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RamRS/R-steps Secret

Created Jul 13, 2019
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R steps
> .libPaths()
[1] "/Users/ram/miniconda3/envs/conda-r-test/lib/R/library"
> install.packages(tidyverse)
also installing the dependencies ‘colorspace’, ‘sys’, ‘ps’, ‘highr’, ‘markdown’, ‘plyr’, ‘labeling’, ‘munsell’, ‘RColorBrewer’, ‘zeallot’, ‘askpass’, ‘rematch’, ‘prettyunits’, ‘processx’, ‘knitr’, ‘yaml’, ‘htmltools’, ‘evaluate’, ‘base64enc’, ‘tinytex’, ‘xfun’, ‘utf8’, ‘backports’, ‘generics’, ‘reshape2’, ‘assertthat’, ‘glue’, ‘pkgconfig’, ‘R6’, ‘Rcpp’, ‘tidyselect’, ‘BH’, ‘plogr’, ‘DBI’, ‘ellipsis’, ‘digest’, ‘gtable’, ‘lazyeval’, ‘scales’, ‘viridisLite’, ‘withr’, ‘vctrs’, ‘curl’, ‘mime’, ‘openssl’, ‘clipr’, ‘cellranger’, ‘progress’, ‘callr’, ‘fs’, ‘rmarkdown’, ‘whisker’, ‘selectr’, ‘stringi’, ‘fansi’, ‘pillar’, ‘broom’, ‘cli’, ‘crayon’, ‘dplyr’, ‘dbplyr’, ‘forcats’, ‘ggplot2’, ‘haven’, ‘hms’, ‘httr’, ‘jsonlite’, ‘lubridate’, ‘magrittr’, ‘modelr’, ‘purrr’, ‘readr’, ‘readxl’, ‘reprex’, ‘rlang’, ‘rstudioapi’, ‘rvest’, ‘stringr’, ‘tibble’, ‘tidyr’, ‘xml2’
..
messages about downloading packages
..
* installing *source* package ‘utf8’ ...
** package ‘utf8’ successfully unpacked and MD5 sums checked
** libs
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c as_utf8.c -o as_utf8.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c bytes.c -o bytes.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c context.c -o context.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c init.c -o init.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c render.c -o render.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c render_table.c -o render_table.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c string.c -o string.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c text.c -o text.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8_encode.c -o utf8_encode.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8_format.c -o utf8_format.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8_normalize.c -o utf8_normalize.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8_valid.c -o utf8_valid.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8_width.c -o utf8_width.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c util.c -o util.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/array.c -o utf8lite/src/array.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/char.c -o utf8lite/src/char.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/encode.c -o utf8lite/src/encode.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/error.c -o utf8lite/src/error.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/escape.c -o utf8lite/src/escape.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/graph.c -o utf8lite/src/graph.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/render.c -o utf8lite/src/render.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/text.c -o utf8lite/src/text.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I/Users/ram/miniconda3/envs/conda-r-test/include -Iutf8lite/src -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o
ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Users/ram/miniconda3/envs/conda-r-test/lib/R/lib -Wl,-dead_strip_dylibs -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ -Wl,-rpath,/Users/ram/miniconda3/envs/conda-r-test/lib -L/Users/ram/miniconda3/envs/conda-r-test/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/Users/ram/miniconda3/envs/conda-r-test/lib/R/lib -lR -Wl,-framework -Wl,CoreFoundation
ld: warning: ignoring file ./libcutf8lite.a, file was built for archive which is not the architecture being linked (x86_64): ./libcutf8lite.a
installing to /Users/ram/miniconda3/envs/conda-r-test/lib/R/library/utf8/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error: package or namespace load failed for ‘utf8’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/utf8/libs/utf8.so':
dlopen(/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/utf8/libs/utf8.so, 6): Symbol not found: _utf8lite_graph_measure
Referenced from: /Users/ram/miniconda3/envs/conda-r-test/lib/R/library/utf8/libs/utf8.so
Expected in: flat namespace
in /Users/ram/miniconda3/envs/conda-r-test/lib/R/library/utf8/libs/utf8.so
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/utf8’
...
