Created
January 29, 2015 15:10
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BioStars-128831-ncbi_error_report.xml
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| <Report> | |
| <Run> | |
| <Date> | |
| <Start value="Thu Jan 29 2015 2:08:32 PM"/> | |
| <End value="Thu Jan 29 2015 2:39:03 PM"/> | |
| </Date> | |
| <Home name="USERPROFILE" value="C:\Users\Administrator"/> | |
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| <Arg index="1" value="-A"/> | |
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| <Arg index="3" value="SRR1597832.sra"/> | |
| </CommandLine> | |
| <Result rc="RC(rcVDB,rcBlob,rcReading,rcBlob,rcCorrupt)"/> | |
| <User admin="true"/> | |
| </Run> | |
| <Configuration> | |
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| <File name="/c/Users/Administrator/.ncbi/user-settings.mkfg"/> | |
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| <File name="/g/sratoolkit.2.4.3-win64/bin/ncbi/vdb-copy.kfg"/> | |
| </Files> | |
| <refseq state="not found"/> | |
| <krypto file="not found">/c/Users/Administrator/.ncbi/vdb-passwd</krypto> | |
| <sra state="not found"/> | |
| <Config> | |
| <APPNAME>fastq-dump</APPNAME> | |
| <BUILD>RELEASE</BUILD> | |
| <HOME>/c/Users/Administrator</HOME> | |
| <HOST></HOST> | |
| <NCBI_HOME>/c/Users/Administrator/.ncbi</NCBI_HOME> | |
| <NCBI_SETTINGS>/c/Users/Administrator/.ncbi/user-settings.mkfg</NCBI_SETTINGS> | |
| <OS>win</OS> | |
| <PWD>/g/sratoolkit.2.4.3-win64/bin</PWD> | |
| <USER></USER> | |
| <VDBCOPY> | |
| <DO_NOT_REDACT>CS_KEY,FLOW_CHARS,KEY_SEQUENCE,LINKER_SEQUENCE</DO_NOT_REDACT> | |
| <META> | |
| <IGNORE>col,.seq,STATS,BASE_COUNT,HUFFMAN_TREE_POS,HUFFMAN_TREE_POS_SIZE,HUFFMAN_TREE_PRB,HUFFMAN_TREE_PRB_SIZE,HUFFMAN_TREE_SIG,HUFFMAN_TREE_SIG_SIZE,MSC454_CLIP_QUALITY_LEFT,MSC454_CLIP_QUALITY_RIGHT,MSC454_FLOW_CHARS,MSC454_KEY_SEQUENCE,NREADS,NUMBER_POS_CHANNELS,NUMBER_PRB_CHANNELS_1,NUMBER_PRB_COLUMNS,NUMBER_SIG_CHANNELS,PLATFORM,READ_0,READ_1,SPOT_COUNT</IGNORE> | |
| </META> | |
| <NCBI_SRA_ABI_tbl_v1_1> | |
| <schema>sra/abi.vschema</schema> | |
| <tab>NCBI:SRA:ABI:tbl:v2</tab> | |
| </NCBI_SRA_ABI_tbl_v1_1> | |
| <NCBI_SRA_Illumina_tbl_v0a_1> | |
| <schema>sra/illumina.vschema</schema> | |
| <tab>NCBI:SRA:Illumina:tbl:phred:v2</tab> | |
| </NCBI_SRA_Illumina_tbl_v0a_1> | |
| <NCBI_SRA__454__tbl_v0_1> | |
| <schema>sra/454.vschema</schema> | |
| <tab>NCBI:SRA:_454_:tbl:v2</tab> | |
| </NCBI_SRA__454__tbl_v0_1> | |
| <READ_FILTER_COL_NAME>READ_FILTER</READ_FILTER_COL_NAME> | |
| <REDACTABLE_TYPES>INSDC:color:text,INSDC:x2cs:bin,INSDC:2cs:bin,INSDC:2cs:packed,INSDC:dna:text,INSDC:4na:bin,INSDC:4na:packed,INSDC:x2na:bin,INSDC:2na:bin,INSDC:2na:packed,NCBI:SRA:pos16,INSDC:quality:phred,INSDC:quality:log_odds,NCBI:qual4,INSDC:position:one,INSDC:position:zero,NCBI:fsamp4,NCBI:isamp1</REDACTABLE_TYPES> | |
| <REDACTVALUE> | |
| <INSDC_color_text> | |
| <VALUE>'.'</VALUE> | |
| </INSDC_color_text> | |
| <INSDC_dna_text> | |
| <VALUE>'N'</VALUE> | |
| </INSDC_dna_text> | |
| <NCBI_qual4> | |
| <VALUE>-6</VALUE> | |
| </NCBI_qual4> | |
| <TYPES>INSDC_color_text,INSDC_dna_text,NCBI_qual4</TYPES> | |
| </REDACTVALUE> | |
| <SCORE> | |
| <INSDC_2cs_bin>2</INSDC_2cs_bin> | |
| <INSDC_2cs_packed>2</INSDC_2cs_packed> | |
| <INSDC_2na_bin>2</INSDC_2na_bin> | |
| <INSDC_2na_packed>2</INSDC_2na_packed> | |
| <INSDC_SRA_read_type>1</INSDC_SRA_read_type> | |
| <INSDC_quality_log_odds>1</INSDC_quality_log_odds> | |
| <INSDC_quality_phred>1</INSDC_quality_phred> | |
| <INSDC_x2cs_bin>1</INSDC_x2cs_bin> | |
| <INSDC_x2na_bin>1</INSDC_x2na_bin> | |
| </SCORE> | |
| <_454_> | |
| <schema>sra/454.vschema</schema> | |
| <tab>NCBI:SRA:_454_:tbl:v2</tab> | |
| </_454_> | |
| <_ABSOLID_> | |
| <schema>sra/abi.vschema</schema> | |
| <tab>NCBI:SRA:ABI:tbl:v2</tab> | |
