SGE script

gen_scripts.py

# Generate shell scripts for SGE.

def create_script(id, x, s, r, c, jpc):
    f = open("job%(id_)d.sh" % {'id_' : id}, 'w')
    f.write("#---------------------------Start program.job------------------------\n" \
            "#!/bin/bash\n" \
            "\n" \
            "# The name of the job, can be whatever makes sense to you\n" \
            "#$ -N phdp-c%(c_)dr%(r_).2f\n" \
            "\n" \
            "# Redirect output stream to this file.\n" \
            "#$ -o phdp-c%(c_)dr%(r_).2f.txt\n" \
            "\n" \
            "# Redirect error stream to this file.\n" \
            "#$ -e sge_error-c%(c_)dr%(r_).2f.txt\n" \
            "\n" \
            "# The batchsystem should use the current directory as working directory.\n" \
            "# Both files (output.dat and error.dat) will be placed in the current\n" \
            "# directory. The batchsystem assumes to find the executable in this directory.\n" \
            "#$ -cwd\n" \
            "\n" \
            "# This is the file to be executed.\n" \
            "./ssne -x=%(x_)d -r=%(r_).2f -s=%(s_).2f -c=%(c_)d -jpc=%(jpc_)d -o=c%(c_)dr%(r_).2f-\n" \
            "\n#---------------------------End program.sge------------------------\n"
            % {'x_' : x, "r_" : r, "s_" : s, "c_" : c, "jpc_" : jpc})
    f.close()

sim_id = 0
for v0 in range(1, 4):
    r = 0.25 * v0
    for c in [5, 10, 25, 50, 125]:
        create_script(sim_id, 32, 0.15, r, c, 100000 / c)
        sim_id += 1

f = open("run.sh", 'w')
f.write("#---------------------------Start script------------------------\n" \
        "#!/bin/bash\n" \
        "\n" \
        "# The SGE jobs to be executed.\n" \
        "for (( i = 0 ; i < %(sim)d; ++i ))\n" \
        "do\n" \
        "qsub job$i.sh\n" \
        "done\n" \
        "\n#---------------------------End script------------------------\n"
        % {"sim" : sim_id})
f.close()