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Reasat / FeatureExtraction_batch.xml
Created March 16, 2021 04:49
Implementing a data generator to create batch of images for feature extraction in HIstomicsML2
<?xml version="1.0" encoding="UTF-8"?>
<executable>
<category>HistomicsTK</category>
<title>Create HistomicsML Dataset</title>
<description>Create HistomicsML files</description>
<version>0.1.0</version>
<documentation-url>https://digitalslidearchive.github.io/HistomicsTK/</documentation-url>
<license>Apache 2.0</license>
<contributor>Deepak Roy Chittajallu (Kitware), Sanghoon Lee (Emory University)</contributor>
<acknowledgements>This work is part of the HistomicsTK project.</acknowledgements>
@Reasat
Reasat / FeatureExtraction_batch.py
Last active March 17, 2021 09:06
Implementing a data generator to create batch of images for feature extraction in HIstomicsML2
import os
import json
import h5py
import time
from tqdm import tqdm
import pandas as pd
import numpy as np
import keras
import histomicstk.preprocessing.color_normalization as htk_cnorm
import histomicstk.utils as htk_utils