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Niknafs/Expands-Installation.md

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Installing rJava in ubuntu (docker)
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Expands-Installation.md

Start a docker with correct working directory mounted

docker run -d --name expands -i -t -v xxx:xxx ubuntu:14.04 bash

Install the requirements in the container

docker attach expands
# apt-get update
# apt-get install emacs
# apt-get install r-base
# apt-get install openjdk-7-jdk

Installing rJava:

R CMD javareconf

From inside R:

> install.packages('rJava') --> select mirror 139. Surprisingly, not all mirrors worked.

install ape dependency:

apt-get install wget
wget https://cran.r-project.org/src/contrib/Archive/ape/ape_3.2.tar.gz
install.packages('ape_3.2.tar.gz', repos = NULL, type = "source")

finally install expands

install.packages('expands') # --> selected mirror 129
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