...
* installing *source* package ‘jsonlite’ ...
** package ‘jsonlite’ successfully unpacked and MD5 sums checked
** libs
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c base64.c -o base64.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c collapse_array.c -o collapse_array.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c collapse_object.c -o collapse_object.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c collapse_pretty.c -o collapse_pretty.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c escape_chars.c -o escape_chars.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c integer64_to_na.c -o integer64_to_na.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c is_datelist.c -o is_datelist.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c is_recordlist.c -o is_recordlist.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c is_scalarlist.c -o is_scalarlist.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c modp_numtoa.c -o modp_numtoa.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c null_to_na.c -o null_to_na.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c num_to_char.c -o num_to_char.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c parse.c -o parse.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c prettify.c -o prettify.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c push_parser.c -o push_parser.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c r-base64.c -o r-base64.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c register.c -o register.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c row_collapse.c -o row_collapse.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c transpose_list.c -o transpose_list.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c validate.c -o validate.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c yajl/yajl.c -o yajl/yajl.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c yajl/yajl_buf.c -o yajl/yajl_buf.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c yajl/yajl_encode.c -o yajl/yajl_encode.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c yajl/yajl_gen.c -o yajl/yajl_gen.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c yajl/yajl_lex.c -o yajl/yajl_lex.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c yajl/yajl_parser.c -o yajl/yajl_parser.o
clang -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -Iyajl/api -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -m64 -fPIC -c yajl/yajl_tree.c -o yajl/yajl_tree.o
ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Users/ram/miniconda3/envs/conda-r-test/lib/R/lib -Wl,-dead_strip_dylibs -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ -Wl,-rpath,/Users/ram/miniconda3/envs/conda-r-test/lib -L/Users/ram/miniconda3/envs/conda-r-test/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/Users/ram/miniconda3/envs/conda-r-test/lib/R/lib -lR -Wl,-framework -Wl,CoreFoundation
ld: warning: ignoring file yajl/libstatyajl.a, file was built for archive which is not the architecture being linked (x86_64): yajl/libstatyajl.a
installing to /Users/ram/miniconda3/envs/conda-r-test/lib/R/library/jsonlite/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error: package or namespace load failed for ‘jsonlite’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/jsonlite/libs/jsonlite.so':
dlopen(/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/jsonlite/libs/jsonlite.so, 6): Symbol not found: _push_parser_get
Referenced from: /Users/ram/miniconda3/envs/conda-r-test/lib/R/library/jsonlite/libs/jsonlite.so
Expected in: flat namespace
in /Users/ram/miniconda3/envs/conda-r-test/lib/R/library/jsonlite/libs/jsonlite.so
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/jsonlite’
...
...
* installing *source* package ‘fs’ ...
