10-26 22:12:39.000000000 +0100
@@ -0,0 +1,32 @@
+##################################################
+#
+#
+# This script clears the bin and obj
+# directories. It also clears results
+# out of the samples directory. This
+# reduces the size of the distribution
+# package and insures that users will
+# not accidentally run the results script
+# and compare the base results with
+# UW results instead of their own.
+#
+#
+##################################################
+
+cd bin
+rm *
+cd ..
+
+cd obj
+rm *
+cd ..
+
+cd samples/fastTest
+.clearResults.sh
+cd ../..
+
+cd samples/userFuncExamples
+.clearBinaries.sh
+.clearResults.sh
+cd ../..
+
diff -ruN 2.9.2_orig/src/bin.phg.c 2.9.2/src/bin.phg.c
--- 2.9.2_orig/src/bin.phg.c 2013-07-15 10:53:34.000000000 +0100
+++ 2.9.2/src/bin.phg.c 2019-03-30 16:57:08.522896562 +0000
@@ -96,85 +96,13 @@
*********************************************************************************/
#define PHG_BIN_MAIN /* Note we are substituting ourselves for phg's main */
-#include <stdio.h>
-#include <string.h>
-
-#include "SystemDependent.h"
-
-#include "LbTypes.h"
-#include "LbError.h"
-#include "LbDebug.h"
-#include "LbEnvironment.h"
-#include "LbFile.h"
-#include "LbMemory.h"
-#include "LbParamFile.h"
-#include "LbInterface.h"
-#include "LbHeader.h"
-
-#include "Photon.h"
-#include "PhgParams.h"
-#include "ColTypes.h"
-#include "ColParams.h"
-#include "DetTypes.h"
-#include "DetParams.h"
-#include "CylPos.h"
-#include "PhgMath.h"
-#include "PhoHFile.h"
-#include "PhgHdr.h"
-#include "ProdTbl.h"
-#include "PhoTrk.h"
-#include "SubObj.h"
-#include "EmisList.h"
-#include "Collimator.h"
-#include "Detector.h"
-#include "phg.h"
-#include "PhgBin.h"
+#include "bin.phg.h"
#ifdef MPW
#pragma segment PHG_BIN_MAIN
#endif
-/* LOCAL CONSTANTS */
-#define PHGRDHST_IsUsePHGHistory() LbFgIsSet(PhgOptions, LBFlag0) /* Will we use the PHG history file */
-#define PHGRDHST_IsUseColHistory() LbFgIsSet(PhgOptions, LBFlag1) /* Will we use the Collimator history file */
-#define PHGRDHST_IsUseDetHistory() LbFgIsSet(PhgOptions, LBFlag2) /* Will we use the Detector history file */
-
-#define PHGRDHST_NumFlags 3 /* Number of flags defined */
-
-/* LOCAL TYPES */
-typedef enum {Null, Decay, Photon} EventTy;
-
-/* LOCAL GLOBALS */
-static Boolean phgrdhstCanceled; /* Global cancelation flag */
-static CollimatedPhotonsTy phgrdhstColPhotons; /* These are the successfully collimated photons */
-static DetectedPhotonsTy phgrdhstDetPhotons; /* These are the successfully detected photons */
-static char phgrdhstErrStr[1024]; /* Error string storage */
-static LbUsFourByte phgrdhstNumToProc; /* Number of histories to process */
-static char phgrdhstHistName[1024]; /* Name of history file */
-static char phgrdhstHistParamsName[1024]; /* Name of history parameters file */
-static LbUsFourByte phgrdhstArgIndex;
-static ProdTblProdTblInfoTy phgrdhstPrdTblInfo; /* Info for initializing productivity table */
-static PhoHFileHdrTy phgrdhstHdrParams; /* Input header */
-
-/* PROTOTYPES */
-Boolean phgrdhstInitialize(int argc, char *argv[]);
-void phgrdhstTerminate(void);
-Boolean phgbin(int argc, char *argv[]);
-EventTy readEvent(FILE *historyFile,
- PHG_Decay *decayPtr,