| </_ABSOLID_> | |
| <_ILLUMINA_> | |
| <schema>sra/illumina.vschema</schema> | |
| <tab>NCBI:SRA:Illumina:tbl:phred:v2</tab> | |
| </_ILLUMINA_> | |
| </VDBCOPY> | |
| <VDB_CONFIG></VDB_CONFIG> | |
| <VDB_ROOT></VDB_ROOT> | |
| <config> | |
| <default>false</default> | |
| </config> | |
| <kfg> | |
| <arch> | |
| <bits>64</bits> | |
| <name></name> | |
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| <dir>/c/Users/Administrator/.ncbi</dir> | |
| <name>user-settings.mkfg</name> | |
| </kfg> | |
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| <pwfile>/c/Users/Administrator/.ncbi/vdb-passwd</pwfile> | |
| </krypto> | |
| <repository> | |
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| <NCBI> | |
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| <nakmer> | |
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| <nannot> | |
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| </nannot> | |
| <refseq> | |
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| <refseq>refseq</refseq> | |
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| </refseq> | |
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| <root>http://ftp-trace.ncbi.nlm.nih.gov/sra</root> | |
| </NCBI> | |
| </aux> | |
| <main> | |
| <CGI> | |
| <resolver-cgi>http://www.ncbi.nlm.nih.gov/Traces/names/names.cgi</resolver-cgi> | |
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| <resolver-cgi>http://www.ncbi.nlm.nih.gov/Traces/names/names.cgi</resolver-cgi> | |
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| </remote> | |
| <user> | |
| <default-path>/c/Users/Administrator/ncbi</default-path> | |
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| <nakmerFlat>nannot</nakmerFlat> | |
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| <nannotFlat>nannot</nannotFlat> | |
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| <refseq> | |
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| <refseq>refseq</refseq> | |
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| <sra> | |
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| <sraFlat>sra</sraFlat> | |
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| <wgs> | |
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| <wgsFlat>wgs</wgsFlat> | |
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| <cache-enabled>true</cache-enabled> | |
| <root>/c/Users/Administrator/ncbi/public</root> | |
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| <sra> | |
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| <sraFlat>sra</sraFlat> | |
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| <cache-enabled>true</cache-enabled> | |
| <description>Public phs000710.EA download testing</description> | |
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| <encryption-key-path>/c/Users/Administrator/.ncbi/dbGap-0.enc_key</encryption-key-path> | |
| <root>/c/Users/Administrator/ncbi/dbGaP-0</root> | |
| </dbGaP-0> | |
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| </user> | |
| </repository> | |
| <tools> | |
| <ascp> | |
| <max_rate>300m</max_rate> | |
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| <kfg>/g/sratoolkit.2.4.3-win64/bin</kfg> | |
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| </vdb> | |
| </Config> | |
| <CurrentProtectedRepository found="false"/> | |
| </Configuration> | |
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| <Dependencies> | |
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| <Dependency index="85" seq_id="hs37d5" local="false" path=""/> | |
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| <VDBLibrary vers="2.6.4"/> | |
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| <Tool date="Dec 24 2014" name="fastq-dump" vers="2.4.3"> | |
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