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RamRS/BioStars-128831-ncbi_error_report.xml

Created January 29, 2015 15:10
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BioStars-128831-ncbi_error_report.xml
<Report>
<Run>
<Date>
<Start value="Thu Jan 29 2015 2:08:32 PM"/>
<End value="Thu Jan 29 2015 2:39:03 PM"/>
</Date>
<Home name="USERPROFILE" value="C:\Users\Administrator"/>
<Cwd>/g/sratoolkit.2.4.3-win64/bin</Cwd>
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<Arg index="1" value="-A"/>
<Arg index="2" value="SRR1597832"/>
<Arg index="3" value="SRR1597832.sra"/>
</CommandLine>
<Result rc="RC(rcVDB,rcBlob,rcReading,rcBlob,rcCorrupt)"/>
<User admin="true"/>
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<File name="/c/Users/Administrator/.ncbi/user-settings.mkfg"/>
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<File name="/g/sratoolkit.2.4.3-win64/bin/ncbi/vdb-copy.kfg"/>
</Files>
<refseq state="not found"/>
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<sra state="not found"/>
<Config>
<APPNAME>fastq-dump</APPNAME>
<BUILD>RELEASE</BUILD>
<HOME>/c/Users/Administrator</HOME>
<HOST></HOST>
<NCBI_HOME>/c/Users/Administrator/.ncbi</NCBI_HOME>
<NCBI_SETTINGS>/c/Users/Administrator/.ncbi/user-settings.mkfg</NCBI_SETTINGS>
<OS>win</OS>
<PWD>/g/sratoolkit.2.4.3-win64/bin</PWD>
<USER></USER>
<VDBCOPY>
<DO_NOT_REDACT>CS_KEY,FLOW_CHARS,KEY_SEQUENCE,LINKER_SEQUENCE</DO_NOT_REDACT>
<META>
<IGNORE>col,.seq,STATS,BASE_COUNT,HUFFMAN_TREE_POS,HUFFMAN_TREE_POS_SIZE,HUFFMAN_TREE_PRB,HUFFMAN_TREE_PRB_SIZE,HUFFMAN_TREE_SIG,HUFFMAN_TREE_SIG_SIZE,MSC454_CLIP_QUALITY_LEFT,MSC454_CLIP_QUALITY_RIGHT,MSC454_FLOW_CHARS,MSC454_KEY_SEQUENCE,NREADS,NUMBER_POS_CHANNELS,NUMBER_PRB_CHANNELS_1,NUMBER_PRB_COLUMNS,NUMBER_SIG_CHANNELS,PLATFORM,READ_0,READ_1,SPOT_COUNT</IGNORE>
</META>
<NCBI_SRA_ABI_tbl_v1_1>
<schema>sra/abi.vschema</schema>
<tab>NCBI:SRA:ABI:tbl:v2</tab>
</NCBI_SRA_ABI_tbl_v1_1>
<NCBI_SRA_Illumina_tbl_v0a_1>
<schema>sra/illumina.vschema</schema>
<tab>NCBI:SRA:Illumina:tbl:phred:v2</tab>
</NCBI_SRA_Illumina_tbl_v0a_1>
<NCBI_SRA__454__tbl_v0_1>
<schema>sra/454.vschema</schema>
<tab>NCBI:SRA:_454_:tbl:v2</tab>
</NCBI_SRA__454__tbl_v0_1>
<READ_FILTER_COL_NAME>READ_FILTER</READ_FILTER_COL_NAME>
<REDACTABLE_TYPES>INSDC:color:text,INSDC:x2cs:bin,INSDC:2cs:bin,INSDC:2cs:packed,INSDC:dna:text,INSDC:4na:bin,INSDC:4na:packed,INSDC:x2na:bin,INSDC:2na:bin,INSDC:2na:packed,NCBI:SRA:pos16,INSDC:quality:phred,INSDC:quality:log_odds,NCBI:qual4,INSDC:position:one,INSDC:position:zero,NCBI:fsamp4,NCBI:isamp1</REDACTABLE_TYPES>
<REDACTVALUE>
<INSDC_color_text>
<VALUE>'.'</VALUE>
</INSDC_color_text>
<INSDC_dna_text>
<VALUE>'N'</VALUE>
</INSDC_dna_text>
<NCBI_qual4>
<VALUE>-6</VALUE>
</NCBI_qual4>
<TYPES>INSDC_color_text,INSDC_dna_text,NCBI_qual4</TYPES>
</REDACTVALUE>
<SCORE>
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<INSDC_2na_packed>2</INSDC_2na_packed>
<INSDC_SRA_read_type>1</INSDC_SRA_read_type>
<INSDC_quality_log_odds>1</INSDC_quality_log_odds>
<INSDC_quality_phred>1</INSDC_quality_phred>
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<INSDC_x2na_bin>1</INSDC_x2na_bin>
</SCORE>
<_454_>
<schema>sra/454.vschema</schema>
<tab>NCBI:SRA:_454_:tbl:v2</tab>
</_454_>
<_ABSOLID_>
<schema>sra/abi.vschema</schema>
<tab>NCBI:SRA:ABI:tbl:v2</tab>
</_ABSOLID_>
<_ILLUMINA_>
<schema>sra/illumina.vschema</schema>
<tab>NCBI:SRA:Illumina:tbl:phred:v2</tab>
</_ILLUMINA_>
</VDBCOPY>
<VDB_CONFIG></VDB_CONFIG>
<VDB_ROOT></VDB_ROOT>
<config>
<default>false</default>
</config>
<kfg>
<arch>
<bits>64</bits>
<name></name>
</arch>
<dir>/c/Users/Administrator/.ncbi</dir>
<name>user-settings.mkfg</name>
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<pwfile>/c/Users/Administrator/.ncbi/vdb-passwd</pwfile>
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<repository>
<remote>
<aux>
<NCBI>
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<nakmer>
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<fuseNAKMER>sadb</fuseNAKMER>
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<nannot>
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<root>http://ftp-trace.ncbi.nlm.nih.gov/sra</root>
</NCBI>
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<main>
<CGI>
<resolver-cgi>http://www.ncbi.nlm.nih.gov/Traces/names/names.cgi</resolver-cgi>
</CGI>
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<CGI>
<resolver-cgi>http://www.ncbi.nlm.nih.gov/Traces/names/names.cgi</resolver-cgi>
</CGI>
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<nannot>
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<nannotFlat>nannot</nannotFlat>
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</nannot>
<refseq>
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<refseq>refseq</refseq>
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<sraFlat>sra</sraFlat>
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<root>/c/Users/Administrator/ncbi/public</root>
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</main>
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<dbGaP-0>
<apps>
<file>
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<sraFlat>sra</sraFlat>
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<cache-enabled>true</cache-enabled>
<description>Public phs000710.EA download testing</description>
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<root>/c/Users/Administrator/ncbi/dbGaP-0</root>
</dbGaP-0>
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</repository>
<tools>
<ascp>
<max_rate>300m</max_rate>
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</tools>
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<lib>
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