- PHG_DetectedPhoton *photonPtr);
-EventTy oldReadEvent(FILE *historyFile,
- PHG_Decay *decayPtr,
- PHG_DetectedPhoton *photonPtr,
- Boolean isOldPhotons1,
- Boolean isOldPhotons2);
-Boolean phgrdhstStandard(char *argv[]);
-Boolean phgrdhstCustom(char *argv[]);
-void phgbinProcessPhotons(PhoHFileHkTy *histHk, PHG_Decay *decayPtr,
- PHG_TrackingPhoton *bluePhotons, LbUsFourByte numBlues,
- PHG_TrackingPhoton *pinkPhotons, LbUsFourByte numPinks);
-
/* FUNCTIONS */
/**********************
@@ -220,7 +148,7 @@
if ((phgrdhstArgIndex != 0) && (argv[phgrdhstArgIndex] != 0)) {
/* Get first param file and save number of param files to process */
- strcpy(PhgRunTimeParams.PhgParamFilePath,argv[phgrdhstArgIndex]);
+ strcpy(PhgRunTimeParams.PhgParamFilePath,argv[phgrdhstArgIndex]);
phgrdhstNumToProc = (argc - phgrdhstArgIndex);
}
else {
@@ -682,7 +610,8 @@
eventType = readEvent(historyFile, &nextDecay, &detectedPhoton);
}
- while ( eventType == Photon) {
+ while ( eventType == Photon)
+ {
/* Convert to a tracking photon */
{
diff -ruN 2.9.2_orig/src/bin.phg.h 2.9.2/src/bin.phg.h
--- 2.9.2_orig/src/bin.phg.h 1970-01-01 01:00:00.000000000 +0100
+++ 2.9.2/src/bin.phg.h 2019-03-28 16:48:00.601727849 +0000
@@ -0,0 +1,80 @@
+#ifndef BIN_PHG_HDR
+#define BIN_PHG_HDR
+
+#include <stdio.h>
+#include <string.h>
+
+#include "SystemDependent.h"
+
+#include "LbTypes.h"
+#include "LbError.h"
+#include "LbDebug.h"
+#include "LbEnvironment.h"
+#include "LbFile.h"
+#include "LbMemory.h"
+#include "LbParamFile.h"
+#include "LbInterface.h"
+#include "LbHeader.h"
+
+#include "Photon.h"
+#include "PhgParams.h"
+#include "ColTypes.h"
+#include "ColParams.h"
+#include "DetTypes.h"
+#include "DetParams.h"
+#include "CylPos.h"
+#include "PhgMath.h"
+#include "PhoHFile.h"
+#include "PhgHdr.h"
+#include "ProdTbl.h"
+#include "PhoTrk.h"
+#include "SubObj.h"
+#include "EmisList.h"
+#include "Collimator.h"
+#include "Detector.h"
+#include "phg.h"
+#include "PhgBin.h"
+
+/* LOCAL CONSTANTS */
+#define PHGRDHST_IsUsePHGHistory() LbFgIsSet(PhgOptions, LBFlag0) /* Will we use the PHG history file */
+#define PHGRDHST_IsUseColHistory() LbFgIsSet(PhgOptions, LBFlag1) /* Will we use the Collimator history file */
+#define PHGRDHST_IsUseDetHistory() LbFgIsSet(PhgOptions, LBFlag2) /* Will we use the Detector history file */
+
+#define PHGRDHST_NumFlags 3 /* Number of flags defined */
+
+/* LOCAL TYPES */
+typedef enum {Null, Decay, Photon} EventTy;
+
+/* LOCAL GLOBALS */
+static Boolean phgrdhstCanceled; /* Global cancelation flag */
+static CollimatedPhotonsTy phgrdhstColPhotons; /* These are the successfully collimated photons */
+static DetectedPhotonsTy phgrdhstDetPhotons; /* These are the successfully detected photons */
+static char phgrdhstErrStr[1024]; /* Error string storage */
+static LbUsFourByte phgrdhstNumToProc; /* Number of histories to process */
+static char phgrdhstHistName[1024]; /* Name of history file */
+static char phgrdhstHistParamsName[1024]; /* Name of history parameters file */
+static LbUsFourByte phgrdhstArgIndex;
+static ProdTblProdTblInfoTy phgrdhstPrdTblInfo; /* Info for initializing productivity table */
+static PhoHFileHdrTy phgrdhstHdrParams; /* Input header */
+
+/* PROTOTYPES */
