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polygonizer <- function(x, outshape=NULL, gdalformat = 'ESRI Shapefile',
pypath=NULL, readpoly=TRUE, quietish=TRUE) {
# x: an R Raster layer, or the file path to a raster file recognised by GDAL
# outshape: the path to the output shapefile (if NULL, a temporary file will be created)
# gdalformat: the desired OGR vector format
# pypath: the path to (if NULL, an attempt will be made to determine the location
# readpoly: should the polygon shapefile be read back into R, and returned by this function? (logical)
# quietish: should (some) messages be suppressed? (logical)
if (isTRUE(readpoly)) require(rgdal)
if (is.null(pypath)) {
pypath <- Sys.which('')
## The line below has been commented:
# if (!file.exists(pypath)) stop("Can't find on your system.")
owd <- getwd()
if (!is.null(outshape)) {
outshape <- sub('\\.shp$', '', outshape)
f.exists <- file.exists(paste(outshape, c('shp', 'shx', 'dbf'), sep='.'))
if (any(f.exists))
stop(sprintf('File already exists: %s',
toString(paste(outshape, c('shp', 'shx', 'dbf'),
sep='.')[f.exists])), call.=FALSE)
} else outshape <- tempfile()
if (is(x, 'Raster')) {
writeRaster(x, {f <- tempfile(fileext='.asc')})
rastpath <- normalizePath(f)
} else if (is.character(x)) {
rastpath <- normalizePath(x)
} else stop('x must be a file path (character string), or a Raster object.')
## Now 'python' has to be substituted by OSGeo4W
args=(sprintf('"%1$s" "%2$s" -f "%3$s" "%4$s.shp"',
pypath, rastpath, gdalformat, outshape)))
if (isTRUE(readpoly)) {
shp <- readOGR(dirname(outshape), layer = basename(outshape), verbose=!quietish)

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birbritto commented Nov 27, 2018

I'm getting this error despite putting in a formal raster layer as 'x':

"x must be a file path (character string), or a Raster object."

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