Omnistic

import tifffile as tiff
from bioio import BioImage

img = BioImage("your_czi_file_path_here")

destination = "destination_folder_for_tiffs"

for scene_id, scene in enumerate(img.scenes):
    img.set_scene(scene)
    

Omnistic

import os


# Path to {Documents}\Zemax\Glasscat
path = r'C:\Users\David Nguyen\Documents\Zemax\Glasscat'

# Initialize return array, which will contain the glass names and vendors
allglass = []

# Dispersion formula flag

Omnistic

import os


# Path to {Documents}\Zemax\Glasscat
path = r'C:\Users\David Nguyen\Documents\Zemax\Glasscat'

# Initialize return array, which will contain the glass names and vendors
allglass = []

# Loop over the files in the GLASSCAT folder

Omnistic

# Imports
import numpy as np
import matplotlib.pyplot as plt 

# Initializations
legend = []

spha = []
coma = []
asti = []

Omnistic

path = getDirectory("Choose a Directory");
filename = getFileList(path);
newDir = path + "Max Projections" + File.separator;
if (File.exists(newDir))
   exit("Destination directory already exists; remove it and then run this macro again");
File.makeDirectory(newDir);
for (i=0; i<filename.length; i++) {
        if(endsWith(filename[i], ".stack")) {
                run("Raw...", "open=["+path+filename[i]+"] image=[16-bit Unsigned] width=1024 height=624 number=20000 little-endian");      
                //run("Z Project...", "projection=[Max Intensity]");

Omnistic

# Modules
import os

# Open the tolerancing tool
MyTol = TheSystem.Tools.OpenTolerancing()

# Set criterion to MF value
MyTol.Criterion = ZOSAPI.Tools.Tolerancing.Criterions.MeritFunction

# Perform a single run iteratively

Omnistic

surface = 0 # Saved ending surface
wavelength = 0 # Saved wavelength
field = 0 # Saved field
data = 0 # Total fiber coupling

# Retrieve the value of a POPD operand without going into the LDE
Total_fiber_coupling = TheSystem.MFE.GetOperandValue(ZOSAPI.Editors.MFE.MeritOperandType.POPD,
                                                     surface, wavelength, field, data, 0, 0, 0, 0)

# Print the value

Omnistic

# Create a RayTrace analysis
MyRayTrace = TheSystem.Analyses.New_RayTrace()

# Check the settings implementation status of this analysis feature in the ZOSAPI
print('Does RayTrace have fully-implemented settings?', MyRayTrace.HasAnalysisSpecificSettings)

# Retrieve the settings
MyRayTraceSettings = MyRayTrace.GetSettings()

# Define the settings (or the ray to be traced)

Omnistic

from System import Enum, Int32, Double

# Open the BatchRayTrace tool
MyBatchRT = TheSystem.Tools.OpenBatchRayTrace()

# Add an unpolarized-raytrace
ToImageSurface = 3
MaxRays = 1

MyUnpolRT = MyBatchRT.CreateNormUnpol(MaxRays, ZOSAPI.Tools.RayTrace.RaysType.Real, ToImageSurface)

Omnistic

# Modules
import matplotlib.pyplot as plt

# Definition from Standalone application
def reshape(data, x, y, transpose = False):
  """Converts a System.Double[,] to a 2D list for plotting or post processing

  Parameters
  ----------
  data      : System.Double[,] data directly from ZOS-API