+Boolean phgrdhstInitialize(int argc, char *argv[]);
+void phgrdhstTerminate(void);
+Boolean phgbin(int argc, char *argv[]);
+EventTy readEvent(FILE *historyFile,
+ PHG_Decay *decayPtr,
+ PHG_DetectedPhoton *photonPtr);
+EventTy oldReadEvent(FILE *historyFile,
+ PHG_Decay *decayPtr,
+ PHG_DetectedPhoton *photonPtr,
+ Boolean isOldPhotons1,
+ Boolean isOldPhotons2);
+Boolean phgrdhstStandard(char *argv[]);
+Boolean phgrdhstCustom(char *argv[]);
+void phgbinProcessPhotons(PhoHFileHkTy *histHk, PHG_Decay *decayPtr,
+ PHG_TrackingPhoton *bluePhotons, LbUsFourByte numBlues,
+ PHG_TrackingPhoton *pinkPhotons, LbUsFourByte numPinks);
+
+
+
+#endif
diff -ruN 2.9.2_orig/src/combine.hist.c 2.9.2/src/combine.hist.c
--- 2.9.2_orig/src/combine.hist.c 2013-07-15 10:53:34.000000000 +0100
+++ 2.9.2/src/combine.hist.c 2019-06-03 10:40:47.105344114 +0100
@@ -103,7 +103,7 @@
char *dataBuffPtr; /* Buffer for reading in data */
FILE *inputFile; /* Current input file */
FILE *outputFile; /* The output file */
- LbUsFourByte hdrSize; /* Size of the file's header */
+ LbUsFourByte hdrSize = 32768; /* Size of the file's header */
LbUsFourByte curFileIndex; /* Current file index */
LbUsFourByte numToProcess; /* Number of files to process */
LbUsFourByte numRead; /* Number of bytes read */
@@ -159,21 +159,21 @@
}
/* Open first input file */
- if ((inputFile = LbFlFileOpen(argv[curFileIndex], "rb")) == 0) {
- sprintf(errStr, "Unable to open input file\n'%s'.", argv[curFileIndex]);
- ErStFileError(errStr);
- break;
- }
+ if ((inputFile = LbFlFileOpen(argv[curFileIndex], "rb")) == 0) {
+ sprintf(errStr, "Unable to open input file\n'%s'.", argv[curFileIndex]);
+ ErStFileError(errStr);
+ break;
+ }
/* Read the header in the first input file */
- {
+ {
/* First, read the header size; it is in the first four bytes */
- if (fread(&hdrSize, sizeof(LbUsFourByte), 1, inputFile) != 1) {
- sprintf(errStr, "\nUnable to read header size from input file '%s'.\n",
- argv[curFileIndex]);
- ErStFileError(errStr);
- break;
- }
+// if (fread(&hdrSize, sizeof(LbUsFourByte), 1, inputFile) != 1) {
+// sprintf(errStr, "\nUnable to read header size from input file '%s'.\n",
+// argv[curFileIndex]);
+// ErStFileError(errStr);
+// break;
+// }
/* Verify we know how to deal with this */
if (hdrSize == sizeof(header)) {
@@ -191,21 +191,21 @@
}
/* Reset to zero and read in the header */
- if (fseek(inputFile, 0, SEEK_SET) != 0) {
- ErStFileError("\nUnable to reset to beginning of history file.");
- break;
- }
+ if (fseek(inputFile, 0, SEEK_SET) != 0) {
+ ErStFileError("\nUnable to reset to beginning of history file.");
+ break;
+ }
/* Read in the header */
- if (fread(hdrBuffPtr, hdrSize, 1, inputFile) != 1) {
- ErStFileError("\nUnable to read header from history file.");
- break;
- }
+ if (fread(hdrBuffPtr, hdrSize, 1, inputFile) != 1) {
+ ErStFileError("\nUnable to read header from history file.");
+ break;
+ }
/* Save the header */
if (updateHdr == true){
memcpy(&newHeader, &header, sizeof(header));
- }
+ }
}
@@ -268,10 +268,10 @@
break;
}
/* First, read the header size; it is in the first four bytes */
- if (fread(&hdrSize, sizeof(LbUsFourByte), 1, inputFile) != 1) {
- ErStFileError("\nUnable to read header size from input file.");