** package ‘fs’ successfully unpacked and MD5 sums checked
** libs
clang++ -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/Rcpp/include" -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -fPIC -c error.cc -o error.o
clang++ -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/Rcpp/include" -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -fPIC -c dir.cc -o dir.o
clang++ -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/Rcpp/include" -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -fPIC -c utils.cc -o utils.o
clang++ -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/Rcpp/include" -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -fPIC -c link.cc -o link.o
clang++ -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/Rcpp/include" -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -fPIC -c path.cc -o path.o
clang++ -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/Rcpp/include" -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -fPIC -c file.cc -o file.o
clang++ -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/Rcpp/include" -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -fPIC -c fs.cc -o fs.o
clang++ -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/Rcpp/include" -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -fPIC -c id.cc -o id.o
clang++ -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/Rcpp/include" -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -fPIC -c unix/getmode.cc -o unix/getmode.o
clang++ -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/Rcpp/include" -I/Users/ram/miniconda3/envs/conda-r-test/include -fPIC -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -fPIC -c RcppExports.cpp -o RcppExports.o
cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4
(cd libuv \
&& touch aclocal.m4 \
&& touch -r aclocal.m4 configure Makefile.in \
&& CC="clang" CFLAGS="-mmacosx-version-min=10.9 -m64 -fPIC -fPIC " AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-dead_strip_dylibs -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ -Wl,-rpath,/Users/ram/miniconda3/envs/conda-r-test/lib -L/Users/ram/miniconda3/envs/conda-r-test/lib" ./configure --quiet)
make --directory=libuv \
HAVE_DTRACE=0
make[1]: Entering directory '/private/var/folders/sm/8hlrh2655g7bycnj4lc7zcvm0000gn/T/RtmpBhHb7Z/R.INSTALL5cca7e012274/fs/src/libuv'
CC src/libuv_la-fs-poll.lo
CC src/libuv_la-inet.lo
CC src/libuv_la-threadpool.lo
CC src/libuv_la-uv-common.lo
CC src/libuv_la-version.lo
CC src/unix/libuv_la-async.lo
CC src/unix/libuv_la-core.lo
CC src/unix/libuv_la-dl.lo
CC src/unix/libuv_la-fs.lo
CC src/unix/libuv_la-getaddrinfo.lo
CC src/unix/libuv_la-getnameinfo.lo
CC src/unix/libuv_la-loop-watcher.lo
CC src/unix/libuv_la-loop.lo
CC src/unix/libuv_la-pipe.lo
CC src/unix/libuv_la-poll.lo
CC src/unix/libuv_la-process.lo
CC src/unix/libuv_la-signal.lo
CC src/unix/libuv_la-stream.lo
CC src/unix/libuv_la-tcp.lo
CC src/unix/libuv_la-thread.lo
CC src/unix/libuv_la-timer.lo
CC src/unix/libuv_la-tty.lo
CC src/unix/libuv_la-udp.lo
CC src/unix/libuv_la-bsd-ifaddrs.lo
CC src/unix/libuv_la-darwin.lo
CC src/unix/libuv_la-darwin-proctitle.lo
CC src/unix/libuv_la-fsevents.lo
CC src/unix/libuv_la-kqueue.lo
CC src/unix/libuv_la-proctitle.lo
CCLD libuv.la
ar: `u' modifier ignored since `D' is the default (see `U')
make[1]: Leaving directory '/private/var/folders/sm/8hlrh2655g7bycnj4lc7zcvm0000gn/T/RtmpBhHb7Z/R.INSTALL5cca7e012274/fs/src/libuv'
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Users/ram/miniconda3/envs/conda-r-test/lib/R/lib -Wl,-dead_strip_dylibs -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ -Wl,-rpath,/Users/ram/miniconda3/envs/conda-r-test/lib -L/Users/ram/miniconda3/envs/conda-r-test/lib -o fs.so error.o dir.o utils.o link.o path.o file.o fs.o id.o unix/getmode.o RcppExports.o ./libuv/.libs/libuv.a -pthread -L/Users/ram/miniconda3/envs/conda-r-test/lib/R/lib -lR -Wl,-framework -Wl,CoreFoundation
ld: warning: ignoring file ./libuv/.libs/libuv.a, file was built for archive which is not the architecture being linked (x86_64): ./libuv/.libs/libuv.a
installing to /Users/ram/miniconda3/envs/conda-r-test/lib/R/library/fs/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error: package or namespace load failed for ‘fs’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/fs/libs/fs.so':
dlopen(/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/fs/libs/fs.so, 6): Symbol not found: _uv_default_loop
Referenced from: /Users/ram/miniconda3/envs/conda-r-test/lib/R/library/fs/libs/fs.so
Expected in: flat namespace
in /Users/ram/miniconda3/envs/conda-r-test/lib/R/library/fs/libs/fs.so
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/fs’
...
...