- break;
- }
+// if (fread(&hdrSize, sizeof(LbUsFourByte), 1, inputFile) != 1) {
+// ErStFileError("\nUnable to read header size from input file.");
+// break;
+// }
/* Allocate header buffer if unknown */
if (updateHdr == false) {
diff -ruN 2.9.2_orig/src/LbTypes.h 2.9.2/src/LbTypes.h
--- 2.9.2_orig/src/LbTypes.h 2014-01-24 16:26:37.000000000 +0000
+++ 2.9.2/src/LbTypes.h 2019-03-16 16:27:11.119406411 +0000
@@ -77,7 +77,7 @@
/* Define this value if your system has the file /usr/include/sys/types.h
(otherwise comment out the following line). */
-/* #define LB_TYPE_USE_SYS_INTS */
+#define LB_TYPE_USE_SYS_INTS
#include <float.h>
diff -ruN 2.9.2_orig/src/PhgParams.c 2.9.2/src/PhgParams.c
--- 2.9.2_orig/src/PhgParams.c 2013-07-25 02:36:01.000000000 +0100
+++ 2.9.2/src/PhgParams.c 2019-03-26 22:44:55.991673505 +0000
@@ -97,8 +97,6 @@
/* LOCAL GLOBALS */
static char phgBinErrString[512]; /* Storage for error string s*/
-static LbPfHkTy phgParamFileHk; /* Our parameter file */
-
/* When changing the following list also change PhgEn_RunTimeParamsTy in PhgParams.h.
The two lists must have the same order */
static labelTy phgRunTimeParamLabels[] = { /* The parameter labels */
diff -ruN 2.9.2_orig/src/PhgParams.h 2.9.2/src/PhgParams.h
--- 2.9.2_orig/src/PhgParams.h 2013-07-15 10:53:35.000000000 +0100
+++ 2.9.2/src/PhgParams.h 2019-03-26 22:45:11.478506154 +0000
@@ -606,6 +606,8 @@
*********************************************************************************/
#define PHGGetLengthOfScan() PhgRunTimeParams.Phg_LengthOfScan
+static LbPfHkTy phgParamFileHk; /* Our parameter file */
+
/* PROTOTYPES */
PhgEn_RunTimeParamsTy PhgLookupRunTimeParamLabel(char *label);
Boolean PhgGetRunTimeParams(void);
diff -ruN 2.9.2_orig/src/print.header.c 2.9.2/src/print.header.c
--- 2.9.2_orig/src/print.header.c 2013-07-25 02:35:00.000000000 +0100
+++ 2.9.2/src/print.header.c 2019-03-17 14:13:12.877848060 +0000
@@ -50,51 +50,9 @@
*
*********************************************************************************/
-#include <stdio.h>
-#include <string.h>
+#include "print.header.h"
-#include "SystemDependent.h"
-#include "LbTypes.h"
-#include "LbError.h"
-#include "LbDebug.h"
-#include "LbEnvironment.h"
-#include "LbFile.h"
-#include "LbMemory.h"
-#include "LbInterface.h"
-#include "LbParamFile.h"
-#include "LbHeader.h"
-
-#include "Photon.h"
-#include "PhgParams.h"
-#include "ColTypes.h"
-#include "ColParams.h"
-#include "DetTypes.h"
-#include "DetParams.h"
-#include "CylPos.h"
-#include "PhgMath.h"
-#include "PhoHFile.h"
-#include "ProdTbl.h"
-#include "PhoTrk.h"
-#include "SubObj.h"
-#include "EmisList.h"
-#include "Collimator.h"
-#include "Detector.h"
-#include "PhgHdr.h"
-#include "phg.h"
-#include "PhgBin.h"
-
-/* LOCAL CONSTANTS */
-
-/* LOCAL TYPES */
-
-/* LOCAL GLOBALS */
-static PhoHFileHdrTy header; /* The history file header */
-static LbHdrHkTy headerHk; /* The header hook */
-
-/* PROTOTYPES */
-Boolean PrintHeader(int argc, char *argv[]);
-static void display(PhoHFileHdrTy *headerPtr);
/* FUNCTIONS */
diff -ruN 2.9.2_orig/src/print.header.h 2.9.2/src/print.header.h
--- 2.9.2_orig/src/print.header.h 1970-01-01 01:00:00.000000000 +0100
+++ 2.9.2/src/print.header.h 2019-03-17 14:13:10.067802670 +0000