ERROR: dependencies ‘fs’, ‘rmarkdown’ are not available for package ‘reprex’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/reprex’
ERROR: dependency ‘httr’ is not available for package ‘rvest’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/rvest’
ERROR: dependency ‘pillar’ is not available for package ‘tibble’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/tibble’
ERROR: dependency ‘tibble’ is not available for package ‘cellranger’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/cellranger’
ERROR: dependency ‘tibble’ is not available for package ‘dplyr’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/dplyr’
ERROR: dependency ‘tibble’ is not available for package ‘forcats’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/forcats’
ERROR: dependency ‘tibble’ is not available for package ‘ggplot2’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/ggplot2’
ERROR: dependency ‘tibble’ is not available for package ‘readr’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/readr’
ERROR: dependencies ‘dplyr’, ‘tibble’ are not available for package ‘dbplyr’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/dbplyr’
ERROR: dependencies ‘forcats’, ‘readr’, ‘tibble’ are not available for package ‘haven’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/haven’
ERROR: dependencies ‘cellranger’, ‘tibble’ are not available for package ‘readxl’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/readxl’
ERROR: dependencies ‘dplyr’, ‘tibble’ are not available for package ‘tidyr’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/tidyr’
ERROR: dependencies ‘dplyr’, ‘tibble’, ‘tidyr’ are not available for package ‘broom’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/broom’
ERROR: dependencies ‘broom’, ‘dplyr’, ‘tibble’, ‘tidyr’ are not available for package ‘modelr’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/modelr’
ERROR: dependencies ‘broom’, ‘dplyr’, ‘dbplyr’, ‘forcats’, ‘ggplot2’, ‘haven’, ‘httr’, ‘jsonlite’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘rvest’, ‘tibble’, ‘tidyr’ are not available for package ‘tidyverse’
* removing ‘/Users/ram/miniconda3/envs/conda-r-test/lib/R/library/tidyverse’
The downloaded source packages are in
‘/private/var/folders/sm/8hlrh2655g7bycnj4lc7zcvm0000gn/T/RtmpUbjNLG/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
There were 23 warnings (use warnings() to see them)
> warnings()
Warning messages:
1: In install.packages("tidyverse") :
installation of package ‘utf8’ had non-zero exit status
2: In install.packages("tidyverse") :
installation of package ‘jsonlite’ had non-zero exit status
3: In install.packages("tidyverse") :
installation of package ‘fs’ had non-zero exit status
4: In install.packages("tidyverse") :
installation of package ‘openssl’ had non-zero exit status
5: In install.packages("tidyverse") :
installation of package ‘lubridate’ had non-zero exit status
6: In install.packages("tidyverse") :
installation of package ‘rmarkdown’ had non-zero exit status
7: In install.packages("tidyverse") :
installation of package ‘pillar’ had non-zero exit status
8: In install.packages("tidyverse") :
installation of package ‘httr’ had non-zero exit status
9: In install.packages("tidyverse") :
installation of package ‘reprex’ had non-zero exit status
10: In install.packages("tidyverse") :
installation of package ‘rvest’ had non-zero exit status
11: In install.packages("tidyverse") :
installation of package ‘tibble’ had non-zero exit status
12: In install.packages("tidyverse") :
installation of package ‘cellranger’ had non-zero exit status
13: In install.packages("tidyverse") :
installation of package ‘dplyr’ had non-zero exit status
14: In install.packages("tidyverse") :
installation of package ‘forcats’ had non-zero exit status
15: In install.packages("tidyverse") :
installation of package ‘ggplot2’ had non-zero exit status
16: In install.packages("tidyverse") :
installation of package ‘readr’ had non-zero exit status
17: In install.packages("tidyverse") :
installation of package ‘dbplyr’ had non-zero exit status
18: In install.packages("tidyverse") :
installation of package ‘haven’ had non-zero exit status
19: In install.packages("tidyverse") :
installation of package ‘readxl’ had non-zero exit status
20: In install.packages("tidyverse") :
installation of package ‘tidyr’ had non-zero exit status
21: In install.packages("tidyverse") :
installation of package ‘broom’ had non-zero exit status
22: In install.packages("tidyverse") :
installation of package ‘modelr’ had non-zero exit status
23: In install.packages("tidyverse") :
installation of package ‘tidyverse’ had non-zero exit status
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