@@ -0,0 +1,52 @@
+#ifndef PRINT_HEADER
+#define PRINT_HEADER
+
+
+#include <stdio.h>
+#include <string.h>
+
+#include "SystemDependent.h"
+
+#include "LbTypes.h"
+#include "LbError.h"
+#include "LbDebug.h"
+#include "LbEnvironment.h"
+#include "LbFile.h"
+#include "LbMemory.h"
+#include "LbInterface.h"
+#include "LbParamFile.h"
+#include "LbHeader.h"
+
+#include "Photon.h"
+#include "PhgParams.h"
+#include "ColTypes.h"
+#include "ColParams.h"
+#include "DetTypes.h"
+#include "DetParams.h"
+#include "CylPos.h"
+#include "PhgMath.h"
+#include "PhoHFile.h"
+#include "ProdTbl.h"
+#include "PhoTrk.h"
+#include "SubObj.h"
+#include "EmisList.h"
+#include "Collimator.h"
+#include "Detector.h"
+#include "PhgHdr.h"
+#include "phg.h"
+#include "PhgBin.h"
+
+
+/* LOCAL CONSTANTS */
+
+/* LOCAL TYPES */
+
+/* LOCAL GLOBALS */
+static PhoHFileHdrTy header; /* The history file header */
+static LbHdrHkTy headerHk; /* The header hook */
+
+/* PROTOTYPES */
+Boolean PrintHeader(int argc, char *argv[]);
+static void display(PhoHFileHdrTy *headerPtr);
+
+#endif
diff -ruN 2.9.2_orig/src/SimSET.cflags 2.9.2/src/SimSET.cflags
--- 2.9.2_orig/src/SimSET.cflags 1970-01-01 01:00:00.000000000 +0100
+++ 2.9.2/src/SimSET.cflags 2019-06-02 23:53:31.541319043 +0100
@@ -0,0 +1 @@
+-std=c17
\ No newline at end of file
diff -ruN 2.9.2_orig/src/SimSET.config 2.9.2/src/SimSET.config
--- 2.9.2_orig/src/SimSET.config 1970-01-01 01:00:00.000000000 +0100
+++ 2.9.2/src/SimSET.config 2019-04-03 13:04:47.740633671 +0100
@@ -0,0 +1,2 @@
+// Add predefined macros for your project here. For example:
+// #define THE_ANSWER 42
diff -ruN 2.9.2_orig/src/SimSET.creator 2.9.2/src/SimSET.creator
--- 2.9.2_orig/src/SimSET.creator 1970-01-01 01:00:00.000000000 +0100
+++ 2.9.2/src/SimSET.creator 2019-04-03 13:04:47.740633671 +0100
@@ -0,0 +1 @@
+[General]
diff -ruN 2.9.2_orig/src/simset.creator.user 2.9.2/src/simset.creator.user
--- 2.9.2_orig/src/simset.creator.user 1970-01-01 01:00:00.000000000 +0100
+++ 2.9.2/src/simset.creator.user 2019-04-02 15:20:35.749145777 +0100
@@ -0,0 +1,258 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE QtCreatorProject>
+<!-- Written by QtCreator 4.8.2, 2019-04-02T15:20:35. -->
+<qtcreator>
+ <data>
+ <variable>EnvironmentId</variable>
+ <value type="QByteArray">{c62e0ab5-e250-4d63-8bd6-413f8f0df425}</value>
+ </data>
+ <data>
+ <variable>ProjectExplorer.Project.ActiveTarget</variable>
+ <value type="int">0</value>
+ </data>
+ <data>
+ <variable>ProjectExplorer.Project.EditorSettings</variable>
+ <valuemap type="QVariantMap">
+ <value type="bool" key="EditorConfiguration.AutoIndent">true</value>
+ <value type="bool" key="EditorConfiguration.AutoSpacesForTabs">false</value>
+ <value type="bool" key="EditorConfiguration.CamelCaseNavigation">true</value>
+ <valuemap type="QVariantMap" key="EditorConfiguration.CodeStyle.0">
+ <value type="QString" key="language">Cpp</value>
+ <valuemap type="QVariantMap" key="value">
+ <value type="QByteArray" key="CurrentPreferences">CppGlobal</value>
+ </valuemap>
+ </valuemap>
+ <valuemap type="QVariantMap" key="EditorConfiguration.CodeStyle.1">
+ <value type="QString" key="language">QmlJS</value>
+ <valuemap type="QVariantMap" key="value">
+ <value type="QByteArray" key="CurrentPreferences">QmlJSGlobal</value>
+ </valuemap>
+ </valuemap>
+ <value type="int" key="EditorConfiguration.CodeStyle.Count">2</value>
+ <value type="QByteArray" key="EditorConfiguration.Codec">UTF-8</value>
+ <value type="bool" key="EditorConfiguration.ConstrainTooltips">false</value>
+ <value type="int" key="EditorConfiguration.IndentSize">4</value>
+ <value type="bool" key="EditorConfiguration.KeyboardTooltips">false</value>
+ <value type="int" key="EditorConfiguration.MarginColumn">80</value>
+ <value type="bool" key="EditorConfiguration.MouseHiding">true</value>
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diff -ruN 2.9.2_orig/src/SimSET.creator.user 2.9.2/src/SimSET.creator.user
--- 2.9.2_orig/src/SimSET.creator.user 1970-01-01 01:00:00.000000000 +0100
+++ 2.9.2/src/SimSET.creator.user 2019-06-03 10:39:33.415825090 +0100
@@ -0,0 +1,345 @@
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+ <value type="bool" key="Analyzer.Valgrind.Settings.UseGlobalSettings">true</value>
+ <value type="bool" key="Analyzer.Valgrind.ShowReachable">false</value>
+ <value type="bool" key="Analyzer.Valgrind.TrackOrigins">true</value>
+ <value type="QString" key="Analyzer.Valgrind.ValgrindExecutable">valgrind</value>
+ <valuelist type="QVariantList" key="Analyzer.Valgrind.VisibleErrorKinds">
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+ <value type="int" key="PE.EnvironmentAspect.Base">2</value>
+ <valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
+ <value type="QString" key="ProjectExplorer.CustomExecutableRunConfiguration.Executable">/home/nikos/Workspace/src/2.9.2/bin/printheader</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Custom Executable</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName">PrintHeader</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.CustomExecutableRunConfiguration</value>
+ <value type="QString" key="RunConfiguration.Arguments">my_history.lm</value>
+ <value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
+ <value type="bool" key="RunConfiguration.UseCppDebugger">false</value>
+ <value type="bool" key="RunConfiguration.UseCppDebuggerAuto">true</value>
+ <value type="bool" key="RunConfiguration.UseMultiProcess">false</value>
+ <value type="bool" key="RunConfiguration.UseQmlDebugger">false</value>
+ <value type="bool" key="RunConfiguration.UseQmlDebuggerAuto">true</value>
+ <value type="bool" key="RunConfiguration.UseTerminal">true</value>
+ <value type="QString" key="RunConfiguration.WorkingDirectory">/home/nikos/Workspace/brainviset_simset/Results/fast_Test/Siemens_mCT/Projections/Iteration1/initialParams_Nikos1/</value>
+ <value type="QString" key="RunConfiguration.WorkingDirectory.default"></value>
+ </valuemap>
+ <valuemap type="QVariantMap" key="ProjectExplorer.Target.RunConfiguration.1">
+ <value type="bool" key="Analyzer.QmlProfiler.AggregateTraces">false</value>
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+ <value type="QString" key="Analyzer.QmlProfiler.LastTraceFile"></value>
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+ </valuelist>
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+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName">BinHistoryFile</value>
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+ <value type="QString" key="RunConfiguration.WorkingDirectory.default"></value>
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+ <value type="int" key="ProjectExplorer.Target.RunConfigurationCount">2</value>
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+ </data>
+ <data>
+ <variable>ProjectExplorer.Project.TargetCount</variable>
+ <value type="int">1</value>
+ </data>
+ <data>
+ <variable>ProjectExplorer.Project.Updater.FileVersion</variable>
+ <value type="int">20</value>
+ </data>
+ <data>
+ <variable>Version</variable>
+ <value type="int">20</value>
+ </data>
+</qtcreator>
diff -ruN 2.9.2_orig/src/SimSET.cxxflags 2.9.2/src/SimSET.cxxflags
--- 2.9.2_orig/src/SimSET.cxxflags 1970-01-01 01:00:00.000000000 +0100
+++ 2.9.2/src/SimSET.cxxflags 2019-06-02 23:53:31.531319263 +0100
@@ -0,0 +1 @@
+-std=c++17
\ No newline at end of file
diff -ruN 2.9.2_orig/src/SimSET.files 2.9.2/src/SimSET.files
--- 2.9.2_orig/src/SimSET.files 1970-01-01 01:00:00.000000000 +0100
+++ 2.9.2/src/SimSET.files 2019-04-03 13:04:47.733966960 +0100
@@ -0,0 +1,122 @@
+ColParams.c
+ColParams.h
+ColSlat.c
+ColSlat.h
+ColTypes.h
+ColUsr.c
+ColUsr.h
+Collimator.c
+Collimator.h
+CylPos.c
+CylPos.h
+DetBlock.c
+DetBlock.h
+DetCylinder.c
+DetCylinder.h
+DetGeometric.c
+DetGeometric.h
+DetParams.c
+DetParams.h
+DetPlanar.c
+DetPlanar.h
+DetTypes.h
+DetUsr.c
+DetUsr.h
+Detector.c
+Detector.h
+EmisList.c
+EmisList.h
+Lb2DGeometry.c
+Lb2DGeometry.h
+LbConvert.c
+LbConvert.h
+LbDebug.c
+LbDebug.h
+LbEnvironment.c
+LbEnvironment.h
+LbError.c
+LbError.h
+LbFile.c
+LbFile.h
+LbHeader.c
+LbHeader.h
+LbInterface.c
+LbInterface.h
+LbMacros.h
+LbMath.h
+LbMemory.c
+LbMemory.h
+LbParamFile.c
+LbParamFile.h
+LbSort.c
+LbSort.h
+LbTiming.c
+LbTiming.h
+LbTypes.h
+MT19937.c
+MT19937.h
+PhgBin.c
+PhgBin.h
+PhgHdr.c
+PhgHdr.h
+PhgIsotopes.c
+PhgIsotopes.h
+PhgMath.c
+PhgMath.h
+PhgParams.c
+PhgParams.h
+PhgUsrBin.c
+PhgUsrBin.h
+PhoHFile.c
+PhoHFile.h
+PhoHStat.c
+PhoHStat.h
+PhoTrk.c
+PhoTrk.h
+Photon.h
+ProdTbl.c
+ProdTbl.h
+SubObj.c
+SubObj.h
+SystemDependent.h
+UNCCollimator.c
+UNCCollimator.h
+addrandUsr.c
+addrandUsr.h
+addrandoms.c
+addrandoms.h
+atten.correct.c
+bcomp.c
+bin.phg.c
+bin.phg.h
+breakpoint.swap.c
+build_att.c
+build_coh.c
+calc.attenuation.c
+calc.attenuation.h
+collapse.c
+collapse3d.c
+combine.bin.c
+combine.hist.c
+convert.c
+convert.coh.c
+convert.header.c
+display.header.c
+extract.c
+extract.lines.c
+line3d.c
+makeindexfile.c
+migrate.c
+phg.c
+phg.h
+phg.swap.c
+print.header.c
+print.header.h
+reorder.c
+resampledecaytime.c
+reverse.bytes.c
+scale.c
+simset.c
+strip.header.c
+timesort.c
+ttest.c
diff -ruN 2.9.2_orig/src/SimSET.includes 2.9.2/src/SimSET.includes
--- 2.9.2_orig/src/SimSET.includes 1970-01-01 01:00:00.000000000 +0100
+++ 2.9.2/src/SimSET.includes 2019-04-03 13:04:47.737300316 +0100
@@ -0,0 +1 @@
+.
@NikEfth
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NikEfth commented Jun 3, 2019

Rev. 4 fixes the history file combining. The problem was that it seems as the size of the header files is not written in the first 4 bytes anymore.

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